CmoCh04G031150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G031150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chrom
Location	Cmo_Chr04 : 21632911 .. 21634349 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATGAGGAAGGCGAGCGGAGAGCACCAGAAATTGCGTCAACTCCGTCGCTACAACCTAATTTCAGACCTAAACCTAAAGGAGTCACTCATGAGCAGCTCTCTAAATTTCAGGTTTTTTTCCCCTTGATTGCCTACAGATTATGGCTTCATTGTTCTTTTCCTATTGGATTTACTTCTTCAGCTGCTGCCTTTTGGTTTTTAATACTTCACTTCGCTTCTTTTGCTTCCGATAATTTTCTGTGCAACTAACGAGAATATTCTACTTTTCAATCTAAAGCCTTGCTCTTAAATTCATTGATTTAAAACAATTTGTTGTTGCATTTGTAGGGTTAGAAAACCGCTCTTCCCATAGAAACTTGTAATTTCTCTGGAATTATCTCCCTAAATAACATTCATTTTCTATTTGGTATTTTCTTCTATAGAAACCTACAAACTGTTGATAGAATGCCATGATCTGATGTGTTCTCTTCATCTTAATTCAAGGATGTAGTTTATGTAAAATGGGTGGTTGAAGGCATTGCTTATTTTGTTAATCCGTTATTCTTGCAGTTGAATTATTTGGGACAATTTCCTTAGTGCTTCCGACCCTCTTTGAATATCTCTGTTTGCAATTGAGTCTGCTAGCTTTCGGCCCCATTTCTATGGGAGGAGCTGAACTTAATTTGGTTTGTACCATCAGGCATATAAGATAGGAGTTAAGATCATTGTTTTAAGTGGCTTTTGTCACCAAAGAATTTTGAACAAAAAAGAAATAATTGTTACCAAGAGGAGAGAAGCTTCTTGGAAATGGAATTGTGAAAGATACTTCTATACATATGGTAGTTGGAATAGCAATGGTAAATATTATTAGGCTAGATTATTAGTTGAATAGAAACGGTAGGTTTTCACTTGACTGGAGTTCCGGAATCAGAACTCCGTTAAAGTTTTCTCTGTCAATTTTTGTATGGCCCTGTAAAAAAATGAATGTCAATTTCTCAGTGACGTTTTAATGGCTGCTCTTTGTGGTTACTGTTTTTCTTTATTGATATGTTCTTGCCCCTAAATATACTCTCTCTATTCATATTCATTACTCCTTATATTATCAATTTAATACGACAGGAGCTTCACAGGAGGCGACTTCAGATAAAATCAAGGTCAAAGATAAGAAAGAATACAAAAGGTTTTTCTAATTTATTGCATTGTAGTGTAGTTTTTTTGTTGTAAGCGTATGTTTTAATATTGAAGTCCTTGTTGGAAAAATAGGTTTGACTGGAAAATCTCAAATCAAGGATTTGAATACTATCGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGATGTCGATTTTGGGGAAAAGAGCTCCCATGTTCAGCGAGATAACACGACAACTACACTTCCATCCAAAAGGCTACACAAGTTACATTGGGGGTATGAGATATTATGA

mRNA sequence

ATGGCGGATGAGGAAGGCGAGCGGAGAGCACCAGAAATTGCGTCAACTCCGTCGCTACAACCTAATTTCAGACCTAAACCTAAAGGAGTCACTCATGAGCAGCTCTCTAAATTTCAGGAGCTTCACAGGAGGCGACTTCAGATAAAATCAAGGTCAAAGATAAGAAAGAATACAAAAGGTTTGACTGGAAAATCTCAAATCAAGGATTTGAATACTATCGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGATGTCGATTTTGGGGAAAAGAGCTCCCATGTTCAGCGAGATAACACGACAACTACACTTCCATCCAAAAGGCTACACAAGTTACATTGGGGGTATGAGATATTATGA

Coding sequence (CDS)

