Lsi03G002380 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G002380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	HEAT repeat-containing protein
Location	chr03 : 2965854 .. 2966654 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAATTTTACCTAAATAAGAAAAAAAAAAAAAGGTGAAAAGACAGAGCGATCGGCAAACGATCGACTAATCAACACTGGACTCTGATTCACCGGCTTCAATCGACATAGAATTGCCACTCTGCACACTGGAGCAGCTCACTTCTTCTCGATTCCTTCTCACACTCTACAATGGTGAAGACTTACGTAAGAGAGAATGTGCCTCTCTCTCGTTTTGGTGTCTTGGTAGCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAACAGCCTCCGGAGCCCCTTCTCTGCTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCCAAGGTTCACTCTTTTAATTTCGCTGCATTTTCATGTTTAGCTAATTAGCATCCATATTGTCTTCTTTCGAATATGTTCTATTGGTTTTAACTGCAACTTTTACATTAACAAGATGAGATATTTAATTTTGCCACATTATGCGGATCTCGATGAATTTGATATCGGATGTGGAATTATTATGCGCAGTCAGTTTTATTGTTATATGTTTCTGCTCTTTTCATCATCGTTTCCGTCTTGCATTGTCTACGGGTGGGAATATCTGTCTTCATTGAGTATTTGGTTATGAAGTTTTAATTTGCCTCCGTGCTAATGAAGGTTATAGAGCTCCCATCATGTAATTGTAATTCAGCAGTATACGACTGGGGAGAATAAAGGAGACCGTCACATAAAAGCAGAGCACAAAGGCCTCCATAGATATTTAAAGAAGAAAATACAGTCGCATGTCTTGCTTACAATGGATAGCAAATAA

mRNA sequence

GTAAATTTTACCTAAATAAGAAAAAAAAAAAAAGGTGAAAAGACAGAGCGATCGGCAAACGATCGACTAATCAACACTGGACTCTGATTCACCGGCTTCAATCGACATAGAATTGCCACTCTGCACACTGGAGCAGCTCACTTCTTCTCGATTCCTTCTCACACTCTACAATGGTGAAGACTTACGTAAGAGAGAATGTGCCTCTCTCTCGTTTTGGTGTCTTGGTAGCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAACAGCCTCCGGAGCCCCTTCTCTGCTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCCAAGTCAGTTTTATTGTTATATGTTTCTGCTCTTTTCATCATCGTTTCCGTCTTGCATTGTCTACGGCAGTATACGACTGGGGAGAATAAAGGAGACCGTCACATAAAAGCAGAGCACAAAGGCCTCCATAGATATTTAAAGAAGAAAATACAGTCGCATGTCTTGCTTACAATGGATAGCAAATAA

Coding sequence (CDS)

ATGGTGAAGACTTACGTAAGAGAGAATGTGCCTCTCTCTCGTTTTGGTGTCTTGGTAGCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAACAGCCTCCGGAGCCCCTTCTCTGCTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCCAAGTCAGTTTTATTGTTATATGTTTCTGCTCTTTTCATCATCGTTTCCGTCTTGCATTGTCTACGGCAGTATACGACTGGGGAGAATAAAGGAGACCGTCACATAAAAGCAGAGCACAAAGGCCTCCATAGATATTTAAAGAAGAAAATACAGTCGCATGTCTTGCTTACAATGGATAGCAAATAA

Protein sequence

MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLLYVSALFIIVSVLHCLRQYTTGENKGDRHIKAEHKGLHRYLKKKIQSHVLLTMDSK

Homology

[Close]

BLAST of Lsi03G002380 vs. TrEMBL
Match: A0A0A0KUL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644560 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 65/92 (70.65%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK     
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK----- 60

Query: 61 YVSALFIIVSVLHCLRQYTTGENKGDRHIKAE 93
                          Q TTGEN+GD H +A+
Sbjct: 61 ----------------QRTTGENEGDSHREAQ 71

[Close]

BLAST of Lsi03G002380 vs. TrEMBL
Match: A0A059BSH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+  +LL
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

[Close]

BLAST of Lsi03G002380 vs. TrEMBL
Match: A0A059BS29_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+  +LL
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

[Close]

BLAST of Lsi03G002380 vs. TrEMBL
Match: A0A059BRM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+  +LL
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

[Close]

BLAST of Lsi03G002380 vs. TrEMBL
Match: A0A059BTD9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+  +LL
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

[Close]

BLAST of Lsi03G002380 vs. TAIR10
Match: AT1G67140.3 (AT1G67140.3 HEAT repeat-containing protein)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-18
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          M K    +NVPLSRFGVLVAQLESIVASA+Q+ P+PLLCF++LSDLISAIDEEPK  LL+
Sbjct: 1  MTKNIASDNVPLSRFGVLVAQLESIVASASQKNPDPLLCFEILSDLISAIDEEPKESLLV 60

