Lsi03G004370 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G004370
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_8
Locationchr03 : 4923142 .. 4925765 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCACGAGAGGGGAAGAACGCGGGCAGTTCTCGCTTCTCGGTCGTCGGAAGAGAGAACAAAATAGCGATGAAATTAGAAACCCAAAGAAGCTGAGTTAATTAAACAGTGGCGAAAATGGAGGATGGTGAAGAAGGCGAGTCGAGAGGCTTGGCAAATGCGTCAGCCTCATCTCTACAACCAAATTTCAAACCTAAAAGAGTCACTAACGAGCAGCTCTCGAAATTTCAGGTACTCTTTTTCCTTGATTTCCATTCCATTCGAATTTGTGTTTAGGGTTTAGGGTTTATTCAATATCATCCTTCATTATAATGCGAAAGAAAGAAAGAAACTTTTTGGTAGTGAAATTGTGAAAGGTGTTTCTGTATCAAATCAATATGGTGGTTGGAAAACCAATTCTAAATATTAGAAGGCTAAGGCTCCGTTTAGTAACTATGTGGTTTTTGAAACACTTATTCCACCTCAAAGTTTCTTTGGTTAGTTAATGTAGTTTTTAAAAATCTGTTTTTATTTTTGGAACTTAGCTAACAATTCAACTTTTTTACTTTGGAATGAAAAAACCCATGGTAAAAAATGATTAGGAAATAGGCACAATTATCAAAAAGCAAAAAGCAAAAACAAAATAGTTAGGTTACCAAATGGACCTTGAGTAGAAACGGTAGCTTTCACTTTCTTAGCAACGTTTTAATGGCTACTTTCTTTGGCTCCCTGCAGCATATGCTTCGTCAATTTTCTGATTACCTATGGTTTTGTTTATTTTATATGTTTGTCCCTCAATATACTCTCTCTATCGTTATCCTTACTCTTTATACTATCAATTTAATATGACAGGAGCTTCAAAGGAGGCGACTTCAGATTAAATCAAGGTCAAAGATAAGAAAGAATACAAAAGGTTTTTCCAGTTCATTGTATTGTGGTGTAGTTTTTTGTTGAAAGCTTATGTTTTAATTTTGAAATATTTGTTGGAAAAGTAGATGCGACTGGAAAATCTCAAATCAAACATCTCAGTACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGAGGTTGATTTTGGAAAAAAGAGCTACCATGTTCAGCAAGACAAGAAAAAAACTAAACTTCCATCCAAAAAGCTACACAAGTTACATTGGGGGTATGAGATATTATGGTACATTATATATATACATACACACATATGAGTGTCTGTAGTATTTAAGACACTCCAAACTGATGGGAAACCACAGTCAAGGTTTGTTTAGAAAGGCATATCTATGAAAGATTATCAACCTATTACGATTAATCCTATTCCTTATGTTGGTGGATTTGGTTAGGTAGATCTAGAAAGAGTTACAAGAATGGACTAAGAGCCTGCTTGGATTGACTTTCTAAGTGTTTATAAACACTTTTTTTAGACTTATAAATACTTATTTAAATGTTTAGAAAGTTAATCCAAGTGCACCCTAAACCTATTGGTCAAGAGTCGAGAGTAGTATTATTTGTAGTATTCAATGATTCCAGTATTATTATGTTCCAATTTTATCATGTTCCAAAGGGACAGTCATCTCTTAATCTGCTAGATTTCCAATGTATGACAAACATTGTAAACATATAAACATCATTAATTTTATAAATACTGTAAGCAAGAATGGACTATCCCTATCTCCGATCAAAGTAAAATTTCCAACGTAAGATTTGATAATTGGATGCGTAATTTATGAGTCACTCATTTGTCCAATAAGCCAGGCAATAATGTGCTGTTACTGGTAAGTGAAAGTCCTTAGACGAACTTTAAAAGGGATAAAAGAGAACAAGAACAACGTAAGAGCCAGGGTGGAGGGCACCCCCCAAAATAGAGAACTACACCATAAGAGCCTTCCAATCACTAATAATCATCTTTGTCTGAGTTGCCTCTAACTATTCCATGAGCTCTTTTGTATTTTTACTCAACTTGAGGGAATTTTTCTTTATCTCTCCCTGGCTGTTTGTGTCCTCTCTGGCTGTTGATGAAGTTTTAGTTACTTTTTCTTACTAAAACAGAACAAGAAATAGGAGAATTTGGATGGGAAAATACAAAGTAGACATAACCTCATCATATATCTTCTATAAATTTTTCTCTGATCTTATTTGTATGTCAGGCTTGACACCAAGGAACCATGGGAAAGGAAGGCAAACATGTAATGATATTTACATATAGGTGGAACGCAGCTGCCAAGTACTGTGGCGCTGAACTAGATTTTGGGAATTGAATGATAGAACTCGAAAGGTTTGTATTATGAGTGATGGATCAAATAATGTGCTGAATGGCCACTTATTGACTCAATTTTATACTTATATCTGCCCATATTGATCTTACAGACCTGAATTATGTGGAAACTCACACAGTGTGGACGATGAAGACTGGACAAAAAGATAGAGAAACTGTAACAAATTCTTGTGAATTGCCTCTAGGTATGATGTCTTCTGCGTTGGCACATAAAAGTAATACATTTCAAGATGATTTAACATTGGTTAGAGAACCATTTTTTACAAGGTTGTATTATAAGTTTATACTTCAACTTGAATGATTATGTGCCTAAGTAATGTTTTTTGAAATATGATGTGTGCTTTTATGTTGCTTTTGCTGTTAAA