ATGGCGGATGAGGAAGGCGAGCGGAGAGCACCAGAAATTGCGTCAACTCCGTCGCTACAACCTAATTTCAGACCTAAACCTAAAGGAGTCACTCATGAGCAGCTCTCTAAATTTCAGGAGCTTCACAGGAGGCGACTTCAGATAAAATCAAGGTCAAAGATAAGAAAGAATACAAAAGGTTTGACTGGAAAATCTCAAATCAAGGATTTGAATACTATCGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGATGTCGATTTTGGGGAAAAGAGCTCCCATGTTCAGCGAGATAACACGACAACTACACTTCCATCCAAAAGGCTACACAAGTTACATTGGGGGTATGAGATATTATGA

Homology

[Close]

BLAST of CmoCh04G031150 vs. TrEMBL
Match: A0A0A0LMI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404820 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-35
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 4   EEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLTG 63
           EE E R  E AS+ SLQPN   KP  VT EQ SKFQEL RRRLQIKSRSKIRKNTK  TG
Sbjct: 5   EEDESRGLENASSSSLQPN--SKPNRVTKEQFSKFQELQRRRLQIKSRSKIRKNTKDATG 64

Query: 64  KSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHWGYE 121
           KSQ+  LNT +EVNEAEHSRLSNSDVDFGEKSS VQ D T TTLPSK+LHKLHWG +
Sbjct: 65  KSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQHDKTKTTLPSKKLHKLHWGLD 119

[Close]

BLAST of CmoCh04G031150 vs. TrEMBL
Match: A0A061EH30_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019408 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 1


Query: 3   DEEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLT 62
           +EE  RR   IAST SLQPNF  KP GV+H+QLSKF+ELHRRRLQ+K++SKI K  K  T
Sbjct: 8   EEEDNRREAAIASTLSLQPNF--KPVGVSHQQLSKFRELHRRRLQLKAKSKIHKKPKDQT 67

Query: 63  GKSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSH-----VQRDNTTTTLPSKRLHKLHW 121
            K   +DLNTID      ++++ +S V   +  S       Q+DN       K+  KLHW
Sbjct: 68  KKFHAEDLNTIDSQEADSNTKVEDSSVPNLKSHSEDDNPFAQQDNVVVQDAPKKRQKLHW 127

[Close]

BLAST of CmoCh04G031150 vs. TrEMBL
Match: A0A067EV86_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032353mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 61/128 (47.66%), Postives = 75/128 (58.59%), Query Frame = 1


Query: 1   MADEEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKG 60
           M  EE ERR   IAS+  LQPNF  K KGVT +QLSKFQELHRRRLQIKS+SK  K  KG
Sbjct: 6   MDKEEDERREAAIASSQYLQPNF--KVKGVTQDQLSKFQELHRRRLQIKSKSKFHKKPKG 65

Query: 61  L---TGKSQIKDLNT-----IDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRL 120
               T +S  +DLN+     +D     E S +SN      + SS +  D+   +L  K+ 
Sbjct: 66  SAYGTSRSGGEDLNSMPHGDVDASTTIEDSSVSNLKSHNNDISSSIPHDDVAESLAPKKR 125

[Close]

BLAST of CmoCh04G031150 vs. TrEMBL
Match: V4S8Z6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013056mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 60/125 (48.00%), Postives = 74/125 (59.20%), Query Frame = 1


Query: 4   EEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGL-- 63
           EE ERR   IAS+  LQPNF  K KGVT +QLSKFQELHRRRLQIKS+SK  K  KG   
Sbjct: 9   EEDERREAAIASSQYLQPNF--KVKGVTQDQLSKFQELHRRRLQIKSKSKFHKKPKGSAY 68

Query: 64  -TGKSQIKDLNT-----IDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKL 121
            T +S  +DLN+     +D     E S +SN      + SS +  D+   +L  K+  KL
Sbjct: 69  GTSRSGGEDLNSMPHGDVDASTTIEDSSVSNLKSHNNDISSSIPHDDVAESLAPKKRQKL 128

[Close]

BLAST of CmoCh04G031150 vs. TrEMBL
Match: A0A0D2SME2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G182300 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 55/123 (44.72%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 3   DEEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLT 62
           +EE  RR   IAST SLQPNF  KP GVT +QLSKFQELHRRRLQIK++SKI K  K   
Sbjct: 7   EEEDNRRETAIASTGSLQPNF--KPVGVTPQQLSKFQELHRRRLQIKAKSKIHKKPKDQA 66

