Lsi03G004160 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G004160
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCCCH zinc finger protein
Locationchr03 : 4752671 .. 4757391 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTAAGGTTTATGTAACTTTTCCATTGGGCTTCAAAATCAGAACTGAGAATTCAAGTTTCAGATTGTAAAGAAAAGATGGGCATGGCGGATTGAAGAACAAGTTCTTTGGGTACTATATTTTTTTTTTTATTTTTTTTATTTTCCTTTCTGTTTACGTTTCTATGAGGGGAAAGAAGGCTGTTTTTTGTGATGCCAAAATGATTTGTGTGTTCTTTCTTTCAAAAGCATCCATCATTATATATATTAAGTTTGATTATATGTTTTAATATTTTCTTTTAATTGATGATATGAATTAATTGATCATATTCACATGGGTGATCTGGGTTAGTTAAGTTTTTTTTTTCTTTGAAATTAATAAATTTCAATTTATGTTTTCTATTTGCCATTGAGTTTAGGAAAAAAAAAGGAGAGAGTCATTTCGACGAATTTTGGAATGGAAAATTACTATGAACACAAAATATCAAACTATATATTTATAAATATAAAAAAATTTCACTATCTATCAGCAATAAATCATGATAGAATTCTATTGTTTGAGCAATAGACTTCTATCACTGTCTATCGCTCAAGCACTATCTATCGCTAAAGCGATAGAATTCTATCGTGGTCTATTACTAATAGACAGTAAAAAAATTTCTATATTTGAAAACAACCCTTTTGGAATAGGTTATTATTTCATTTCTCTATATAATTTAGGAATGGTCACAATTTTTTGTTTACATTTTATAATTTTTTATAATATTTTTAAAGTTTTAAATTTAGTTAATATCATTTCTTTTAGTTCGGGTGAAAATTTAAACCTATAGTATAAGTTAATCTATATCATGCCACCCTTTTTGTTACATATTAAAAAAAAATTATAATAATTCAATTTTTTGAAAAAGAAATATTTACAACGTCAAAAATTTTAATTGGGTTAGTAGAGGGCATCTAAATATTTTTTCATAAGTCGAAAGCATAGCTCTTAAAATTTGACCTCATAAATGACATCATTCTGGTTGCTACTTTTGTTATATTTTGTACTTTAATTTTACTAATTGTGTTAATTGATTAAGATTTTCTAAGTGAGTAAAAGAGGTTAACCATATTTAATTAAATGGTAGAAACCAAAAAATAAGTTCAAATTCTAGGACAACAAATTTTCTTTTTCTTTTATTTTGTTTTTTTAAAAAAGAAAGTAATTATTAATTAAATTAAAAAAACTTAGATGAAGCTGCACCATGCTTATTTTCAATAAATCTAAAATTTAGTTCTTCAAAATTAATTTTTACGAGAATTAATTAAAAAATAATATAACTTTTATGTCAGAAAATAAAATATGTGAATATGTTGTCAAACTTTATAGTAAAAAATGCTATAGATAACAATTTTTTTTAAAAAAATAAACAATAAACTAATATTGAAGACTAAATTATAATAAAAATTGGACAATAAAAAATAGAACGACTAAAAATTAAATAAAGTATAAAAAAATAATACATGAATTGCCCTAATTAATTGAGAAATGTGAATTGAAATTGAAGTTAAGAAATAAATAGAAAATTTAGAATTACAAAAACCAAATTGAAATTAAGAATTGAATGATTTTTTTGTTTGTTTTTTTGGTATTAATTTAGTCTGAGGCAGAGAGTTTCAATGGAAGAGGAGATGTGTCCGGCATTGCCGTCGAGTCTTTCTTCAACAACCGAAGTGTCAGCGGCGGAAATGGAAGATTTCAGCCTGCATTTCGCTTCAATGTATCATTCAATTTTTCCTCCATTATTATCTTCCTCCTCTCTTCCAACCTCTCTTTCATTCACTCCCTCCCCCTCCTCCTCCATCTCCTCCGCCGACGACGACCACAACCACCACTGCACCGTCGCCGCCAGTTCCACCACTGACGACCTCCTTTTTCAGGCCCGCCTTATACTCGAACACCGTCACCTCCGTCACCGCCACGATCTCTCCCTCCGCCGCCTCCGTCAAGTCGCTGAAGATGCTGATTATCTCCGGCGGGAGAATGCCCAGCTCCGATTGGCCAACGCCGAGCTCGTGAAGGTTATTTCGTCGAAGACGGCCGTTGACGATCTCGTTTCAATTCCGAATTCTCATCTCCGGTCTCTGATTGGAAGCGGCCAAAGTGGGGAAGAAATTGGTTATGATATAATCAGTCCGACGAGTGTGATCGGAAAATACAATGACCAGTTCGACGGAAGGAATGATCTCCGCCGGATCTCTCTTCCAAAGAGCATTTCCGTCCGCTCTGCAACTGCCGCCGCCGCTTCACTCAACATCCAATCGGTAGGCTTCCTCAACTTATTGTTATTATTATTTTGTTTATTTTATTGTTTCCCCCTTGTGGGGACATTGAATTACTTGAAAAAAAAAATTAAATTTCAAAAATACTAAAATGTCTAAAATGTTCCTATGTCAATTTTACGAAAATATCAAATTGTCAATGTCCAATATTTGAAAATAGAAAAATTTTTAAAAATAGAAAAATAAAGAAAACTATTCACACACAATAGCAAAATTTTTAGATAGTTGTGATAGACGCTGATAGAAGTCGATCATCGTCTATCCGTTATAGAAATGATAGAAGTCTATCACTGATAGATGTTGATAGAAGTCTATCAATGTCTATCAATATTTTTTTTACTATTTTCTGTAAATATTTTGATATTTTTTTTTCTATTTTTGAAAATTTTCATTTAAATTAATTAATAAACATTTCACATTTTAATAATGAATTAAAATGTTTATTATTAATATTATATGTTCACGTCATTAGTTACATTATAAATTTCTTTATGTTTCATTGATTTTTATGATATAATGGTAATTATGTTGATTCACCTTCATGTCGATGTCGAGCTCATGGATATGTAGAGTATCTATGAAAATGTTGTGACATGTTGATGAAAATTAATACCCTAACTAGAACTTTGTCATTTGTTTAAAAAATATTCACATTCTTTCAAAATTTACAATATTGGACAATAATGACCTGGAACGACATAATTAATTATAATCCAGAACGAAAATTGAGACTCAAACATGACACACTATTTAAGGTCATTACTATATTCATTTCTGGTTTTAATATAAATCTAAAATTTCTAAAATATTTCTATTTGAAGAGTATTTTTAATTTGCAATATTTATAAAAGTTAGATCTCAAGACATGACGAAGATGCTAAAGATGTGTCAACCAAGTTGAAATGTTTTCGTGCACTTCCTAATCTCTCTCATCTAGTATCTTGTTTAAAAAAAAAAAGAATATAAATATTTTTTAAACAAAGTTGATATATATATATATATTGTAATTTAACAAAAAAAAAAAATCATTGTGATGGTCCGTTTCAATAATTTGTTTTCTTATCGCTTTTCTTCAGTTATTTTTATTTTGGTCTTCAAATTTTCTAATTACTACAAGCTACTATTCTATTTGAGATATACTTTTTTGAGTCGCAATCATCTTTTTCGGTCCACTCATTAGTTGCTTGATCCATCTCTAAAATTGTTTAACGAAGTAGTGTTTAGATAAGTATTATTCTTACTAAGGATTTAAATACAGTGTTAGATATGTCTCAATTTTATAATAGGGTATTAATGTAGGAATATAAAAAAAAAAATGTCTTTTTTTAAGAACATCAATGAAAATGTTAATGTTAATAGTTTTTTTTTTTTTTTTTTTTTTTATTTCAATAAAATATTTAAATGAATAAGTATTTCAAAGTTTAACCTATTACTCCAAGGGCTACTTGATGAATTACAACCTTAATAGGACTTTCAAACCTATATCTAATAAGTTGTTTAATTTTTGAAAAATGTATTTAAGAAATATATATATCTAAAATTTTTAAGACTGTTTTTAAATATAGAAAAATGAAAAATTTCATTATCCGATAAACCACAATAGACTTCGTTGATAGTAAAAATTTTTATATTCTTTCTATTTATAATAATTTTCTAAATTTTTATTGTTGTATTTAATATAAGGTTCCACTAATAAATTAAAGAAGTTTTAATTTCGTTAAGGTAAAAGAAGTTATTAGGTACAAGACAAAAATTTAGACAGTTATTAGGGACATAAATTGAAAGTTAGATTTGGTTATAGCAGCGCCGGGCGTGCACTCCGATGAGTGATGGTGGGAGCAGAAAAAGAGAAGAGGAAGCGGCAGAATTGGAGATATACAATCAAGGCATGACCAAGACGGAGCTATGCAACAAATGGCAGGAGACCGGCGGCTGCCCTTACGGCAACCATTGCCGATTTGCTCATGGACTTGAAGAGCTCCGGCCAATCATGAGACACCCACGTTATAAGACACAAATGTGTAGAATGGTACTCGCCGGTGAAAAGTGTCCTTATGGTCATCGGTGTCATTTTCGTCATTCTCTTAGCAAACAATAAAAGACGACAACAACAATAACGACAACGACAACAACACATACCGAAAGTACTTAACAAGTCCGTAATAAAGACCAAACAAAACATCAGAATTCAACGATTTTAGAATGAATAAAGGGAAAAAAAAAGATTTACTTGTGTCTTTGTAGTGTATATAATAATGACCTTATATATATTTGTTGTTGTTATTATTATTATTATTATTTTGATTTATTTGTGGAATGATTTAAAGATTTCTTTTCCTTCTTTGAAAATGAATATTGTATATGATTCAAATGTTGAATATGTACTGATACAGCAGAAATAAAAAAGAATTATATATATGT