mRNA sequence

AAATCACGAGAGGGGAAGAACGCGGGCAGTTCTCGCTTCTCGGTCGTCGGAAGAGAGAACAAAATAGCGATGAAATTAGAAACCCAAAGAAGCTGAGTTAATTAAACAGTGGCGAAAATGGAGGATGGTGAAGAAGGCGAGTCGAGAGGCTTGGCAAATGCGTCAGCCTCATCTCTACAACCAAATTTCAAACCTAAAAGAGTCACTAACGAGCAGCTCTCGAAATTTCAGGAGCTTCAAAGGAGGCGACTTCAGATTAAATCAAGGTCAAAGATAAGAAAGAATACAAAAGATGCGACTGGAAAATCTCAAATCAAACATCTCAGTACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGAGGTTGATTTTGGAAAAAAGAGCTACCATGTTCAGCAAGACAAGAAAAAAACTAAACTTCCATCCAAAAAGCTACACAAGTTACATTGGGGACCTGAATTATGTGGAAACTCACACAGTGTGGACGATGAAGACTGGACAAAAAGATAGAGAAACTGTAACAAATTCTTGTGAATTGCCTCTAGGTATGATGTCTTCTGCGTTGGCACATAAAAGTAATACATTTCAAGATGATTTAACATTGGTTAGAGAACCATTTTTTACAAGGTTGTATTATAAGTTTATACTTCAACTTGAATGATTATGTGCCTAAGTAATGTTTTTTGAAATATGATGTGTGCTTTTATGTTGCTTTTGCTGTTAAA

Coding sequence (CDS)

ATGGAGGATGGTGAAGAAGGCGAGTCGAGAGGCTTGGCAAATGCGTCAGCCTCATCTCTACAACCAAATTTCAAACCTAAAAGAGTCACTAACGAGCAGCTCTCGAAATTTCAGGAGCTTCAAAGGAGGCGACTTCAGATTAAATCAAGGTCAAAGATAAGAAAGAATACAAAAGATGCGACTGGAAAATCTCAAATCAAACATCTCAGTACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGAGGTTGATTTTGGAAAAAAGAGCTACCATGTTCAGCAAGACAAGAAAAAAACTAAACTTCCATCCAAAAAGCTACACAAGTTACATTGGGGACCTGAATTATGTGGAAACTCACACAGTGTGGACGATGAAGACTGGACAAAAAGATAG

Protein sequence

MEDGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDATGKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWGPELCGNSHSVDDEDWTKR
BLAST of Lsi03G004370 vs. TrEMBL
Match: A0A0A0LMI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404820 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 1

Query: 1   MEDGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDA 60
           MEDGEE ESRGL NAS+SSLQPN KP RVT EQ SKFQELQRRRLQIKSRSKIRKNTKDA
Sbjct: 1   MEDGEEDESRGLENASSSSLQPNSKPNRVTKEQFSKFQELQRRRLQIKSRSKIRKNTKDA 60

Query: 61  TGKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWG 118
           TGKSQ+ HL+TS+EVNEAEHSRLSNS+VDFG+KS  VQ DK KT LPSKKLHKLHWG
Sbjct: 61  TGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQHDKTKTTLPSKKLHKLHWG 117

BLAST of Lsi03G004370 vs. TrEMBL
Match: D7TT13_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g02710 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 59/121 (48.76%), Postives = 69/121 (57.02%), Query Frame = 1

