Lsi03G004950 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G004950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionBasic helix-loop-helix DNA-binding superfamily protein, putative
Locationchr03 : 5693706 .. 5698868 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCACCACCCTCCTCCTTGGACCCTCCTCAACTCCGGCAGCGACGTCGACGATGACGACGACGACAACAACGACAACTACAATGACATCAAATTCCCCATCAACAACACCCACCTTCTCCCTCCTCCCCCGACGCAGGTGGGGAAGAAGAGAGAGGCAACCGAGGGAAAATCGGGTGGCGCTACCGAGTCGTCGGATCACGACATTCATATTTGGACGGAGAGAGAACGGCGGAAGAAAATGAGAAATATGTTCTCTAATCTTCATGCCTTGCTTCCTCACCTTCCTCCTAAGGTACCTTCACATTATACAAAAATTGTATCACTTTTTATTTAATTATTATTATTATCTATTTCACAATTACTTCTTCTTTAAAAAGTTAAAAATTTTCATACTCTCAATTTATATATATATATATATTTAAAAAAAAATGAAAAAACCCTATTAAGAGATTTAATTTTGGGTTATTTTTAAATATAGAAAAATGAGTCAAACTATTTACAAATATAGAGAAATTTAATTGTTTATCAACGGTAGATCGCGATAGAACGCTGGTAGATCACGATAAAATTCTATTGCTAATAGATAGTAAAATTTCTTCTATATTTATAAATAATTTGATATTTTTTCTGTTTACATTAATTTCCTTTTAATTTTCTTTGTTGTTCATAAAAACAAGTTTTCTTTTCAACGTAGTATAAGGAACCATAAAATTAAAAGCTGCAAAAAGTGGCATTATCCTATGTGTGTCTTGGATTTTAATCATATGGGATTCTTTATTAATGTATTCATAACTTCTTTTTTTTTTGAGGGAATGTCATGCCTTTTAATAATAATAATGGAGAGGAAAGATTTTTATGACATGTTTTTAATGTAAAAAGAGTAAAAGGGACATGTTTTTTTTGGTATATATTTTAGGGAGATTTTTAAAAATAAAAAAAATAAGGGAAACTATTTACACAAAATAGCAAAATTTTTATATAGTTGTGATAGATGCTGATAGAAGTATATCAGAGTCTATCAATGATAGAAATGAGAGAAGTCTATCGCTGATAGATGCTGATAGAAGTCTATCAATGTCTATCAATATTTTTTTTGTTATTTTCTGTAAATAGTTTGACAACTTTTCTATTTGTAAAAATTTTCTTATATTTTAGATAGAAAATGAAATAAATAAATTATTGATGAATGACCCTCATTTTTAAAAGAGAAAAAAGAAAAAAGAAAAAAAAGAAAAATCTTATTTTTGTTTACAGAGGAGCATATTTAGAAATTAGTTGTCATGCATGAGTTCAATTGAAACAATTTAGGGTCTTTTTAATTAAAAAAAACTAAGAAAATAATTTAGGTTTATTTTCTTTTTTTTTTTGTTTTGGGTGTGTGTTCTTTAATATATTATTATTATTTACTAATTCTCCTTTTTAAAACTATAGAGAAATAAATAGCTTTCACTCACCCTTTTGATCTTCTTAGATTAGGATATTGACTATTATTGAAATTATTTTTCTAAAAAATTAAAGGTAAATTTAAGAAAAAAAATTGAAATAAAACTAGGGGATAAGTGCGTGTATTATGTCTTATAATATATATTATGTAAATTAATATTGATGATTGGAATGAGTACATGAAACAAATAATATTTGTTTGGTAACTATTTAGTTTTTAATTTTTTATTTTTGAAAATTAAGTCTATTTACTCTCAATTTCTTACAATGATTTGTATTTTACTACTTAACCAAATTTCAAATTTTAAAAACTAGTTTTTTTTTCTTTATTTTTTAAAACATTGGTAAGAAGAAGATAACAAAGCAAGAAATTTATAGGTGAAAGTAGTAATTAAAGGCTTAATTTTCAAAAATTAAAATAAAAAAAATGAAATGATATTATAAAACAGGACCTAAGATTATTCTTTTTAATCCTTGTACTTTAAAAAAATTTAAGAAAATGATAATAAATATTTTTTTTTGAAAAATCAACAACTATTATGACTATTTTTTAGATTTATTAAAAGTAAATTAAATTTAAACATTTAAATGTATAAAAATTAAAATGAATTGAAATTGAAATTACACACCTATTAAAATAATATGTATTCTAACCAGATATATGATGTAGTTAAAACCTCAAATCATAGTCAAACCTTAAATATAATAAAATAGCTTTCCTTAAAACTTAGTCTATGAACTCCGATCCCAATTTTGCATCTCTTTTAACTATCTTTTTTCTTTTTAAAGGATTATAGGCTTATCAGAGAAAAAAATTACTGAATAAGACTCTGATCTTTCAATTGTATTTCTAATAAATCGGTAAATTAAAAAAAAAAAAAAAAAAGTGATATAGGTACATACGAACCCTAAGTAGACATAATAGATGCATACATATATTTATTTATATACAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAATAATACAAAAGATCTATAACTTTGTAATTTGTGTCAAAAAACTCTTGAACTTTTAAAAGTTTCAAAAATATCCTTAAACTTCTAAAATGAGTTTAAAAAATACTCTTACGGTTAGTTTTGGATGGAAACTATTAGTGTTTTGGTTAAAAAAATACACATGAACTTTCAAAAGTTTAAAGAATACCCTTAAACTTAAAAAGAAATTCAAAAATATTTTTATGGTTATATGAACAAAAACCGTTAATACCATCTTTCTTCCCTTTTTTTCCTCTCCCCTTCAATATCTTCGCTCCCCTTCTTGTTAACTATTTGATGACATTTGTTTATCACAATAAATAATTAATAAAATTGCACACGTCAGCCAAGCTATATATACTATAATAAGACGAAGAAAGAGACTAATAGAAGCACCAAAGTAATTTTAGGAATTAAATATTTTTACAAAGTTGTAAGTTAATTGTTGAGTATGTGTTAATAGCTAAATACTTTTTTTTATTTAACTATTTATTGTGTTGGTATATTTTAAGGAGAGATTTTGATTTTAAAATTTTATGAGAATTTGTGAGGTTTTATGTTTTAACTTAAAATTTTGGTTACTAAGAAAATTGGTGTAATAATTAAAAAATAGGAGAAAAATGAGAGTATATATAAAAAAATGAGGATATTTATATAATTTGTTTTAAAATTGGTTCTTTTCGAACTCAAAGAAAAAAACTTTAAACAAATTGATCATCATCCTAACCGTAGGAGCATTCTTAATTTTTTTTTTAATTTTAAACTTATTTTTGCAACGAGGTATTAATGATTTTTGTTCCCATATTAACAATAAAGAGATTTTTTATTTTTTTATTCTTTTAAGTTTAAAAGTATTTTTGAAACATTTGAAAGTTTAGAGATATTTTTGAAATAAAACTTTAACCGTATCTATCCCAAACTAATTGAAGAATGAAAAATGACAGGCAGACAAATCCAGTATAGTAGACGAAGCAGTAAACTACATAAAAGTCCTTCAAGAAACCCTCCAAAAACTCCACAAACAAAAGCTCCAAAAACTCAACAACAATAATAACCCATTTCTGAGCTGCTCTAAGATTGTTCATCATCCCTTACCCACAACCCGCGAGGCATTCTTGGCTGACCAAGCCTCCTCCAACGACGACGTCTCGTCGTCGTCCGCTGCCCTACTTCCTCATCTTTCCACCACCATCACTGCCGACAATGTTATTAGTATTCTCCCACCGCCACCGCCACCCTCCATCTTTCAAACTTGGACTTCCTCCAACCTCGTCTTAAGCATCTGCGGCCCCCATGCTCATTTCTCCGTCTGCTCCACCAAGAAACCCGGCATGTTTGCTGCCCTTTGTTATGTTCTTGACAAGCATCGAATCGACGTCGTTTCCGCTCATGTCTCCTCCGATTTCCATCGTTCCTTCTTTATGATTCAAGCTCATGTAAGTATCATATCCATATCTTCATCTTTACATTTTCACTTCTTTGGGTTTCTTCTTTTGGAGACGTGCTTACAAATTTAGTTTTGCAAAAACTAATGAAACCTTTTGTTTAAAGTAAAATGTAGTTTGAATGTTAAAACTTAGATAGAACACTATATATAATTTTGAAATTTTTTGGTTAAAGTGCAAGTTTAGTCCTTTAGCTCGTGTTTATTTAGTATTTGAATTTTTAAAAGTGAAGACCTATTATTTTGTGCCTAATAGGTGTCTGACATATTTAAAATTGTTAAAAATTAATTGACCTATTAAATATAAATTTGAATTTTATGTTTAATATAATGGAACTATAAACTTTCAATTTCATGTCTAATAAATCTGTAAATTTCTATTTTCAAAACATATTTGAGACATGAAATGGAAAATCTAATGACCTACCAGACACGAAATTAAAAATTTAAGTATCTATTGGACACAAAATTAAAAGTTGAAGGACTTAATTATCAAAAACATTTTTAAAGTTCAGTGATCTATTAGATACAAATTGAAATGTATATAACACTTGAAAGTTAAGGAATCAAATAAATACAACCCTTAAAAAGTTTAAAGACTAAACTTGTAATTTTACTAGAATTTTAATACATTTAAAAATTTTATTACATTAAAACCAAATTGAAAACTAATAGGCATTTTATATAATATTCTTTTCTTCTTAGGAAAGGTAGGGAACTAAAAAAAACAAGAAACAAGAACATTACCAAACAAATTTCTTCTCGAGATCATTCCAAAAGTTGTTATTTGAAATGAGTTGTTTCGACGAAAGCAGGCGAACGAAGGTTATGATGAATTTGGGACGGCAACGGTGGCAGAAGATACATTCAAGGAAGCTGCAGGGGAGATCATATTTTGGTTGTCTTCTTGA