mRNA sequence

TGTTAAGGTTTATGTAACTTTTCCATTGGGCTTCAAAATCAGAACTGAGAATTCAAGTTTCAGATTGTAAAGAAAAGATGGGCATGGCGGATTGAAGAACAAGTTCTTTGGTCTGAGGCAGAGAGTTTCAATGGAAGAGGAGATGTGTCCGGCATTGCCGTCGAGTCTTTCTTCAACAACCGAAGTGTCAGCGGCGGAAATGGAAGATTTCAGCCTGCATTTCGCTTCAATGTATCATTCAATTTTTCCTCCATTATTATCTTCCTCCTCTCTTCCAACCTCTCTTTCATTCACTCCCTCCCCCTCCTCCTCCATCTCCTCCGCCGACGACGACCACAACCACCACTGCACCGTCGCCGCCAGTTCCACCACTGACGACCTCCTTTTTCAGGCCCGCCTTATACTCGAACACCGTCACCTCCGTCACCGCCACGATCTCTCCCTCCGCCGCCTCCGTCAAGTCGCTGAAGATGCTGATTATCTCCGGCGGGAGAATGCCCAGCTCCGATTGGCCAACGCCGAGCTCGTGAAGGTTATTTCGTCGAAGACGGCCGTTGACGATCTCGTTTCAATTCCGAATTCTCATCTCCGGTCTCTGATTGGAAGCGGCCAAAGTGGGGAAGAAATTGGTTATGATATAATCAGTCCGACGAGTGTGATCGGAAAATACAATGACCAGTTCGACGGAAGGAATGATCTCCGCCGGATCTCTCTTCCAAAGAGCATTTCCGTCCGCTCTGCAACTGCCGCCGCCGCTTCACTCAACATCCAATCGCAGCGCCGGGCGTGCACTCCGATGAGTGATGGTGGGAGCAGAAAAAGAGAAGAGGAAGCGGCAGAATTGGAGATATACAATCAAGGCATGACCAAGACGGAGCTATGCAACAAATGGCAGGAGACCGGCGGCTGCCCTTACGGCAACCATTGCCGATTTGCTCATGGACTTGAAGAGCTCCGGCCAATCATGAGACACCCACGTTATAAGACACAAATGTGTAGAATGGTACTCGCCGGTGAAAAGTGTCCTTATGGTCATCGGTGTCATTTTCGTCATTCTCTTAGCAAACAATAAAAGACGACAACAACAATAACGACAACGACAACAACACATACCGAAAGTACTTAACAAGTCCGTAATAAAGACCAAACAAAACATCAGAATTCAACGATTTTAGAATGAATAAAGGGAAAAAAAAAGATTTACTTGTGTCTTTGTAGTGTATATAATAATGACCTTATATATATTTGTTGTTGTTATTATTATTATTATTATTTTGATTTATTTGTGGAATGATTTAAAGATTTCTTTTCCTTCTTTGAAAATGAATATTGTATATGATTCAAATGTTGAATATGTACTGATACAGCAGAAATAAAAAAGAATTATATATATGT

Coding sequence (CDS)