[Close]

BLAST of Lsi03G002380 vs. NCBI nr
Match: gi|700197402|gb|KGN52579.1| (hypothetical protein Csa_5G644560 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23
Identity = 65/92 (70.65%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK     
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK----- 60

Query: 61 YVSALFIIVSVLHCLRQYTTGENKGDRHIKAE 93
                          Q TTGEN+GD H +A+
Sbjct: 61 ----------------QRTTGENEGDSHREAQ 71

[Close]

BLAST of Lsi03G002380 vs. NCBI nr
Match: gi|778707626|ref|XP_011656034.1| (PREDICTED: HEAT repeat-containing protein 5B [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK  +LL
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

[Close]

BLAST of Lsi03G002380 vs. NCBI nr
Match: gi|659119089|ref|XP_008459470.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X2 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK  +LL
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

[Close]

BLAST of Lsi03G002380 vs. NCBI nr
Match: gi|659119091|ref|XP_008459471.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X3 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK  +LL
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

[Close]

BLAST of Lsi03G002380 vs. NCBI nr
Match: gi|659119087|ref|XP_008459469.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X1 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLL 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK  +LL
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILL 60

Query: 61 Y 62
          +
Sbjct: 61 W 61

The following BLAST results are available for this feature:

BLAST of Lsi03G002380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G002380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUL5_CUCSA	1.1e-23	70.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644560 PE=4 SV=1	[more]
A0A059BSH7_EUCGR	5.6e-20	86.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]
A0A059BS29_EUCGR	5.6e-20	86.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]
A0A059BRM6_EUCGR	5.6e-20	86.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]
A0A059BTD9_EUCGR	5.6e-20	86.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]

BLAST of Lsi03G002380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67140.3	2.8e-18	75.00	HEAT repeat-containing protein	[more]

BLAST of Lsi03G002380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197402\|gb\|KGN52579.1\|	1.6e-23	70.65	hypothetical protein Csa_5G644560 [Cucumis sativus]	[more]
gi\|778707626\|ref\|XP_011656034.1\|	1.5e-21	93.44	PREDICTED: HEAT repeat-containing protein 5B [Cucumis sativus]	[more]
gi\|659119089\|ref\|XP_008459470.1\|	1.5e-21	93.44	PREDICTED: HEAT repeat-containing protein 5B isoform X2 [Cucumis melo]	[more]
gi\|659119091\|ref\|XP_008459471.1\|	1.5e-21	93.44	PREDICTED: HEAT repeat-containing protein 5B isoform X3 [Cucumis melo]	[more]
gi\|659119087\|ref\|XP_008459469.1\|	1.5e-21	93.44	PREDICTED: HEAT repeat-containing protein 5B isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002380.1	Lsi03G002380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21663	HYPOTHETICAL HEAT DOMAIN-CONTAINING	coord: 6..61 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G002380	Csa5G644560	Cucumber (Chinese Long) v2	culsiB353
Lsi03G002380	CSPI05G30080	Wild cucumber (PI 183967)	cpilsiB357
Lsi03G002380	Cucsa.238050	Cucumber (Gy14) v1	cgylsiB387
Lsi03G002380	Cla016449	Watermelon (97103) v1	lsiwmB278
Lsi03G002380	MELO3C022095	Melon (DHL92) v3.5.1	lsimeB233
Lsi03G002380	ClCG11G005420	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G002380	MELO3C022095.2	Melon (DHL92) v3.6.1	lsimedB243
Lsi03G002380	Bhi06G000093	Wax gourd	lsiwgoB310
Lsi03G002380	Cp4.1LG13g07800	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G002380	CsGy5G029460	Cucumber (Gy14) v2	cgyblsiB325
Lsi03G002380	Carg02175	Silver-seed gourd	carlsiB236
Lsi03G002380	CsaV3_5G039200	Cucumber (Chinese Long) v3	cuclsiB378

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G002380	Wax gourd	lsiwgoB322
Lsi03G002380	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G002380	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G002380	Cucurbita maxima (Rimu)	cmalsiB668
Lsi03G002380	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G002380	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G002380	Cucurbita moschata (Rifu)	cmolsiB657
Lsi03G002380	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G002380	Cucurbita pepo (Zucchini)	cpelsiB350
Lsi03G002380	Silver-seed gourd	carlsiB017
Lsi03G002380	Silver-seed gourd	carlsiB019
Lsi03G002380	Watermelon (97103) v2	lsiwmbB222