Cucsa.238050 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.238050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	HEAT repeat-containing protein
Location	scaffold02023 : 735079 .. 735691 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGACTTACGTGAGAGAGAATGTGCCTCTCTCTCGTTTCGGTGTATTGGTAGCTCAGCTGGAATCCATAGTTGCCTCCGCTGCTCAACAACCTCCGGAGCCCCTTCTATGCTTCGATCTTCTTTCCGATCTCATTTCCGCCATCGACGAAGAACCCAAGGTTCACCCTTTTAATTTCGCTGCATTTTCATTTTTGTTCAATTAGCATCCATCGAATATGTTCTATTGGTTTTTTACTGCCAACTTTTACATTAAGAAGATAAAGTATTGAATTATGTGATATTATGCGGATCTTTATGAGTTGGTATCGGAAATGGAATTATTATGGGCAGTCAGTTTTATTTTGATTAAAACTGCTATTTTCATTATCGTTTCCATCTTGCATTGTCCACGGGTGGGAATATCTGTCTTCATTGGGTATCTGGCTATGAAGTTTAATTTTCCTCCGTGCAAACGAAGGTTATAGAGTTCCCCATTATGTAATTGTTATTCAGCAGCGTACTACTGGTGAGAATGAAGGAGACAGTCACAGAGAAGCACAGAGCACAGACACCTCCATGGATATCAATAACAGAAAAGGGTACAAAGATAAAAGATACATTGAGTAG

mRNA sequence

ATGGTGAAGACTTACGTGAGAGAGAATGTGCCTCTCTCTCGTTTCGGTGTATTGGTAGCTCAGCTGGAATCCATAGTTGCCTCCGCTGCTCAACAACCTCCGGAGCCCCTTCTATGCTTCGATCTTCTTTCCGATCTCATTTCCGCCATCGACGAAGAACCCAAGCGTACTACTGGTGAGAATGAAGGAGACAGTCACAGAGAAGCACAGAGCACAGACACCTCCATGGATATCAATAACAGAAAAGGGTACAAAGATAAAAGATACATTGAGTAG

Coding sequence (CDS)

ATGGTGAAGACTTACGTGAGAGAGAATGTGCCTCTCTCTCGTTTCGGTGTATTGGTAGCTCAGCTGGAATCCATAGTTGCCTCCGCTGCTCAACAACCTCCGGAGCCCCTTCTATGCTTCGATCTTCTTTCCGATCTCATTTCCGCCATCGACGAAGAACCCAAGCGTACTACTGGTGAGAATGAAGGAGACAGTCACAGAGAAGCACAGAGCACAGACACCTCCATGGATATCAATAACAGAAAAGGGTACAAAGATAAAAGATACATTGAGTAG

Protein sequence

MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRTTGENEGDSHREAQSTDTSMDINNRKGYKDKRYIE*

Homology

[Close]

BLAST of Cucsa.238050 vs. TrEMBL
Match: A0A0A0KUL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644560 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.5e-42
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK-RTTG 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK RTTG
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKQRTTG 60

Query: 61 ENEGDSHREAQSTDTSMDINNRKGYKDKRYIE 92
          ENEGDSHREAQSTDTSMDINNRKGYKDKRYIE
Sbjct: 61 ENEGDSHREAQSTDTSMDINNRKGYKDKRYIE 92

[Close]

BLAST of Cucsa.238050 vs. TrEMBL
Match: A0A059BS29_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+ +
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQES 57

[Close]

BLAST of Cucsa.238050 vs. TrEMBL
Match: A0A059BTD9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+ +
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQES 57

[Close]

BLAST of Cucsa.238050 vs. TrEMBL
Match: A0A059BRM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+ +
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQES 57

[Close]

BLAST of Cucsa.238050 vs. TrEMBL
Match: A0A059BSH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVK YVRENVPLSRFGVLVAQLESIVASA+QQPP+PLLCFDLLSDLISAIDEEP+ +
Sbjct: 1  MVKNYVRENVPLSRFGVLVAQLESIVASASQQPPDPLLCFDLLSDLISAIDEEPQES 57

[Close]

BLAST of Cucsa.238050 vs. TAIR10
Match: AT1G67140.3 (AT1G67140.3 HEAT repeat-containing protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-18
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          M K    +NVPLSRFGVLVAQLESIVASA+Q+ P+PLLCF++LSDLISAIDEEPK +
Sbjct: 1  MTKNIASDNVPLSRFGVLVAQLESIVASASQKNPDPLLCFEILSDLISAIDEEPKES 57

[Close]