ATGGAAGAGGAGATGTGTCCGGCATTGCCGTCGAGTCTTTCTTCAACAACCGAAGTGTCAGCGGCGGAAATGGAAGATTTCAGCCTGCATTTCGCTTCAATGTATCATTCAATTTTTCCTCCATTATTATCTTCCTCCTCTCTTCCAACCTCTCTTTCATTCACTCCCTCCCCCTCCTCCTCCATCTCCTCCGCCGACGACGACCACAACCACCACTGCACCGTCGCCGCCAGTTCCACCACTGACGACCTCCTTTTTCAGGCCCGCCTTATACTCGAACACCGTCACCTCCGTCACCGCCACGATCTCTCCCTCCGCCGCCTCCGTCAAGTCGCTGAAGATGCTGATTATCTCCGGCGGGAGAATGCCCAGCTCCGATTGGCCAACGCCGAGCTCGTGAAGGTTATTTCGTCGAAGACGGCCGTTGACGATCTCGTTTCAATTCCGAATTCTCATCTCCGGTCTCTGATTGGAAGCGGCCAAAGTGGGGAAGAAATTGGTTATGATATAATCAGTCCGACGAGTGTGATCGGAAAATACAATGACCAGTTCGACGGAAGGAATGATCTCCGCCGGATCTCTCTTCCAAAGAGCATTTCCGTCCGCTCTGCAACTGCCGCCGCCGCTTCACTCAACATCCAATCGCAGCGCCGGGCGTGCACTCCGATGAGTGATGGTGGGAGCAGAAAAAGAGAAGAGGAAGCGGCAGAATTGGAGATATACAATCAAGGCATGACCAAGACGGAGCTATGCAACAAATGGCAGGAGACCGGCGGCTGCCCTTACGGCAACCATTGCCGATTTGCTCATGGACTTGAAGAGCTCCGGCCAATCATGAGACACCCACGTTATAAGACACAAATGTGTAGAATGGTACTCGCCGGTGAAAAGTGTCCTTATGGTCATCGGTGTCATTTTCGTCATTCTCTTAGCAAACAATAA

Protein sequence

MEEEMCPALPSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSADDDHNHHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSGEEIGYDIISPTSVIGKYNDQFDGRNDLRRISLPKSISVRSATAAAASLNIQSQRRACTPMSDGGSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHSLSKQ
Homology
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BLAST of Lsi03G004160 vs. Swiss-Prot
Match: C3H14_ARATH (Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g66810 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 7.5e-52
Identity = 132/323 (40.87%), Postives = 175/323 (54.18%), Query Frame = 1 

Query: 10  PSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSADDDH 69
           P S  S    +    E+F+  FAS+Y+SIF P         SLS +P  SSS  S  D  
Sbjct: 24  PLSPISEQSFNNKHQEEFAASFASLYNSIFSP--------ESLSPSPPSSSSPPSRVD-- 83

Query: 70  NHHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLAN 129
                    +TT+  L QA+LILE+  L   ++L L RL+ +  + D LR EN  LR  N
Sbjct: 84  ---------TTTEHRLLQAKLILEYDELNEHYELCLNRLQSLMTELDSLRHENDSLRFEN 143

Query: 130 AELVKVISSKTAVDDLVSIP----NSHLRSLIGSGQSGEEIGYDIISPTSVIGKYNDQFD 189
           ++L+K+I   T+    VS P    N   R  I   +S +                     
Sbjct: 144 SDLLKLIRISTSSSSSVSPPAPIHNRQFRHQISDSRSAK--------------------- 203

Query: 190 GRNDLRRISLPKSISVRSA---------------TAAAASLNIQSQRRACTPMSDGGSRK 249
            RN+  R SLPKSISVRS                T+  +S ++ S ++ C   + G    
Sbjct: 204 -RNNQERNSLPKSISVRSQGYLKINHGFEASDLQTSQLSSNSVSSSQKVCVVQTKG---- 263

Query: 250 REEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCR 309
            E EA ELE+Y QGM KTELCNKWQETG C YG++C+FAHG++ELRP++RHPRYKT++CR
Sbjct: 264 -EREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCR 300

Query: 310 MVLAGEKCPYGHRCHFRHSLSKQ 314
           M++ G  CPYGHRCHFRHSL+ Q
Sbjct: 324 MMVTGAMCPYGHRCHFRHSLTDQ 300

[Close]
BLAST of Lsi03G004160 vs. Swiss-Prot
Match: C3H9_ORYSJ (Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=Os01g0645000 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-45
Identity = 123/294 (41.84%), Postives = 165/294 (56.12%), Query Frame = 1 

Query: 44  SSSSLPTSLSFTPSPSSSISSADDDHNHHCTVAASSTTDDLLFQARLILEHRHLRHRHDL 103
           S S L TS+S +PS S+S+    DD       AA+  T   L  ARL L+++ +  R++L
Sbjct: 54  SPSPLATSVSLSPSSSASLVDDGDDGG-----AAADATGQRLQLARLALQYQEVADRYEL 113

Query: 104 SLRRLRQVAEDADYLRRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSG 163
            L  L + AE+A  LR ENA+LR+ N++L   ++  +            +R L    + G
Sbjct: 114 CLSHLAEAAEEAAALRLENAELRVTNSDLALRLALLSGKHTAAVAVADEIRRL----RLG 173

Query: 164 EEIGYDIISPTSVIGKYNDQFDGRNDLRRISLPKSISVRS------------ATAAAASL 223
           E+             K       R   +   LPKSISVRS            ATA +A+ 
Sbjct: 174 EQ-------------KVAAATKERTPEKLAVLPKSISVRSTSYLKLNQQSQAATATSAAP 233

Query: 224 NIQSQRRACTPMS--------DGGSRKREEEA------AELEIYNQGMTKTELCNKWQET 283
           N +  R +  P +        DGG +  E++A      AELE+YNQGM KTELCNKW+ET
Sbjct: 234 N-RKPRTSSNPTNPPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEET 293

Query: 284 GGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHSLS 312
           G CPYG+ C+FAHG+ ELRP++RHPRYKT +CRMVLAG+ CPYGHRCHFRHSL+
Sbjct: 294 GDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHFRHSLT 324

[Close]
BLAST of Lsi03G004160 vs. Swiss-Prot
Match: C3H15_ARATH (Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.2e-45
Identity = 116/285 (40.70%), Postives = 162/285 (56.84%), Query Frame = 1 

Query: 57  SPSSSISSADDDHNHHCTVAASSTTDDLLFQARLILEHRH-LRHRHDLSLRRLRQVAEDA 116
           +P S   S+  + +    V++S  +D L    R I++ R  + +R  L   RL + + +A
Sbjct: 6   APFSYSGSSAGNSSSGGVVSSSLYSDQLYKSTRNIMQQRQDMVNREALCYTRLHEASLEA 65

Query: 117 DYLRRENAQLRLANAELVKVISS--KTAVDDLVS--IPNSHLRSLIGSGQSGEEIGYD-- 176
           + LR EN +LR  N  L   ++S  ++++ +      P   L +L   G   +E+     
Sbjct: 66  EALRLENTELRSMNLRLKNELNSLIRSSIQNRFDHRSPLRMLSNLSIGGNDADEVENQNR 125

Query: 177 IISPTSVIGKYNDQFDGRNDLRRISLPKSISVRS-----ATAAAASLNIQSQRR------ 236
            ++   V  K         DL R SLPKSISVRS     A+        QS +       
Sbjct: 126 TVNRDDVNDKSPTSVMENEDLNRSSLPKSISVRSNGYSKASQGGGGAAAQSGKPRGTVTK 185