mRNA sequence

ATGTCCCACCACCCTCCTCCTTGGACCCTCCTCAACTCCGGCAGCGACGTCGACGATGACGACGACGACAACAACGACAACTACAATGACATCAAATTCCCCATCAACAACACCCACCTTCTCCCTCCTCCCCCGACGCAGGTGGGGAAGAAGAGAGAGGCAACCGAGGGAAAATCGGGTGGCGCTACCGAGTCGTCGGATCACGACATTCATATTTGGACGGAGAGAGAACGGCGGAAGAAAATGAGAAATATGTTCTCTAATCTTCATGCCTTGCTTCCTCACCTTCCTCCTAAGATTGTTCATCATCCCTTACCCACAACCCGCGAGGCATTCTTGGCTGACCAAGCCTCCTCCAACGACGACGTCTCGTCGTCGTCCGCTGCCCTACTTCCTCATCTTTCCACCACCATCACTGCCGACAATGTTATTAGTATTCTCCCACCGCCACCGCCACCCTCCATCTTTCAAACTTGGACTTCCTCCAACCTCGTCTTAAGCATCTGCGGCCCCCATGCTCATTTCTCCGTCTGCTCCACCAAGAAACCCGGCATGTTTGCTGCCCTTTGTTATGTTCTTGACAAGCATCGAATCGACGTCGTTTCCGCTCATGTCTCCTCCGATTTCCATCGTTCCTTCTTTATGATTCAAGCTCATGCGAACGAAGGTTATGATGAATTTGGGACGGCAACGGTGGCAGAAGATACATTCAAGGAAGCTGCAGGGGAGATCATATTTTGGTTGTCTTCTTGA

Coding sequence (CDS)

ATGTCCCACCACCCTCCTCCTTGGACCCTCCTCAACTCCGGCAGCGACGTCGACGATGACGACGACGACAACAACGACAACTACAATGACATCAAATTCCCCATCAACAACACCCACCTTCTCCCTCCTCCCCCGACGCAGGTGGGGAAGAAGAGAGAGGCAACCGAGGGAAAATCGGGTGGCGCTACCGAGTCGTCGGATCACGACATTCATATTTGGACGGAGAGAGAACGGCGGAAGAAAATGAGAAATATGTTCTCTAATCTTCATGCCTTGCTTCCTCACCTTCCTCCTAAGATTGTTCATCATCCCTTACCCACAACCCGCGAGGCATTCTTGGCTGACCAAGCCTCCTCCAACGACGACGTCTCGTCGTCGTCCGCTGCCCTACTTCCTCATCTTTCCACCACCATCACTGCCGACAATGTTATTAGTATTCTCCCACCGCCACCGCCACCCTCCATCTTTCAAACTTGGACTTCCTCCAACCTCGTCTTAAGCATCTGCGGCCCCCATGCTCATTTCTCCGTCTGCTCCACCAAGAAACCCGGCATGTTTGCTGCCCTTTGTTATGTTCTTGACAAGCATCGAATCGACGTCGTTTCCGCTCATGTCTCCTCCGATTTCCATCGTTCCTTCTTTATGATTCAAGCTCATGCGAACGAAGGTTATGATGAATTTGGGACGGCAACGGTGGCAGAAGATACATTCAAGGAAGCTGCAGGGGAGATCATATTTTGGTTGTCTTCTTGA

Protein sequence

MSHHPPPWTLLNSGSDVDDDDDDNNDNYNDIKFPINNTHLLPPPPTQVGKKREATEGKSGGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPKIVHHPLPTTREAFLADQASSNDDVSSSSAALLPHLSTTITADNVISILPPPPPPSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCYVLDKHRIDVVSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS
Homology
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BLAST of Lsi03G004950 vs. Swiss-Prot
Match: BH095_ARATH (Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 1 

Query: 100 IVHHPLPTT------REAFLADQASSNDDVSSSSAALLPHLSTTITADNVISILPPPPPP 159
           I +HP+  T      R AFLADQ SS    SS++AA LP+              P   P 
Sbjct: 166 ISNHPIDATATDSYPRAAFLADQVSS----SSAAAANLPY--------------PCNDPI 225

Query: 160 SIFQTWTSSNLVLSICGPHAHFSVCSTK-KPGMFAALCYVLDKHRIDVVSAHVSSDFHRS 219
             F TW+S N+VL+ICG  A F++C  K KPG+F ++CY+ +K+ ++V+ A+VSS+   S
Sbjct: 226 VNFDTWSSRNVVLTICGNEAFFNLCVPKHKPGVFTSVCYLFEKYNMEVLFANVSSNVFWS 285