BLAST of Cucsa.238050 vs. NCBI nr
Match: gi|700197402|gb|KGN52579.1| (hypothetical protein Csa_5G644560 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 7.8e-42
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK-RTTG 60
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK RTTG
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKQRTTG 60

Query: 61 ENEGDSHREAQSTDTSMDINNRKGYKDKRYIE 92
          ENEGDSHREAQSTDTSMDINNRKGYKDKRYIE
Sbjct: 61 ENEGDSHREAQSTDTSMDINNRKGYKDKRYIE 92

[Close]

BLAST of Cucsa.238050 vs. NCBI nr
Match: gi|778707626|ref|XP_011656034.1| (PREDICTED: HEAT repeat-containing protein 5B [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-21
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK +
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKES 57

[Close]

BLAST of Cucsa.238050 vs. NCBI nr
Match: gi|659119089|ref|XP_008459470.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X2 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-21
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK +
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKES 57

[Close]

BLAST of Cucsa.238050 vs. NCBI nr
Match: gi|659119091|ref|XP_008459471.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X3 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-21
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK +
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKES 57

[Close]

BLAST of Cucsa.238050 vs. NCBI nr
Match: gi|659119087|ref|XP_008459469.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X1 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-21
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKRT 58
          MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK +
Sbjct: 1  MVKTYVRENVPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKES 57

The following BLAST results are available for this feature:

BLAST of Cucsa.238050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUL5_CUCSA	5.5e-42	98.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644560 PE=4 SV=1	[more]
A0A059BS29_EUCGR	1.3e-19	89.47	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]
A0A059BTD9_EUCGR	1.3e-19	89.47	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]
A0A059BRM6_EUCGR	1.3e-19	89.47	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]
A0A059BSH7_EUCGR	1.3e-19	89.47	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02484 PE=4 SV=1	[more]

BLAST of Cucsa.238050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67140.3	2.9e-18	75.44	HEAT repeat-containing protein	[more]

BLAST of Cucsa.238050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197402\|gb\|KGN52579.1\|	7.8e-42	98.91	hypothetical protein Csa_5G644560 [Cucumis sativus]	[more]
gi\|778707626\|ref\|XP_011656034.1\|	3.4e-21	96.49	PREDICTED: HEAT repeat-containing protein 5B [Cucumis sativus]	[more]
gi\|659119089\|ref\|XP_008459470.1\|	3.4e-21	96.49	PREDICTED: HEAT repeat-containing protein 5B isoform X2 [Cucumis melo]	[more]
gi\|659119091\|ref\|XP_008459471.1\|	3.4e-21	96.49	PREDICTED: HEAT repeat-containing protein 5B isoform X3 [Cucumis melo]	[more]
gi\|659119087\|ref\|XP_008459469.1\|	3.4e-21	96.49	PREDICTED: HEAT repeat-containing protein 5B isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.238050.1	Cucsa.238050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21663	HYPOTHETICAL HEAT DOMAIN-CONTAINING	coord: 6..55 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.238050	Cla016449	Watermelon (97103) v1	cgywmB447
Cucsa.238050	Csa5G644560	Cucumber (Chinese Long) v2	cgycuB337
Cucsa.238050	MELO3C022095	Melon (DHL92) v3.5.1	cgymeB401
Cucsa.238050	ClCG11G005420	Watermelon (Charleston Gray)	cgywcgB416
Cucsa.238050	CSPI05G30080	Wild cucumber (PI 183967)	cgycpiB353
Cucsa.238050	Lsi03G002380	Bottle gourd (USVL1VR-Ls)	cgylsiB387

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.238050	Silver-seed gourd	carcgyB0023
Cucsa.238050	Silver-seed gourd	carcgyB0024
Cucsa.238050	Silver-seed gourd	carcgyB0316
Cucsa.238050	Cucumber (Chinese Long) v3	cgycucB357
Cucsa.238050	Watermelon (97103) v2	cgywmbB418
Cucsa.238050	Wax gourd	cgywgoB471
Cucsa.238050	Cucurbita maxima (Rimu)	cgycmaB0660
Cucsa.238050	Cucurbita maxima (Rimu)	cgycmaB0662
Cucsa.238050	Cucurbita maxima (Rimu)	cgycmaB0663
Cucsa.238050	Cucurbita moschata (Rifu)	cgycmoB0660
Cucsa.238050	Cucurbita moschata (Rifu)	cgycmoB0662
Cucsa.238050	Melon (DHL92) v3.5.1	cgymeB402
Cucsa.238050	Cucurbita pepo (Zucchini)	cgycpeB0626
Cucsa.238050	Cucurbita pepo (Zucchini)	cgycpeB0627
Cucsa.238050	Melon (DHL92) v3.6.1	cgymedB399