Query: 237 --ACTPMSD--------GGSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRF 296
              C  +S         GG ++ +EE  E+E+YNQGMTKTELCNKWQETG CPYG+HC+F
Sbjct: 186 PGTCGQVSTTQKVYVRGGGKKEDQEEEIEVEVYNQGMTKTELCNKWQETGTCPYGDHCQF 245

Query: 297 AHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHSLSKQ 314
           AHG++ELRP++RHPRYKT++CRMVLAG+ CPYGHRCHFRHSLS+Q
Sbjct: 246 AHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQ 290

[Close]
BLAST of Lsi03G004160 vs. Swiss-Prot
Match: C3H39_ORYSJ (Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica GN=Os05g0576300 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-40
Identity = 115/303 (37.95%), Postives = 162/303 (53.47%), Query Frame = 1 

Query: 36  HSIFPP--LLSSSSLPTSLSFTPSPSSSISSADDDHNHHCTVAASSTTDDLLFQARLILE 95
           +S F P  +LS      + SF+   SSS S  DD         A++ T+  L  A L L+
Sbjct: 47  YSPFSPTRVLSPPPPRRAASFSHCSSSSDSVVDDGDG----AGAAAATEHRLHLAHLALQ 106

Query: 96  HRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLANAELV-KVISSKTAVDDLVSIPNSH 155
           ++ + +R +L L  L   A++A  LR+ENA+LR+AN +L  ++          +++    
Sbjct: 107 YQEMANRFELCLSHLADAADEAAALRQENAELRVANNDLACRIAKFGGRQSSAIALAGDL 166

Query: 156 LRSLIGSGQSGEEIGYDIISPTSVIGKYNDQFDGRNDL----RRISLPKSISVRSATAAA 215
            R  +   Q+   +     SP + +          N +    ++  LPKSIS+RS     
Sbjct: 167 RRLRLPKEQTVPALPPPPQSPPAAL---------MNPVAVPEKQAVLPKSISIRST--GY 226

Query: 216 ASLNIQSQRRACTPMSDGGSR-----------------KREEE---AAELEIYNQGMTKT 275
             LN   + R   P++ G  R                 K+EE      E E+YNQGM KT
Sbjct: 227 QKLNQGGKHRVSKPVNVGSQRVFVGIDGAEGGEHKVGVKKEEPPMGGLEFEVYNQGMFKT 286

Query: 276 ELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRH 312
           ELCNKW+ETG CPYG+ C+FAHG+ ELRP++RHPRYKTQ+CRMVLAG  CPYGHRCHFRH
Sbjct: 287 ELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRH 334

[Close]
BLAST of Lsi03G004160 vs. Swiss-Prot
Match: C3H21_ORYSJ (Putative zinc finger CCCH domain-containing protein 21 OS=Oryza sativa subsp. japonica GN=Os03g0301500 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-27
Identity = 101/287 (35.19%), Postives = 136/287 (47.39%), Query Frame = 1 

Query: 39  FPPLLSSSSLPTSLSFTPSPSSSISSADDDHNHHCTVAASSTTDDLLFQARLILEHRHLR 98
           FP L  +SSL   L+   SPSS +S       +   + AS+  +  + +A ++L  R + 
Sbjct: 181 FPSLPWASSLEKPLT---SPSSCVSDGRSG-GYSSPLGASAEREREVREAEMLL--RAIA 240

Query: 99  HRHDLSLRRLRQVAEDADYLRRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIG 158
            R+D    RLR  A +   L RE  +L   N  L  ++      ++L S       ++  
Sbjct: 241 ERYDDCFLRLRDAAAELSDLHRERLRLAAENLHLSLLL------EELESEQRKQASAMAP 300

Query: 159 -------SGQSGEEIGYDIISPTSVIGKYNDQFDGRNDLRRISLPKSISVRSATAAAAS- 218
                  + Q G      I SP      Y  Q   +   R    P+ + VR++ A   S 
Sbjct: 301 PKLEEDEAAQGGAPKSISIRSPG-----YLSQKPPQGQAR----PQRLRVRASQAMEISH 360

Query: 219 --LNIQSQRRACTPMSDGGSRKREEEA------AELEIYNQGMTKTELCNKWQETGGCPY 278
               I      C+P     +   E+E        E+E Y QG  KTELCNKW E G CPY
Sbjct: 361 PNCLIFVMGNQCSPKEAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKW-ERGACPY 420

Query: 279 GNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHS 310
           G  CRFAHGL+ELRP++RHPRYKT  C+M  A   CPYGHRCHFRHS
Sbjct: 421 GARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRHS 445

[Close]
BLAST of Lsi03G004160 vs. TrEMBL
Match: A0A0A0LQS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404980 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 2.9e-143
Identity = 269/316 (85.13%), Postives = 288/316 (91.14%), Query Frame = 1 

Query: 1   MEEEMCPAL-PSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPS 60
           MEEEMCP L PS+LS+TTE+SA E EDF  HFASMYHSIFPPLLSSSSLP SLSFTPSPS
Sbjct: 31  MEEEMCPPLLPSTLSTTTELSAVEYEDFGHHFASMYHSIFPPLLSSSSLPNSLSFTPSPS 90

Query: 61  SSISSADDDHNHHCTV-AASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYL 120
           S    ADDDHN+HCT  AA+STTDDLLFQARLILE+RHL HRHDL LRRLRQVAEDADYL
Sbjct: 91  S----ADDDHNNHCTTPAATSTTDDLLFQARLILENRHLHHRHDLCLRRLRQVAEDADYL 150

Query: 121 RRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSGEEIGYDIISPTSVIG 180
           R+ENAQLRLANAELVKVISSKTAVDDLVSIPNSHLR+LIG GQSG+EIGYD+ISPTSVIG
Sbjct: 151 RQENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRTLIGGGQSGDEIGYDMISPTSVIG 210

Query: 181 KYNDQFDGRNDLRRISLPKSISVRSATAAAA-SLNIQSQRRACTPMSDGGSRKREEEAAE 240
           KYNDQFDGRN+LRR SLP+SISVRSA AA++  LNI+S R A TP+SDGGSRKREEEA E
Sbjct: 211 KYNDQFDGRNNLRRNSLPRSISVRSAAAASSVQLNIKS-RGASTPVSDGGSRKREEEATE 270

Query: 241 LEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEK 300
            E+YNQG TKTELCNKWQE G CPYGNHCRFAHGLEELRP+MRHPRYKTQMCRMVLAGEK
Sbjct: 271 FEVYNQGTTKTELCNKWQEIGDCPYGNHCRFAHGLEELRPVMRHPRYKTQMCRMVLAGEK 330

