Lsi03G002380.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTAAATTTTACCTAAATAAGAAAAAAAAAAAAAGGTGAAAAGACAGAGCGATCGGCAAACGATCGACTAATCAACACTGGACTCTGATTCACCGGCTTCAATCGACATAGAATTGCCACTCTGCACACTGGAGCAGCTCACTTCTTCTCGATTCCTTCTCACACTCTACAATGGTGAAGACTTACGTAAGAGAGAATGTGCCTCTCTCTCGTTTTGGTGTCTTGGTAGCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAACAGCCTCCGGAGCCCCTTCTCTGCTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCCAAGGTTCACTCTTTTAATTTCGCTGCATTTTCATGTTTAGCTAATTAGCATCCATATTGTCTTCTTTCGAATATGTTCTATTGGTTTTAACTGCAACTTTTACATTAACAAGATGAGATATTTAATTTTGCCACATTATGCGGATCTCGATGAATTTGATATCGGATGTGGAATTATTATGCGCAGTCAGTTTTATTGTTATATGTTTCTGCTCTTTTCATCATCGTTTCCGTCTTGCATTGTCTACGGGTGGGAATATCTGTCTTCATTGAGTATTTGGTTATGAAGTTTTAATTTGCCTCCGTGCTAATGAAGGTTATAGAGCTCCCATCATGTAATTGTAATTCAGCAGTATACGACTGGGGAGAATAAAGGAGACCGTCACATAAAAGCAGAGCACAAAGGCCTCCATAGATATTTAAAGAAGAAAATACAGTCGCATGTCTTGCTTACAATGGATAGCAAATAA GTAAATTTTACCTAAATAAGAAAAAAAAAAAAAGGTGAAAAGACAGAGCGATCGGCAAACGATCGACTAATCAACACTGGACTCTGATTCACCGGCTTCAATCGACATAGAATTGCCACTCTGCACACTGGAGCAGCTCACTTCTTCTCGATTCCTTCTCACACTCTACAATGGTGAAGACTTACGTAAGAGAGAATGTGCCTCTCTCTCGTTTTGGTGTCTTGGTAGCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAACAGCCTCCGGAGCCCCTTCTCTGCTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCCAAGTCAGTTTTATTGTTATATGTTTCTGCTCTTTTCATCATCGTTTCCGTCTTGCATTGTCTACGGCAGTATACGACTGGGGAGAATAAAGGAGACCGTCACATAAAAGCAGAGCACAAAGGCCTCCATAGATATTTAAAGAAGAAAATACAGTCGCATGTCTTGCTTACAATGGATAGCAAATAA ATGGTGAAGACTTACGTAAGAGAGAATGTGCCTCTCTCTCGTTTTGGTGTCTTGGTAGCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAACAGCCTCCGGAGCCCCTTCTCTGCTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCCAAGTCAGTTTTATTGTTATATGTTTCTGCTCTTTTCATCATCGTTTCCGTCTTGCATTGTCTACGGCAGTATACGACTGGGGAGAATAAAGGAGACCGTCACATAAAAGCAGAGCACAAAGGCCTCCATAGATATTTAAAGAAGAAAATACAGTCGCATGTCTTGCTTACAATGGATAGCAAATAA MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKSVLLLYVSALFIIVSVLHCLRQYTTGENKGDRHIKAEHKGLHRYLKKKIQSHVLLTMDSK
BLAST of Lsi03G002380.1 vs. TrEMBL
Match: A0A0A0KUL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644560 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23 Identity = 65/92 (70.65%), Postives = 68/92 (73.91%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. TrEMBL
Match: A0A059BSH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. TrEMBL
Match: A0A059BS29_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. TrEMBL
Match: A0A059BRM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. TrEMBL
Match: A0A059BTD9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. TAIR10
Match: AT1G67140.3 (AT1G67140.3 HEAT repeat-containing protein) HSP 1 Score: 88.6 bits (218), Expect = 2.8e-18 Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. NCBI nr
Match: gi|700197402|gb|KGN52579.1| (hypothetical protein Csa_5G644560 [Cucumis sativus]) HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23 Identity = 65/92 (70.65%), Postives = 68/92 (73.91%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. NCBI nr
Match: gi|778707626|ref|XP_011656034.1| (PREDICTED: HEAT repeat-containing protein 5B [Cucumis sativus]) HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21 Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. NCBI nr
Match: gi|659119089|ref|XP_008459470.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X2 [Cucumis melo]) HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21 Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. NCBI nr
Match: gi|659119091|ref|XP_008459471.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X3 [Cucumis melo]) HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21 Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1
BLAST of Lsi03G002380.1 vs. NCBI nr
Match: gi|659119087|ref|XP_008459469.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X1 [Cucumis melo]) HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21 Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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