Query: 220 FFMIQAHANEGYDE--FGTATVAEDTFKEAAGEIIFWLSS 251
            ++IQA  N   +    G      D FK+ + E++ + SS
Sbjct: 286 TYVIQAQVNPSCENQLLGNGLGVVDVFKQVSQELVLYFSS 307

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BLAST of Lsi03G004950 vs. TrEMBL
Match: A0A0A0K4R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073650 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.2e-96
Identity = 201/299 (67.22%), Postives = 216/299 (72.24%), Query Frame = 1 

Query: 2   SHHPPPWTLLN-SGSDVDDDDDDNNDNYNDIKFPINNTHLLPPPPTQVGKKREA-TEGKS 61
           +HH P WTLLN SGSD+DDDD++NN   N+     N  +L PPPP Q GKKRE  TEGKS
Sbjct: 3   AHHHPSWTLLNYSGSDIDDDDNNNNHENNNNN---NTGYLPPPPPMQAGKKRELETEGKS 62

Query: 62  GGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK-----IVH------------ 121
            GATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK     IV             
Sbjct: 63  AGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPKADKSSIVDEAVNYIKTLQET 122

Query: 122 -------------------------------HPLPTTREAFLADQASSNDDVSSSSAALL 181
                                          HPLPTTREAFLADQASSNDD+ SSSA LL
Sbjct: 123 FQRLHKQKVEKLNNNNNNNNNPSMGCSKIVHHPLPTTREAFLADQASSNDDM-SSSATLL 182

Query: 182 PHLSTTITADNVISILPPPPPPSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCY 241
            HLSTTIT +NV+S LP P PPS FQTWTSSNLVLS+CG HAHF VCS KKPG+FAALCY
Sbjct: 183 SHLSTTITPENVLSNLPLPSPPSAFQTWTSSNLVLSVCGRHAHFCVCSAKKPGLFAALCY 242

Query: 242 VLDKHRIDVVSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS 251
           VLDK+RIDVVSAHVSSD H+SFFMIQAH + GY+EFG ATVAEDTFKEAAGEIIFWLSS
Sbjct: 243 VLDKYRIDVVSAHVSSDVHQSFFMIQAHVSRGYNEFGAATVAEDTFKEAAGEIIFWLSS 297

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BLAST of Lsi03G004950 vs. TrEMBL
Match: A5B4T9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00170 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 99/230 (43.04%), Postives = 130/230 (56.52%), Query Frame = 1 

Query: 53  EATEGKSGGATES-SDHDIHIWTERERRKKMRNMFSNLHALLPHLPP------------- 112
           E  EGKSGG     SDH+IHIWTERERRKKMRNMFS+LHALLP LPP             
Sbjct: 76  EGNEGKSGGGGGGESDHEIHIWTERERRKKMRNMFSSLHALLPQLPPKADKSTIVDEAVN 135

Query: 113 --KIVHHPLPTTREAFL-----ADQASSNDDVSSSSAALLPHLSTTITADNVISILPPPP 172
             K + H L   ++  L     A   +    + +S           +      S L   P
Sbjct: 136 YIKTLQHTLQKLQKQKLERLQGATTVNYEPSIITSQKLAFDSREAFLADQGSSSNLAITP 195

Query: 173 P-----------PSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCYVLDKHRIDV 232
                       P++FQ+WTS N+ L++CG  A  SVCS KKPG+   +CYVL+KH+++V
Sbjct: 196 SNSSNSLSVARVPAVFQSWTSPNVTLNVCGNEAQISVCSPKKPGLLTTICYVLEKHKLEV 255

Query: 233 VSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS 251
           +SAHVSSD++RS +MIQ +AN   D+F      E+ +K+AAGEI+FW SS
Sbjct: 256 ISAHVSSDYNRSMYMIQTNANGALDQFPVGFPMEEVYKQAAGEIMFWASS 305

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BLAST of Lsi03G004950 vs. TrEMBL
Match: V4UAF0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030106mg PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 111/285 (38.95%), Postives = 149/285 (52.28%), Query Frame = 1 

Query: 35  INNTHLLPPPPT-----QVGKKREATEG---------------KSGGATESSD------- 94
           +++T L PP P+     ++ KK+E ++G               K G   + SD       
Sbjct: 34  VSDTTLAPPQPSSSKIPKLNKKQETSQGSSKKRARGEGGGEVGKDGNLLKGSDDKKAVKV 93

Query: 95  ------HDIHIWTERERRKKMRNMFSNLHALLPHLPPK-----IVHH------PLPTTRE 154
                 H+IHIWTERERRKKMRNMF+NLH+LLP LPPK     IV         L  T  
Sbjct: 94  KEGESEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLR 153

Query: 155 AFLADQASSNDDVSS----SSAALLPHLSTTITA--------DNVISILPPPPP------ 214
                +      V+S    +SAA+ P     I A         N++              
Sbjct: 154 KLQKQKLERLQGVASFGFEASAAITPQNKLAIVAHDRQQESSSNLLGANSTDATNNSSNL 213