Query: 301 CPYGHRCHFRHSLSKQ 314
           CPYGHRCHFRHSLS+Q
Sbjct: 331 CPYGHRCHFRHSLSEQ 341

[Close]
BLAST of Lsi03G004160 vs. TrEMBL
Match: M5WWD3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018479mg PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.7e-58
Identity = 152/327 (46.48%), Postives = 199/327 (60.86%), Query Frame = 1 

Query: 8   ALPSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSAD- 67
           A P+S  S+T        DF   FASMY SIFPP  +   LP+SLS TPS  SS S +D 
Sbjct: 6   AFPTSPDSSTR-------DFGSDFASMYRSIFPPKFT---LPSSLSLTPSTRSSFSDSDS 65

Query: 68  --DDHNHHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQ 127
             DDH+H+      + T   L QA+LILE + LR  +DL    LR +A++ D LR EN+ 
Sbjct: 66  NSDDHHHN-----HNATSQRLTQAQLILESQELRDHYDLCSAHLRDLADELDSLRLENSH 125

Query: 128 LRLANAELVKVISSKTAVDD--LVSIPNSHLRS-----------LIGSGQSGEEIGY--- 187
           LR AN++LVK++SS+ A     L S  +S  +S            +G G  G   G    
Sbjct: 126 LRSANSDLVKLLSSQAAFQSFLLSSSSSSAYQSPSTPSFLDDFRRLGFGSLGPRDGVVSD 185

Query: 188 --DIISPTSVIGKYNDQFDGRNDLRRISLPKSISVRSATAAAASLNIQSQRRACTPMSDG 247
               ISPTSVI +  ++FD    + R++LPKSISVRS+T       + SQ  + +P    
Sbjct: 186 EASDISPTSVIER--NRFDV---VDRVALPKSISVRSSTRP----RVPSQLFSGSPTQ-- 245

Query: 248 GSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKT 307
                    ++++++NQGM KTELCNKW+ETG CPYG +C+FAHG+ ELRP+MRHPRYKT
Sbjct: 246 ---------SQVKVFNQGMVKTELCNKWEETGTCPYGENCQFAHGVRELRPVMRHPRYKT 297

Query: 308 QMCRMVLAGEKCPYGHRCHFRHSLSKQ 314
           Q+CRMV AG KCPYGHRCHFRHSL++Q
Sbjct: 306 QLCRMVAAGGKCPYGHRCHFRHSLTEQ 297

[Close]
BLAST of Lsi03G004160 vs. TrEMBL
Match: W9S101_9ROSA (Zinc finger CCCH domain-containing protein 14 OS=Morus notabilis GN=L484_027093 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 146/331 (44.11%), Postives = 188/331 (56.80%), Query Frame = 1 

Query: 20  SAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSADDDHNHHCTVAASS 79
           ++ E  DF   F SMY SIFP    SS LP+SLS TPS  SS +               S
Sbjct: 36  NSPEARDFGAEFFSMYRSIFPA--KSSPLPSSLSLTPSTRSSSAGGGGG-----CYEDES 95

Query: 80  TTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLANAELVKVISSK 139
           TT+  L QARLILEH+ L  ++DL    LR + ++ D+LRRENA+LR  N EL+K++SS 
Sbjct: 96  TTEHRLIQARLILEHQQLNDQYDLFQTHLRNLNKEIDFLRRENAELRSVNTELLKILSSP 155

Query: 140 TAVDDLV----SIPNSHL----RSLIGSGQSGEEIGYDI-----ISPTSVIGKYNDQFDG 199
            A    +    + PN  L    R L   G    + G+ +     ISPTSV+     +   
Sbjct: 156 AAFQGFLLSSGAYPNQSLLDSFRRLDIGGVLAPDHGHGVEDVSDISPTSVMETNRIE--- 215

Query: 200 RNDLRRISLPKSISVRS-----------ATAAAASLNIQSQRRACTP------------- 259
           R    R+SLPKSISVRS             ++       S R    P             
Sbjct: 216 RPSAERVSLPKSISVRSTGYQKAISHSPGNSSREGPGRSSNRPRSVPNPIASRTETQRVY 275

Query: 260 MSDGGSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHP 314
           +   G ++ E    EL++YNQGM KTELCNKWQ+TG CPYG HC+FAHG+ ELRP++RHP
Sbjct: 276 VPGVGEKEEESGGLELDVYNQGMFKTELCNKWQQTGACPYGEHCQFAHGITELRPVIRHP 335

[Close]
BLAST of Lsi03G004160 vs. TrEMBL
Match: A0A059BTI7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02796 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-57
Identity = 145/328 (44.21%), Postives = 196/328 (59.76%), Query Frame = 1 

Query: 7   PALPSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSAD 66
           P  P S       S+   + F+ +F+++YHSIFPP    SS   S   TPS  SS SS  
Sbjct: 29  PHAPHSPPPAQSSSSPLNQQFAANFSALYHSIFPPNSPHSS---SALITPSLCSSASS-- 88

Query: 67  DDHNHHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLR 126
            D N + T  ++   +  L QARL+LE++ LR  +DL    L  + E+ D LRRENA+LR
Sbjct: 89  -DSNQNATARSTIAIEHRLNQARLVLEYQQLRDHYDLCRAHLNDLTEEIDSLRRENARLR 148

Query: 127 LANAELVKVIS--SKTAVDDLVSIPNSHLRSLIGSGQSGEEIGYDIISPTSVIGKYNDQF 186
           LAN+ELVK+++  S+  +            +  GS  S E++     SPTSV+ +   + 
Sbjct: 149 LANSELVKLLNLPSQGTLQSCFRRLGLSDTNATGSDFSSEDV--CSYSPTSVMDQSGYE- 208

Query: 187 DGRNDLRRISLPKSISVRSATAAAASLNIQSQRRACTPMSD------------------- 246
              ++  R+ LPKSISVRS+     +    S  R+  P+S                    
Sbjct: 209 --TSNPERVWLPKSISVRSSGYLKLNQPAASNSRSSRPVSQLRSPRAQEPPKVQQRVYVP 268

Query: 247 GGSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYK 306
           GG  K+E+EA E E+Y+QGM KTELCNKWQETG CPYG+HC+FAHG+ ELRP++RHPRYK
Sbjct: 269 GG--KKEQEALEFEVYSQGMFKTELCNKWQETGACPYGDHCQFAHGIAELRPVIRHPRYK 328

Query: 307 TQMCRMVLAGEKCPYGHRCHFRHSLSKQ 314
           T++CRMVLAG+ CPYGHRCHFRHSL++Q
Sbjct: 329 TEVCRMVLAGDMCPYGHRCHFRHSLTEQ 343

[Close]
BLAST of Lsi03G004160 vs. TrEMBL
Match: B9SQ02_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0467770 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.1e-57
Identity = 144/330 (43.64%), Postives = 189/330 (57.27%), Query Frame = 1 

Query: 10  PSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSF--TPSPSSSISSADD 69
           P  L S+   +    + F+  F ++YHSIFPP     +LP+SLSF  TPS +SS S+ DD
Sbjct: 22  PQQLESSPPSTHHHAQQFATDFTTLYHSIFPP--KPPALPSSLSFSLTPSSTSSASATDD 81