Query: 63  GKSQIKDLNTI-----DEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHW 121
            +   K +N+      D   + E   + NS     + +    +DN    L +K+  KLHW
Sbjct: 67  KRFCAKYMNSACSQESDSNTKVEDESVPNSKSHSEDDNPFTLQDNDVVQLATKKRQKLHW 126

[Close]

BLAST of CmoCh04G031150 vs. TAIR10
Match: AT5G16160.1 (AT5G16160.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-09
Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 1


Query: 3   DEEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLT 62
           + E  R+   +AST SLQPNF      +T +Q+SK QELH+RR+QIK+ +KI K     +
Sbjct: 13  EAEENRKEALLASTLSLQPNFNRS--NLTQKQISKLQELHKRRMQIKANAKIHKKKPKAS 72

Query: 63  GKSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHWGYE 121
             SQ K       + + E S+           +   Q  N T     K+  KL WG +
Sbjct: 73  KNSQSK------AIEDGESSKKLKEPTSSSSSTLEEQNHNKTVVTVPKKPQKLFWGLD 122

[Close]

BLAST of CmoCh04G031150 vs. NCBI nr
Match: gi|659081293|ref|XP_008441256.1| (PREDICTED: uncharacterized protein LOC103485441 isoform X1 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 5.0e-36
Identity = 91/117 (77.78%), Postives = 95/117 (81.20%), Query Frame = 1


Query: 4   EEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLTG 63
           EE E R    AS+ SLQPNF  KPK VT EQLSKFQEL RRRLQIKSRSKIRKNTK  TG
Sbjct: 5   EEYESRGLANASSSSLQPNF--KPKRVTKEQLSKFQELQRRRLQIKSRSKIRKNTKDATG 64

Query: 64  KSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHWGYE 121
           KSQIK LNT +EVNEAEHSRLSNSDVDFGEKSS VQ D T TTL SK+LHKLHWG +
Sbjct: 65  KSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQDDKTKTTLSSKKLHKLHWGLD 119

[Close]

BLAST of CmoCh04G031150 vs. NCBI nr
Match: gi|449441732|ref|XP_004138636.1| (PREDICTED: uncharacterized protein LOC101215509 isoform X3 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-35
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 4   EEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLTG 63
           EE E R  E AS+ SLQPN   KP  VT EQ SKFQEL RRRLQIKSRSKIRKNTK  TG
Sbjct: 5   EEDESRGLENASSSSLQPN--SKPNRVTKEQFSKFQELQRRRLQIKSRSKIRKNTKDATG 64

Query: 64  KSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHWGYE 121
           KSQ+  LNT +EVNEAEHSRLSNSDVDFGEKSS VQ D T TTLPSK+LHKLHWG +
Sbjct: 65  KSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQHDKTKTTLPSKKLHKLHWGLD 119

[Close]

BLAST of CmoCh04G031150 vs. NCBI nr
Match: gi|778673071|ref|XP_011649921.1| (PREDICTED: uncharacterized protein LOC101215509 isoform X2 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 7.5e-32
Identity = 89/144 (61.81%), Postives = 94/144 (65.28%), Query Frame = 1


Query: 4   EEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGL-- 63
           EE E R  E AS+ SLQPN   KP  VT EQ SKFQEL RRRLQIKSRSKIRKNTKG   
Sbjct: 5   EEDESRGLENASSSSLQPN--SKPNRVTKEQFSKFQELQRRRLQIKSRSKIRKNTKGFSS 64

Query: 64  -------------------------TGKSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSS 121
                                    TGKSQ+  LNT +EVNEAEHSRLSNSDVDFGEKSS
Sbjct: 65  SLNWGVVSCEKVVFNFEVFTGKIDATGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSS 124

[Close]

BLAST of CmoCh04G031150 vs. NCBI nr
Match: gi|645279072|ref|XP_008244530.1| (PREDICTED: uncharacterized protein LOC103342672 [Prunus mume])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 3   DEEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLT 62
           D+E ER+   IASTP LQPN+  KP+ +T +QLSKFQELHRRRLQIKS SKI K  KG T
Sbjct: 6   DKEDERKEAAIASTPCLQPNY--KPRRITQDQLSKFQELHRRRLQIKSTSKIEKKPKGGT 65