Query: 215 -------PSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCYVLDKHRIDVVSAHV 251
                  P IFQTW+SSN+VL+ICG  AH S+CS KKPGMF+ +CY+L+KH+I+V+SA V
Sbjct: 214 LSVSPTYPVIFQTWSSSNVVLNICGDEAHISICSPKKPGMFSTICYLLEKHKIEVISAQV 273

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BLAST of Lsi03G004950 vs. TrEMBL
Match: M5XR14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018148mg PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 96/224 (42.86%), Postives = 124/224 (55.36%), Query Frame = 1 

Query: 49  GKKREATEGKSGGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK-----IVHH 108
           G  +E+T   + G    S+H +H WTERERRKKMR+MFS+LHALLP LP K     IV  
Sbjct: 4   GVIKESTGKAASGGGNESEHGMHTWTERERRKKMRDMFSSLHALLPQLPAKADKSTIVDE 63

Query: 109 PLP---------TTREAFLADQASSNDDVSSSSAALLPHLSTTITAD--------NVISI 168
            +           T++    D+  S   + +S+  L         AD         V + 
Sbjct: 64  SVRYIKSLEKTLQTKQKQKLDKLQSTSALIASNTELAGETREAFLADLLHPSKNLMVTNA 123

Query: 169 LPPPPPPSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCYVLDKHRIDVVSAHVS 228
            P    P+ F+TW S  +V++ICGP A FSVCS +KPG+   + Y+L+KH +DVVSAHVS
Sbjct: 124 FPASLSPACFETWFSPTVVVNICGPDAQFSVCSPRKPGLLTTILYILEKHELDVVSAHVS 183

Query: 229 SDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS 251
           SD +R  +MI AHA    D F  A   EDTFK AAGEI  WL S
Sbjct: 184 SDQYRCMYMIHAHAGGACDHFPEALSVEDTFKLAAGEINLWLLS 227

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BLAST of Lsi03G004950 vs. TrEMBL
Match: A0A067EX72_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037241mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.3e-36
Identity = 107/276 (38.77%), Postives = 140/276 (50.72%), Query Frame = 1 

Query: 35  INNTHLLPPPPT-----QVGKKREATEG---------------KSGGATESSD------- 94
           +++T L PP P+     ++ KK+E ++G               K G   + SD       
Sbjct: 31  VSDTTLAPPQPSSSKIPKLNKKQETSQGSSKKRARGEGGGEVGKDGNLLKGSDDKKAVKV 90

Query: 95  ------HDIHIWTERERRKKMRNMFSNLHALLPHLPPK-----IVHH------PLPTTRE 154
                 H+IHIWTERERRKKMRNMF+NLH+LLP LPPK     IV         L  T  
Sbjct: 91  KEGESEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLR 150

Query: 155 AFLADQASSNDDVSS----SSAALLPHLSTTITA--------DNVISILPPPPP------ 214
                +      V+S    +SAA+ P     I A         N++              
Sbjct: 151 KLQKQKLERLQGVASFGFEASAAITPQNKLAIVAHDHQQGSSSNLLGANSTDATNNSSNL 210

Query: 215 -------PSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCYVLDKHRIDVVSAHV 242
                  P IFQTWTSSN+VL+ICG  AH S+CS KKPGMF+ +CYVL+KH+I+V+SA V
Sbjct: 211 LSVSPTYPVIFQTWTSSNVVLNICGDEAHISICSPKKPGMFSTICYVLEKHKIEVISAQV 270

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BLAST of Lsi03G004950 vs. TAIR10
Match: AT1G49770.1 (AT1G49770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-18
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 1 

Query: 100 IVHHPLPTT------REAFLADQASSNDDVSSSSAALLPHLSTTITADNVISILPPPPPP 159
           I +HP+  T      R AFLADQ SS    SS++AA LP+              P   P 
Sbjct: 166 ISNHPIDATATDSYPRAAFLADQVSS----SSAAAANLPY--------------PCNDPI 225

Query: 160 SIFQTWTSSNLVLSICGPHAHFSVCSTK-KPGMFAALCYVLDKHRIDVVSAHVSSDFHRS 219
             F TW+S N+VL+ICG  A F++C  K KPG+F ++CY+ +K+ ++V+ A+VSS+   S
Sbjct: 226 VNFDTWSSRNVVLTICGNEAFFNLCVPKHKPGVFTSVCYLFEKYNMEVLFANVSSNVFWS 285

Query: 220 FFMIQAHANEGYDE--FGTATVAEDTFKEAAGEIIFWLSS 251
            ++IQA  N   +    G      D FK+ + E++ + SS
Sbjct: 286 TYVIQAQVNPSCENQLLGNGLGVVDVFKQVSQELVLYFSS 307