Query: 70  DHNHHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRL 129
                        T+  L QA LILE++ L   +DL L RL+ ++++ D LR+ENA LRL
Sbjct: 82  -------------TEYRLQQASLILEYQELCDHYDLCLSRLQSLSKEIDSLRQENADLRL 141

Query: 130 ANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSGEEIGYDIISPTSVIGKYNDQFDGR 189
            N +L++          L+SI + H R              +I  P+        +F+ R
Sbjct: 142 VNNDLLR----------LLSISSIHNRR-------------EIAEPS--------RFERR 201

Query: 190 NDLRRISLPKSISVRSA------------------------TAAAASLNIQSQRRACTPM 249
           N+  R+ LPKSISVRS+                           + S++ Q + R     
Sbjct: 202 NNTERVMLPKSISVRSSGYLKLNPAASSSSTRPLLASHNLDQLISGSVHQQQRVRVAGGG 261

Query: 250 SDGGSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPR 309
             GG  KREE A E+E+YNQGM KTELCNKWQETG CPYG+HC+FAHG+ ELRP++RHPR
Sbjct: 262 GGGGGNKREEAAVEMEVYNQGMWKTELCNKWQETGMCPYGDHCQFAHGITELRPVIRHPR 305

Query: 310 YKTQMCRMVLAGEKCPYGHRCHFRHSLSKQ 314
           YKTQ+CRMV+AGE CPYGHRCHFRHSLS Q
Sbjct: 322 YKTQVCRMVVAGEVCPYGHRCHFRHSLSDQ 305

[Close]
BLAST of Lsi03G004160 vs. TAIR10
Match: AT1G66810.1 (AT1G66810.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 205.7 bits (522), Expect = 4.2e-53
Identity = 132/323 (40.87%), Postives = 175/323 (54.18%), Query Frame = 1 

Query: 10  PSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSADDDH 69
           P S  S    +    E+F+  FAS+Y+SIF P         SLS +P  SSS  S  D  
Sbjct: 24  PLSPISEQSFNNKHQEEFAASFASLYNSIFSP--------ESLSPSPPSSSSPPSRVD-- 83

Query: 70  NHHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLAN 129
                    +TT+  L QA+LILE+  L   ++L L RL+ +  + D LR EN  LR  N
Sbjct: 84  ---------TTTEHRLLQAKLILEYDELNEHYELCLNRLQSLMTELDSLRHENDSLRFEN 143

Query: 130 AELVKVISSKTAVDDLVSIP----NSHLRSLIGSGQSGEEIGYDIISPTSVIGKYNDQFD 189
           ++L+K+I   T+    VS P    N   R  I   +S +                     
Sbjct: 144 SDLLKLIRISTSSSSSVSPPAPIHNRQFRHQISDSRSAK--------------------- 203

Query: 190 GRNDLRRISLPKSISVRSA---------------TAAAASLNIQSQRRACTPMSDGGSRK 249
            RN+  R SLPKSISVRS                T+  +S ++ S ++ C   + G    
Sbjct: 204 -RNNQERNSLPKSISVRSQGYLKINHGFEASDLQTSQLSSNSVSSSQKVCVVQTKG---- 263

Query: 250 REEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCR 309
            E EA ELE+Y QGM KTELCNKWQETG C YG++C+FAHG++ELRP++RHPRYKT++CR
Sbjct: 264 -EREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCR 300

Query: 310 MVLAGEKCPYGHRCHFRHSLSKQ 314
           M++ G  CPYGHRCHFRHSL+ Q
Sbjct: 324 MMVTGAMCPYGHRCHFRHSLTDQ 300

[Close]
BLAST of Lsi03G004160 vs. TAIR10
Match: AT1G68200.1 (AT1G68200.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-46
Identity = 116/285 (40.70%), Postives = 162/285 (56.84%), Query Frame = 1 

Query: 57  SPSSSISSADDDHNHHCTVAASSTTDDLLFQARLILEHRH-LRHRHDLSLRRLRQVAEDA 116
           +P S   S+  + +    V++S  +D L    R I++ R  + +R  L   RL + + +A
Sbjct: 6   APFSYSGSSAGNSSSGGVVSSSLYSDQLYKSTRNIMQQRQDMVNREALCYTRLHEASLEA 65

Query: 117 DYLRRENAQLRLANAELVKVISS--KTAVDDLVS--IPNSHLRSLIGSGQSGEEIGYD-- 176
           + LR EN +LR  N  L   ++S  ++++ +      P   L +L   G   +E+     
Sbjct: 66  EALRLENTELRSMNLRLKNELNSLIRSSIQNRFDHRSPLRMLSNLSIGGNDADEVENQNR 125

Query: 177 IISPTSVIGKYNDQFDGRNDLRRISLPKSISVRS-----ATAAAASLNIQSQRR------ 236
            ++   V  K         DL R SLPKSISVRS     A+        QS +       
Sbjct: 126 TVNRDDVNDKSPTSVMENEDLNRSSLPKSISVRSNGYSKASQGGGGAAAQSGKPRGTVTK 185

Query: 237 --ACTPMSD--------GGSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRF 296
              C  +S         GG ++ +EE  E+E+YNQGMTKTELCNKWQETG CPYG+HC+F
Sbjct: 186 PGTCGQVSTTQKVYVRGGGKKEDQEEEIEVEVYNQGMTKTELCNKWQETGTCPYGDHCQF 245

Query: 297 AHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHSLSKQ 314
           AHG++ELRP++RHPRYKT++CRMVLAG+ CPYGHRCHFRHSLS+Q
Sbjct: 246 AHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQ 290

[Close]
BLAST of Lsi03G004160 vs. TAIR10
Match: AT2G35430.1 (AT2G35430.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 1 

Query: 247 KTELCNKWQETGGCPYGNHCRFAHGLEEL 276
           KT +CNKWQ TG CP+G+HC FAHG  EL
Sbjct: 145 KTRICNKWQTTGYCPFGSHCHFAHGPSEL 173

[Close]
BLAST of Lsi03G004160 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 1 

Query: 238 LEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEEL 276
           ++I      KT +CNKW+ TG CP+G  C FAHG  EL
Sbjct: 253 IQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

[Close]
BLAST of Lsi03G004160 vs. NCBI nr
Match: gi|659081374|ref|XP_008441301.1| (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis melo])

HSP 1 Score: 517.3 bits (1331), Expect = 1.9e-143
Identity = 271/318 (85.22%), Postives = 289/318 (90.88%), Query Frame = 1 

Query: 1   MEEEMCPAL-PSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPS 60
           MEEEMCP L PSSLSSTTE+S AE EDFS HFASMYHSIFPPLLSSSSLP SLSFTPSPS
Sbjct: 1   MEEEMCPPLLPSSLSSTTELSVAEFEDFSQHFASMYHSIFPPLLSSSSLPNSLSFTPSPS 60