Query: 5   EEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDATGKS 64
           EE E R  A AS  SLQ +FKP  VTN QLSKFQEL +RRLQIK  SK +K +KD  GKS
Sbjct: 5   EEDERREAAIASTPSLQSDFKPVGVTNLQLSKFQELHKRRLQIKQGSKYQKKSKDWAGKS 64

Query: 65  ---QIKHLSTSDEVNE-----AEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHW 118
              + K+L   D   E      E S +S S+ +  K    +QQ    T L SKK  KLHW
Sbjct: 65  YGKESKYLKVKDCTEENASITIEESSVSTSKSNNVKDKPSLQQGDIATHLASKKRQKLHW 124

BLAST of Lsi03G004370 vs. TrEMBL
Match: A0A0D2SME2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G182300 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 1

Query: 5   EEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDATGKS 64
           EE   R  A AS  SLQPNFKP  VT +QLSKFQEL RRRLQIK++SKI K  KD   + 
Sbjct: 8   EEDNRRETAIASTGSLQPNFKPVGVTPQQLSKFQELHRRRLQIKAKSKIHKKPKDQAKRF 67

Query: 65  QIKHLST-----SDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWG 118
             K++++     SD   + E   + NS+      +    QD    +L +KK  KLHWG
Sbjct: 68  CAKYMNSACSQESDSNTKVEDESVPNSKSHSEDDNPFTLQDNDVVQLATKKRQKLHWG 125

BLAST of Lsi03G004370 vs. TrEMBL
Match: A0A0B0Q1J6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08834 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-11
Identity = 52/121 (42.98%), Postives = 69/121 (57.02%), Query Frame = 1

Query: 2   EDGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDAT 61
           ++ +E   R  A AS  SLQPNFKP  VT +QLSKFQEL RRRLQIK++SKI K  KD  
Sbjct: 6   QEEDEDNRRETAIASTRSLQPNFKPVGVTTQQLSKFQELHRRRLQIKAKSKIHKKPKDQA 65

Query: 62  GKSQIKHLST-----SDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHW 118
            +   K++++     SD   + E   + NS+      +    QD    +L +KK  KLHW
Sbjct: 66  KRFCAKYMNSACSQESDSNTKVEDESVPNSKSHSEDDNPFTLQDNDAVQLATKKRQKLHW 125

BLAST of Lsi03G004370 vs. TrEMBL
Match: A0A061EH30_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019408 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-11
Identity = 53/121 (43.80%), Postives = 70/121 (57.85%), Query Frame = 1

Query: 2   EDGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDAT 61
           E+ EE   R  A AS  SLQPNFKP  V+++QLSKF+EL RRRLQ+K++SKI K  KD T
Sbjct: 6   EEEEEDNRREAAIASTLSLQPNFKPVGVSHQQLSKFRELHRRRLQLKAKSKIHKKPKDQT 65

Query: 62  GKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKK-----SYHVQQDKKKTKLPSKKLHKLHW 118
            K   + L+T D      ++++ +S V   K      +   QQD    +   KK  KLHW
Sbjct: 66  KKFHAEDLNTIDSQEADSNTKVEDSSVPNLKSHSEDDNPFAQQDNVVVQDAPKKRQKLHW 125

BLAST of Lsi03G004370 vs. TAIR10
Match: AT5G16160.1 (AT5G16160.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 9.8e-07
Identity = 40/115 (34.78%), Postives = 53/115 (46.09%), Query Frame = 1

Query: 3   DGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDATG 62
           + EE     L  AS  SLQPNF    +T +Q+SK QEL +RR+QIK+ +KI K    A+ 
Sbjct: 13  EAEENRKEALL-ASTLSLQPNFNRSNLTQKQISKLQELHKRRMQIKANAKIHKKKPKASK 72

Query: 63  KSQIKHLSTSDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWG 118
            SQ      S  + + E S+           +   Q   K      KK  KL WG
Sbjct: 73  NSQ------SKAIEDGESSKKLKEPTSSSSSTLEEQNHNKTVVTVPKKPQKLFWG 120

BLAST of Lsi03G004370 vs. NCBI nr
Match: gi|659081293|ref|XP_008441256.1| (PREDICTED: uncharacterized protein LOC103485441 isoform X1 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-45
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1

Query: 1   MEDGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDA 60
           MEDGEE ESRGLANAS+SSLQPNFKPKRVT EQLSKFQELQRRRLQIKSRSKIRKNTKDA
Sbjct: 1   MEDGEEYESRGLANASSSSLQPNFKPKRVTKEQLSKFQELQRRRLQIKSRSKIRKNTKDA 60