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BLAST of Lsi03G004950 vs. NCBI nr
Match: gi|700188696|gb|KGN43929.1| (hypothetical protein Csa_7G073650 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.8e-96
Identity = 201/299 (67.22%), Postives = 216/299 (72.24%), Query Frame = 1 

Query: 2   SHHPPPWTLLN-SGSDVDDDDDDNNDNYNDIKFPINNTHLLPPPPTQVGKKREA-TEGKS 61
           +HH P WTLLN SGSD+DDDD++NN   N+     N  +L PPPP Q GKKRE  TEGKS
Sbjct: 3   AHHHPSWTLLNYSGSDIDDDDNNNNHENNNNN---NTGYLPPPPPMQAGKKRELETEGKS 62

Query: 62  GGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK-----IVH------------ 121
            GATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK     IV             
Sbjct: 63  AGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPKADKSSIVDEAVNYIKTLQET 122

Query: 122 -------------------------------HPLPTTREAFLADQASSNDDVSSSSAALL 181
                                          HPLPTTREAFLADQASSNDD+ SSSA LL
Sbjct: 123 FQRLHKQKVEKLNNNNNNNNNPSMGCSKIVHHPLPTTREAFLADQASSNDDM-SSSATLL 182

Query: 182 PHLSTTITADNVISILPPPPPPSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCY 241
            HLSTTIT +NV+S LP P PPS FQTWTSSNLVLS+CG HAHF VCS KKPG+FAALCY
Sbjct: 183 SHLSTTITPENVLSNLPLPSPPSAFQTWTSSNLVLSVCGRHAHFCVCSAKKPGLFAALCY 242

Query: 242 VLDKHRIDVVSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS 251
           VLDK+RIDVVSAHVSSD H+SFFMIQAH + GY+EFG ATVAEDTFKEAAGEIIFWLSS
Sbjct: 243 VLDKYRIDVVSAHVSSDVHQSFFMIQAHVSRGYNEFGAATVAEDTFKEAAGEIIFWLSS 297

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BLAST of Lsi03G004950 vs. NCBI nr
Match: gi|659109917|ref|XP_008454949.1| (PREDICTED: transcription factor bHLH95-like [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.6e-95
Identity = 204/300 (68.00%), Postives = 214/300 (71.33%), Query Frame = 1 

Query: 3   HHPPPWTLLN-SGSDVDDDDDDNNDNYNDIKFPINNTHLLPPP-PTQVGKKR--EATEGK 62
           HH P WTLLN SGSDV  DDDDNND  N+     N  +L PPP P QVGKKR  E  EGK
Sbjct: 4   HHHPSWTLLNYSGSDV--DDDDNNDENNNSNNNTNTGYLPPPPAPMQVGKKRELETHEGK 63

Query: 63  SGGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK-----IVHH---------- 122
           S GATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK     IV            
Sbjct: 64  SAGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPKADKSSIVDEAVNYIKTLQE 123

Query: 123 ------------------------------PLPTTREAFLADQASSNDDVSSSSAALLPH 182
                                          LPTTREAFLADQASSNDD+ SSSA LL H
Sbjct: 124 TFERLHKQKVEKLNNNSNPSMSCSKIVHNPALPTTREAFLADQASSNDDM-SSSATLLSH 183

Query: 183 LSTTITADNVISILPPPP---PPSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALC 242
           LSTT+T +NVISILPPPP   PPS FQTWTSSNLVLS+CG HAHF VCS KKPG+FAALC
Sbjct: 184 LSTTVTPENVISILPPPPPPSPPSAFQTWTSSNLVLSVCGRHAHFCVCSAKKPGLFAALC 243

Query: 243 YVLDKHRIDVVSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS 251
           YVLDKHRIDVVSAHVSSD H+SFFMIQAH + GY+E G ATVAEDTFKEAAGEIIFWLSS
Sbjct: 244 YVLDKHRIDVVSAHVSSDLHQSFFMIQAHVSRGYNELGAATVAEDTFKEAAGEIIFWLSS 300

[Close]
BLAST of Lsi03G004950 vs. NCBI nr
Match: gi|778725107|ref|XP_004137111.2| (PREDICTED: transcription factor bHLH95 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 3.5e-84
Identity = 176/253 (69.57%), Postives = 185/253 (73.12%), Query Frame = 1 

Query: 47  QVGKKREA-TEGKSGGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK-----I 106
           Q GKKRE  TEGKS GATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPK     I
Sbjct: 2   QAGKKRELETEGKSAGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPPKADKSSI 61

Query: 107 VH-------------------------------------------HPLPTTREAFLADQA 166
           V                                            HPLPTTREAFLADQA
Sbjct: 62  VDEAVNYIKTLQETFQRLHKQKVEKLNNNNNNNNNPSMGCSKIVHHPLPTTREAFLADQA 121