Query: 61  SSISSADDDHNHHCTVA-ASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYL 120
           S    ADDDHN+HCT A A+STTDDLL QARLILE+RHLRHRHDL LRRLRQV++DADYL
Sbjct: 61  S----ADDDHNNHCTTATATSTTDDLLVQARLILENRHLRHRHDLCLRRLRQVSDDADYL 120

Query: 121 RRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSGEEIGY-DIISPTSVI 180
           R+ENAQLRLANAELVKVISSKTA+DDLVSIPNSHLRSLIG GQSG+EIGY DIISPTSVI
Sbjct: 121 RQENAQLRLANAELVKVISSKTAIDDLVSIPNSHLRSLIGGGQSGDEIGYNDIISPTSVI 180

Query: 181 GKYNDQFDGRNDLRRISLPKSISVRSATAAAASL--NIQSQRRACTPMSDGGSRKREEEA 240
           GKYNDQFDGRN+L RISLPKSIS+RSA AAA+S   NI+  R ACTP+SDGGSRKREEEA
Sbjct: 181 GKYNDQFDGRNNLHRISLPKSISIRSAAAAASSAPPNIKL-RGACTPVSDGGSRKREEEA 240

Query: 241 AELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAG 300
            E E+YNQG TKTELCNKWQE G CPYGNHCRFAHGLEELRP+MRHPRYKTQMCRMVLAG
Sbjct: 241 TEFEVYNQGTTKTELCNKWQEIGDCPYGNHCRFAHGLEELRPVMRHPRYKTQMCRMVLAG 300

Query: 301 EKCPYGHRCHFRHSLSKQ 314
           +KCPYGHRCHFRHSLS+Q
Sbjct: 301 QKCPYGHRCHFRHSLSEQ 313

[Close]
BLAST of Lsi03G004160 vs. NCBI nr
Match: gi|449442060|ref|XP_004138800.1| (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis sativus])

HSP 1 Score: 516.2 bits (1328), Expect = 4.1e-143
Identity = 269/316 (85.13%), Postives = 288/316 (91.14%), Query Frame = 1 

Query: 1   MEEEMCPAL-PSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPS 60
           MEEEMCP L PS+LS+TTE+SA E EDF  HFASMYHSIFPPLLSSSSLP SLSFTPSPS
Sbjct: 1   MEEEMCPPLLPSTLSTTTELSAVEYEDFGHHFASMYHSIFPPLLSSSSLPNSLSFTPSPS 60

Query: 61  SSISSADDDHNHHCTV-AASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYL 120
           S    ADDDHN+HCT  AA+STTDDLLFQARLILE+RHL HRHDL LRRLRQVAEDADYL
Sbjct: 61  S----ADDDHNNHCTTPAATSTTDDLLFQARLILENRHLHHRHDLCLRRLRQVAEDADYL 120

Query: 121 RRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSGEEIGYDIISPTSVIG 180
           R+ENAQLRLANAELVKVISSKTAVDDLVSIPNSHLR+LIG GQSG+EIGYD+ISPTSVIG
Sbjct: 121 RQENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRTLIGGGQSGDEIGYDMISPTSVIG 180

Query: 181 KYNDQFDGRNDLRRISLPKSISVRSATAAAA-SLNIQSQRRACTPMSDGGSRKREEEAAE 240
           KYNDQFDGRN+LRR SLP+SISVRSA AA++  LNI+S R A TP+SDGGSRKREEEA E
Sbjct: 181 KYNDQFDGRNNLRRNSLPRSISVRSAAAASSVQLNIKS-RGASTPVSDGGSRKREEEATE 240

Query: 241 LEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEK 300
            E+YNQG TKTELCNKWQE G CPYGNHCRFAHGLEELRP+MRHPRYKTQMCRMVLAGEK
Sbjct: 241 FEVYNQGTTKTELCNKWQEIGDCPYGNHCRFAHGLEELRPVMRHPRYKTQMCRMVLAGEK 300

Query: 301 CPYGHRCHFRHSLSKQ 314
           CPYGHRCHFRHSLS+Q
Sbjct: 301 CPYGHRCHFRHSLSEQ 311

[Close]
BLAST of Lsi03G004160 vs. NCBI nr
Match: gi|700208028|gb|KGN63147.1| (hypothetical protein Csa_2G404980 [Cucumis sativus])

HSP 1 Score: 516.2 bits (1328), Expect = 4.1e-143
Identity = 269/316 (85.13%), Postives = 288/316 (91.14%), Query Frame = 1 

Query: 1   MEEEMCPAL-PSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPS 60
           MEEEMCP L PS+LS+TTE+SA E EDF  HFASMYHSIFPPLLSSSSLP SLSFTPSPS
Sbjct: 31  MEEEMCPPLLPSTLSTTTELSAVEYEDFGHHFASMYHSIFPPLLSSSSLPNSLSFTPSPS 90

Query: 61  SSISSADDDHNHHCTV-AASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYL 120
           S    ADDDHN+HCT  AA+STTDDLLFQARLILE+RHL HRHDL LRRLRQVAEDADYL
Sbjct: 91  S----ADDDHNNHCTTPAATSTTDDLLFQARLILENRHLHHRHDLCLRRLRQVAEDADYL 150

Query: 121 RRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSGEEIGYDIISPTSVIG 180
           R+ENAQLRLANAELVKVISSKTAVDDLVSIPNSHLR+LIG GQSG+EIGYD+ISPTSVIG
Sbjct: 151 RQENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRTLIGGGQSGDEIGYDMISPTSVIG 210

Query: 181 KYNDQFDGRNDLRRISLPKSISVRSATAAAA-SLNIQSQRRACTPMSDGGSRKREEEAAE 240
           KYNDQFDGRN+LRR SLP+SISVRSA AA++  LNI+S R A TP+SDGGSRKREEEA E
Sbjct: 211 KYNDQFDGRNNLRRNSLPRSISVRSAAAASSVQLNIKS-RGASTPVSDGGSRKREEEATE 270

Query: 241 LEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEK 300
            E+YNQG TKTELCNKWQE G CPYGNHCRFAHGLEELRP+MRHPRYKTQMCRMVLAGEK
Sbjct: 271 FEVYNQGTTKTELCNKWQEIGDCPYGNHCRFAHGLEELRPVMRHPRYKTQMCRMVLAGEK 330

Query: 301 CPYGHRCHFRHSLSKQ 314
           CPYGHRCHFRHSLS+Q
Sbjct: 331 CPYGHRCHFRHSLSEQ 341

[Close]
BLAST of Lsi03G004160 vs. NCBI nr
Match: gi|1009126226|ref|XP_015880037.1| (PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60
Identity = 153/344 (44.48%), Postives = 209/344 (60.76%), Query Frame = 1 