Query: 63  GKSQIKDLNTIDEVNE-----AEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHW 121
           GKS  K LN     N+      E+S   NS+    E SS VQ++   T    ++  KLHW
Sbjct: 66  GKSHSKGLNAKHSANQDSTVPIENSTNFNSESHQKESSSLVQQEGIATYHAPQKRQKLHW 125

[Close]

BLAST of CmoCh04G031150 vs. NCBI nr
Match: gi|778673083|ref|XP_011649924.1| (PREDICTED: uncharacterized protein LOC101215509 isoform X4 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-17
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 62  TGKSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHWGYE 121
           TGKSQ+  LNT +EVNEAEHSRLSNSDVDFGEKSS VQ D T TTLPSK+LHKLHWG +
Sbjct: 50  TGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQHDKTKTTLPSKKLHKLHWGLD 108

The following BLAST results are available for this feature:

BLAST of CmoCh04G031150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G031150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMI7_CUCSA	1.7e-35	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404820 PE=4 SV=1	[more]
A0A061EH30_THECC	1.4e-16	47.15	Uncharacterized protein OS=Theobroma cacao GN=TCM_019408 PE=4 SV=1	[more]
A0A067EV86_CITSI	2.6e-15	47.66	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032353mg PE=4 SV=1	[more]
V4S8Z6_9ROSI	4.4e-15	48.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013056mg PE=4 SV=1	[more]
A0A0D2SME2_GOSRA	1.4e-13	44.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G182300 PE=4 SV=1	[more]

BLAST of CmoCh04G031150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16160.1	9.4e-09	33.90	unknown protein	[more]

BLAST of CmoCh04G031150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081293\|ref\|XP_008441256.1\|	5.0e-36	77.78	PREDICTED: uncharacterized protein LOC103485441 isoform X1 [Cucumis melo]	[more]
gi\|449441732\|ref\|XP_004138636.1\|	2.5e-35	75.21	PREDICTED: uncharacterized protein LOC101215509 isoform X3 [Cucumis sativus]	[more]
gi\|778673071\|ref\|XP_011649921.1\|	7.5e-32	61.81	PREDICTED: uncharacterized protein LOC101215509 isoform X2 [Cucumis sativus]	[more]
gi\|645279072\|ref\|XP_008244530.1\|	1.0e-17	50.41	PREDICTED: uncharacterized protein LOC103342672 [Prunus mume]	[more]
gi\|778673083\|ref\|XP_011649924.1\|	5.2e-17	79.66	PREDICTED: uncharacterized protein LOC101215509 isoform X4 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G031150.1	CmoCh04G031150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G031150	CmaCh04G029940	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G031150	Cla011875	Watermelon (97103) v1	cmowmB723
CmoCh04G031150	Csa2G404820	Cucumber (Chinese Long) v2	cmocuB684
CmoCh04G031150	MELO3C008145	Melon (DHL92) v3.5.1	cmomeB671
CmoCh04G031150	ClCG11G007840	Watermelon (Charleston Gray)	cmowcgB622
CmoCh04G031150	CSPI02G25250	Wild cucumber (PI 183967)	cmocpiB695
CmoCh04G031150	Lsi03G004370	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G031150	Cp4.1LG01g25820	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G031150	MELO3C008145.2	Melon (DHL92) v3.6.1	cmomedB759
CmoCh04G031150	CsaV3_2G033760	Cucumber (Chinese Long) v3	cmocucB0812
CmoCh04G031150	Cla97C11G215640	Watermelon (97103) v2	cmowmbB708
CmoCh04G031150	Bhi04G002028	Wax gourd	cmowgoB0857
CmoCh04G031150	CsGy2G024900	Cucumber (Gy14) v2	cgybcmoB236
CmoCh04G031150	Carg06066	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G031150	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G031150	Silver-seed gourd	carcmoB1454
CmoCh04G031150	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G031150	Cucumber (Gy14) v1	cgycmoB0166
CmoCh04G031150	Cucurbita maxima (Rimu)	cmacmoB308