Query: 167 SSNDDVSSSSAALLPHLSTTITADNVISILPPPPPPSIFQTWTSSNLVLSICGPHAHFSV 226
           SSNDD+ SSSA LL HLSTTIT +NV+S LP P PPS FQTWTSSNLVLS+CG HAHF V
Sbjct: 122 SSNDDM-SSSATLLSHLSTTITPENVLSNLPLPSPPSAFQTWTSSNLVLSVCGRHAHFCV 181

Query: 227 CSTKKPGMFAALCYVLDKHRIDVVSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTF 251
           CS KKPG+FAALCYVLDK+RIDVVSAHVSSD H+SFFMIQAH + GY+EFG ATVAEDTF
Sbjct: 182 CSAKKPGLFAALCYVLDKYRIDVVSAHVSSDVHQSFFMIQAHVSRGYNEFGAATVAEDTF 241

[Close]
BLAST of Lsi03G004950 vs. NCBI nr
Match: gi|698511355|ref|XP_009800782.1| (PREDICTED: transcription factor bHLH95-like [Nicotiana sylvestris])

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 100/232 (43.10%), Postives = 135/232 (58.19%), Query Frame = 1 

Query: 53  EATEGKSGGATESSDHDIHIWTERERRKKMRNMFSNLHALLPHLPP-------------- 112
           E  EGK  G  ES DH++HIWTERERRKKMRNMFSNLHALLP LPP              
Sbjct: 73  EVNEGKVNGGGES-DHEMHIWTERERRKKMRNMFSNLHALLPQLPPKADKSTIVDEAVNY 132

Query: 113 -KIVHHPLP---------------TTREAFLADQASSNDDVSSSSAALLPHLSTTITA-- 172
            K + H L                +   + +  Q  S D + S  A L    ST   A  
Sbjct: 133 IKTLQHTLQKLQRQKLERLHGMATSMNPSIITSQKLSADSIISREAFLADQGSTNNAAIS 192

Query: 173 --DNVISILPPPPPPSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCYVLDKHRI 232
             +N  + +  P  P++FQ+WTS N++L++CG  AH SVC  KKPG+ +++CYVL+KH+I
Sbjct: 193 PTNNAANPISMPHFPAVFQSWTSPNVILNVCGEEAHISVCCPKKPGLLSSICYVLEKHKI 252

Query: 233 DVVSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS 251
           +VVSA +SS+  R+ +MIQAHA+   D+F      E+ +K+AAGEII  ++S
Sbjct: 253 EVVSAQISSNDQRNMYMIQAHASGASDQFSETFPVEEIYKQAAGEIIMCVTS 303

[Close]
BLAST of Lsi03G004950 vs. NCBI nr
Match: gi|225428845|ref|XP_002282369.1| (PREDICTED: transcription factor bHLH95 [Vitis vinifera])

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-40
Identity = 99/230 (43.04%), Postives = 130/230 (56.52%), Query Frame = 1 

Query: 53  EATEGKSGGATES-SDHDIHIWTERERRKKMRNMFSNLHALLPHLPP------------- 112
           E  EGKSGG     SDH+IHIWTERERRKKMRNMFS+LHALLP LPP             
Sbjct: 76  EGNEGKSGGGGGGESDHEIHIWTERERRKKMRNMFSSLHALLPQLPPKADKSTIVDEAVN 135

Query: 113 --KIVHHPLPTTREAFL-----ADQASSNDDVSSSSAALLPHLSTTITADNVISILPPPP 172
             K + H L   ++  L     A   +    + +S           +      S L   P
Sbjct: 136 YIKTLQHTLQKLQKQKLERLQGATTVNYEPSIITSQKLAFDSREAFLADQGSSSNLAITP 195

Query: 173 P-----------PSIFQTWTSSNLVLSICGPHAHFSVCSTKKPGMFAALCYVLDKHRIDV 232
                       P++FQ+WTS N+ L++CG  A  SVCS KKPG+   +CYVL+KH+++V
Sbjct: 196 SNSSNSLSVARVPAVFQSWTSPNVTLNVCGNEAQISVCSPKKPGLLTTICYVLEKHKLEV 255

Query: 233 VSAHVSSDFHRSFFMIQAHANEGYDEFGTATVAEDTFKEAAGEIIFWLSS 251
           +SAHVSSD++RS +MIQ +AN   D+F      E+ +K+AAGEI+FW SS
Sbjct: 256 ISAHVSSDYNRSMYMIQTNANGALDQFPVGFPMEEVYKQAAGEIMFWASS 305