Query: 61  TGKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWG 118
           TGKSQIKHL+TS+EVNEAEHSRLSNS+VDFG+KS  VQ DK KT L SKKLHKLHWG
Sbjct: 61  TGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQDDKTKTTLSSKKLHKLHWG 117

BLAST of Lsi03G004370 vs. NCBI nr
Match: gi|449441732|ref|XP_004138636.1| (PREDICTED: uncharacterized protein LOC101215509 isoform X3 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.7e-43
Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 1

Query: 1   MEDGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTKDA 60
           MEDGEE ESRGL NAS+SSLQPN KP RVT EQ SKFQELQRRRLQIKSRSKIRKNTKDA
Sbjct: 1   MEDGEEDESRGLENASSSSLQPNSKPNRVTKEQFSKFQELQRRRLQIKSRSKIRKNTKDA 60

Query: 61  TGKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWG 118
           TGKSQ+ HL+TS+EVNEAEHSRLSNS+VDFG+KS  VQ DK KT LPSKKLHKLHWG
Sbjct: 61  TGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQHDKTKTTLPSKKLHKLHWG 117

BLAST of Lsi03G004370 vs. NCBI nr
Match: gi|778673071|ref|XP_011649921.1| (PREDICTED: uncharacterized protein LOC101215509 isoform X2 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 7.0e-39
Identity = 99/144 (68.75%), Postives = 105/144 (72.92%), Query Frame = 1

Query: 1   MEDGEEGESRGLANASASSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKIRKNTK-- 60
           MEDGEE ESRGL NAS+SSLQPN KP RVT EQ SKFQELQRRRLQIKSRSKIRKNTK  
Sbjct: 1   MEDGEEDESRGLENASSSSLQPNSKPNRVTKEQFSKFQELQRRRLQIKSRSKIRKNTKGF 60

Query: 61  -------------------------DATGKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKK 118
                                    DATGKSQ+ HL+TS+EVNEAEHSRLSNS+VDFG+K
Sbjct: 61  SSSLNWGVVSCEKVVFNFEVFTGKIDATGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEK 120

BLAST of Lsi03G004370 vs. NCBI nr
Match: gi|778673083|ref|XP_011649924.1| (PREDICTED: uncharacterized protein LOC101215509 isoform X4 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 5.7e-17
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1

Query: 58  KDATGKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWG 117
           +DATGKSQ+ HL+TS+EVNEAEHSRLSNS+VDFG+KS  VQ DK KT LPSKKLHKLHWG
Sbjct: 47  QDATGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQHDKTKTTLPSKKLHKLHWG 106

BLAST of Lsi03G004370 vs. NCBI nr
Match: gi|659081297|ref|XP_008441258.1| (PREDICTED: uncharacterized protein LOC103485441 isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-17
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 1

Query: 58  KDATGKSQIKHLSTSDEVNEAEHSRLSNSEVDFGKKSYHVQQDKKKTKLPSKKLHKLHWG 117
           +DATGKSQIKHL+TS+EVNEAEHSRLSNS+VDFG+KS  VQ DK KT L SKKLHKLHWG
Sbjct: 43  QDATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQDDKTKTTLSSKKLHKLHWG 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMI7_CUCSA1.9e-4384.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404820 PE=4 SV=1[more]
D7TT13_VITVI2.5e-1148.76Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g02710 PE=4 SV=... [more]
A0A0D2SME2_GOSRA3.3e-1144.92Uncharacterized protein OS=Gossypium raimondii GN=B456_007G182300 PE=4 SV=1[more]
A0A0B0Q1J6_GOSAR4.3e-1142.98Uncharacterized protein OS=Gossypium arboreum GN=F383_08834 PE=4 SV=1[more]
A0A061EH30_THECC7.3e-1143.80Uncharacterized protein OS=Theobroma cacao GN=TCM_019408 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G16160.19.8e-0734.78 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659081293|ref|XP_008441256.1|1.7e-4588.89PREDICTED: uncharacterized protein LOC103485441 isoform X1 [Cucumis melo][more]
gi|449441732|ref|XP_004138636.1|2.7e-4384.62PREDICTED: uncharacterized protein LOC101215509 isoform X3 [Cucumis sativus][more]
gi|778673071|ref|XP_011649921.1|7.0e-3968.75PREDICTED: uncharacterized protein LOC101215509 isoform X2 [Cucumis sativus][more]
gi|778673083|ref|XP_011649924.1|5.7e-1780.00PREDICTED: uncharacterized protein LOC101215509 isoform X4 [Cucumis sativus][more]
gi|659081297|ref|XP_008441258.1|7.5e-1781.67PREDICTED: uncharacterized protein LOC103485441 isoform X2 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004370.1Lsi03G004370.1mRNA