Query: 11  SSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSADDDHN 70
           S+ S+    S     DF   FASMY +IFPP     + P+SLS TPS + S S  +D+  
Sbjct: 31  STYSNFPAPSQENGRDFGADFASMYRAIFPP-----NFPSSLSLTPSTTHSSSCGEDE-- 90

Query: 71  HHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLANA 130
                  ++ T+  L QA LILE + LR   DL    L ++ ++ +YLRREN++LR AN 
Sbjct: 91  -------AAVTEHRLNQACLILECQELRDGFDLCRANLHEITKEVEYLRRENSELRSANT 150

Query: 131 ELVKVISSKTAVDDLV---SIPN-----SHLRSLIG-----SGQSGEEIGYDIISPTSVI 190
           ELVK++SS+T    ++   S PN     +  R  IG     +    EE+    ISPTSV+
Sbjct: 151 ELVKLLSSQTTFQSVLLSSSYPNRSFMQNFRRLNIGGTTAPNAHGSEEVSN--ISPTSVM 210

Query: 191 GKYNDQFDGRNDLRRISLPKSISVRSA-----TAAAASLNIQSQRRACT------PMSDG 250
              N++F  R++  RI+LPKSISVRS+       +A++ N+    R  T      P+  G
Sbjct: 211 --ENNRFQRRSNTERINLPKSISVRSSGYPKLNQSASASNVDGPSRISTRPQVTGPLVSG 270

Query: 251 ------------GSRKREEEA-----AELEIYNQGMTKTELCNKWQETGGCPYGNHCRFA 310
                       GS KR++++      ELE+YNQGM KTELCNKWQETG CPYG+HC+FA
Sbjct: 271 SQRVYVPAGCGSGSGKRDQDSEGGGDLELEVYNQGMFKTELCNKWQETGTCPYGDHCQFA 330

Query: 311 HGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHSLSKQ 314
           HG++ELRPI+RHPRYKT++CRMV+ G++CPYGHRCHFRHSL++Q
Sbjct: 331 HGIKELRPIIRHPRYKTEVCRMVMGGDRCPYGHRCHFRHSLTEQ 356

[Close]
BLAST of Lsi03G004160 vs. NCBI nr
Match: gi|1009126224|ref|XP_015880036.1| (PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 240.4 bits (612), Expect = 4.4e-60
Identity = 153/346 (44.22%), Postives = 209/346 (60.40%), Query Frame = 1 

Query: 11  SSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSADDDHN 70
           S+ S+    S     DF   FASMY +IFPP     + P+SLS TPS + S S  +D+  
Sbjct: 31  STYSNFPAPSQENGRDFGADFASMYRAIFPP-----NFPSSLSLTPSTTHSSSCGEDE-- 90

Query: 71  HHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLANA 130
                  ++ T+  L QA LILE + LR   DL    L ++ ++ +YLRREN++LR AN 
Sbjct: 91  -------AAVTEHRLNQACLILECQELRDGFDLCRANLHEITKEVEYLRRENSELRSANT 150

Query: 131 ELVKVISSKTAVDDLV---SIPN-----SHLRSLIG-----SGQSGEEIGYDIISPTSVI 190
           ELVK++SS+T    ++   S PN     +  R  IG     +    EE+    ISPTSV+
Sbjct: 151 ELVKLLSSQTTFQSVLLSSSYPNRSFMQNFRRLNIGGTTAPNAHGSEEVSN--ISPTSVM 210

Query: 191 GKYNDQFDGRNDLRRISLPKSISVRSA-----TAAAASLNIQSQRRACT------PMSDG 250
              N++F  R++  RI+LPKSISVRS+       +A++ N+    R  T      P+  G
Sbjct: 211 --ENNRFQRRSNTERINLPKSISVRSSGYPKLNQSASASNVDGPSRISTRPQVTGPLVSG 270

Query: 251 --------------GSRKREEEA-----AELEIYNQGMTKTELCNKWQETGGCPYGNHCR 310
                         GS KR++++      ELE+YNQGM KTELCNKWQETG CPYG+HC+
Sbjct: 271 SVQQRVYVPAGCGSGSGKRDQDSEGGGDLELEVYNQGMFKTELCNKWQETGTCPYGDHCQ 330

Query: 311 FAHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHSLSKQ 314
           FAHG++ELRPI+RHPRYKT++CRMV+ G++CPYGHRCHFRHSL++Q
Sbjct: 331 FAHGIKELRPIIRHPRYKTEVCRMVMGGDRCPYGHRCHFRHSLTEQ 358

The following BLAST results are available for this feature:
BLAST of Lsi03G004160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H14_ARATH7.5e-5240.87Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g668... [more]
C3H9_ORYSJ2.3e-4541.84Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=... [more]
C3H15_ARATH5.2e-4540.70Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g682... [more]
C3H39_ORYSJ1.7e-4037.95Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica GN... [more]
C3H21_ORYSJ1.7e-2735.19Putative zinc finger CCCH domain-containing protein 21 OS=Oryza sativa subsp. ja... [more]
BLAST of Lsi03G004160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQS7_CUCSA2.9e-14385.13Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404980 PE=4 SV=1[more]
M5WWD3_PRUPE1.7e-5846.48Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018479mg PE=4 SV=1[more]
W9S101_9ROSA1.1e-5744.11Zinc finger CCCH domain-containing protein 14 OS=Morus notabilis GN=L484_027093 ... [more]
A0A059BTI7_EUCGR1.4e-5744.21Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02796 PE=4 SV=1[more]
B9SQ02_RICCO4.1e-5743.64Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0467770 PE=4 SV=1[more]
BLAST of Lsi03G004160 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G66810.14.2e-5340.87 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G68200.12.9e-4640.70 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G35430.11.2e-0768.97 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G32360.13.0e-0650.00 Zinc finger (CCCH-type) family protein[more]
BLAST of Lsi03G004160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081374|ref|XP_008441301.1|1.9e-14385.22PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis melo][more]
gi|449442060|ref|XP_004138800.1|4.1e-14385.13PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis sativus][more]
gi|700208028|gb|KGN63147.1|4.1e-14385.13hypothetical protein Csa_2G404980 [Cucumis sativus][more]
gi|1009126226|ref|XP_015880037.1|2.6e-6044.48PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X2 [Ziziphus ju... [more]
gi|1009126224|ref|XP_015880036.1|4.4e-6044.22PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1 [Ziziphus ju... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0050794 regulation of cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004160.1Lsi03G004160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 279..310
score: 5.7E-12coord: 241..277
score: 1.7
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 247..271
score: 6.1
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 283..310
score: 0.0013coord: 245..272
score: 3.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 283..311
score: 13.629coord: 245..273
score: 15
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 242..277
score: 1.27E-10coord: 279..311
score: 4.7
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 16..313
score: 7.7
NoneNo IPR availablePANTHERPTHR12547:SF60ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14-RELATEDcoord: 16..313
score: 7.7