The following BLAST results are available for this feature:
BLAST of Lsi03G004950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH095_ARATH1.1e-1636.88Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2 SV=2[more]
BLAST of Lsi03G004950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4R5_CUCSA1.2e-9667.22Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073650 PE=4 SV=1[more]
A5B4T9_VITVI2.1e-4043.04Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00170 PE=4 SV=... [more]
V4UAF0_9ROSI1.8e-3938.95Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030106mg PE=4 SV=1[more]
M5XR14_PRUPE1.1e-3642.86Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018148mg PE=4 SV=1[more]
A0A067EX72_CITSI9.3e-3638.77Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037241mg PE=4 S... [more]
BLAST of Lsi03G004950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49770.16.0e-1836.88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Lsi03G004950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188696|gb|KGN43929.1|1.8e-9667.22hypothetical protein Csa_7G073650 [Cucumis sativus][more]
gi|659109917|ref|XP_008454949.1|2.6e-9568.00PREDICTED: transcription factor bHLH95-like [Cucumis melo][more]
gi|778725107|ref|XP_004137111.2|3.5e-8469.57PREDICTED: transcription factor bHLH95 [Cucumis sativus][more]
gi|698511355|ref|XP_009800782.1|1.8e-4043.10PREDICTED: transcription factor bHLH95-like [Nicotiana sylvestris][more]
gi|225428845|ref|XP_002282369.1|3.1e-4043.04PREDICTED: transcription factor bHLH95 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004950.1Lsi03G004950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 71..97
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 69..98
score: 5.9
NoneNo IPR availablePANTHERPTHR11514MYCcoord: 45..248
score: 3.7
NoneNo IPR availablePANTHERPTHR11514:SF57SUBFAMILY NOT NAMEDcoord: 45..248
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G004950Csa7G073650Cucumber (Chinese Long) v2culsiB522
Lsi03G004950CSPI07G07620Wild cucumber (PI 183967)cpilsiB536
Lsi03G004950Cucsa.219850Cucumber (Gy14) v1cgylsiB367
Lsi03G004950CmaCh11G017490Cucurbita maxima (Rimu)cmalsiB116
Lsi03G004950CmaCh19G006030Cucurbita maxima (Rimu)cmalsiB484
Lsi03G004950CmoCh19G006210Cucurbita moschata (Rifu)cmolsiB468
Lsi03G004950CmoCh11G013630Cucurbita moschata (Rifu)cmolsiB103
Lsi03G004950Cla016013Watermelon (97103) v1lsiwmB268
Lsi03G004950MELO3C018451Melon (DHL92) v3.5.1lsimeB247
Lsi03G004950ClCG02G005950Watermelon (Charleston Gray)lsiwcgB233
Lsi03G004950MELO3C018451.2Melon (DHL92) v3.6.1lsimedB260
Lsi03G004950Cla97C02G032920Watermelon (97103) v2lsiwmbB226
Lsi03G004950Bhi05G000921Wax gourdlsiwgoB316
Lsi03G004950Cp4.1LG04g08060Cucurbita pepo (Zucchini)cpelsiB543
Lsi03G004950Cp4.1LG15g04870Cucurbita pepo (Zucchini)cpelsiB208
Lsi03G004950CsGy7G007190Cucumber (Gy14) v2cgyblsiB488
Lsi03G004950Carg22068Silver-seed gourdcarlsiB187
Lsi03G004950Carg26411Silver-seed gourdcarlsiB736
Lsi03G004950CsaV3_7G008580Cucumber (Chinese Long) v3cuclsiB555
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G004950Cucumber (Chinese Long) v3cuclsiB205
Lsi03G004950Cucumber (Chinese Long) v3cuclsiB300
Lsi03G004950Watermelon (97103) v2lsiwmbB236
Lsi03G004950Watermelon (97103) v2lsiwmbB244
Lsi03G004950Wax gourdlsiwgoB314
Lsi03G004950Wax gourdlsiwgoB323
Lsi03G004950Bottle gourd (USVL1VR-Ls)lsilsiB132
Lsi03G004950Cucumber (Gy14) v1cgylsiB403
Lsi03G004950Cucurbita maxima (Rimu)cmalsiB309
Lsi03G004950Cucurbita maxima (Rimu)cmalsiB662
Lsi03G004950Cucurbita moschata (Rifu)cmolsiB297
Lsi03G004950Cucurbita moschata (Rifu)cmolsiB650
Lsi03G004950Cucurbita pepo (Zucchini)cpelsiB171
Lsi03G004950Cucurbita pepo (Zucchini)cpelsiB348
Lsi03G004950Cucurbita pepo (Zucchini)cpelsiB454
Lsi03G004950Wild cucumber (PI 183967)cpilsiB188
Lsi03G004950Cucumber (Chinese Long) v2culsiB189
Lsi03G004950Melon (DHL92) v3.5.1lsimeB267
Lsi03G004950Watermelon (Charleston Gray)lsiwcgB242
Lsi03G004950Watermelon (Charleston Gray)lsiwcgB243
Lsi03G004950Watermelon (97103) v1lsiwmB255
Lsi03G004950Cucumber (Gy14) v2cgyblsiB103
Lsi03G004950Cucumber (Gy14) v2cgyblsiB173
Lsi03G004950Melon (DHL92) v3.6.1lsimedB271
Lsi03G004950Melon (DHL92) v3.6.1lsimedB280
Lsi03G004950Melon (DHL92) v3.6.1lsimedB285
Lsi03G004950Silver-seed gourdcarlsiB342