Lsi03G001770 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G001770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	SPIRAL1-like1
Location	chr03 : 2341191 .. 2344688 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAAGGCGTTCTGCTGGCTTCTTACATTTTGCTCCTTATCTCTTCCTTTTGATCCCATTTTCATTCCGAGAAGATTTCTGAGGTACCCATTTCAATTCTCCACTTTCCCATTTCAGATCCACATTTCGTTAGGGCTTTTTCACCGTTCTAATATTTGTTTGTGTTGTTTTAGTTTACCAATTTGATTTATTTTCTACAATCTTTAATGAAAATGGTGAGATTTGATGAGGTTGAAATGCCATGCGATCCTTGTTTTACTTGGTATTGAATGGATTGAAATGTTGAAATGCTTGTTGCCTGTGAGAGCTTAAAATTATAGCACACTTGTGGGTAATGGACTTGGAAGAAGAAGACTGGGAATATTTGAAGCATGATACGAATAATGCATGGAAATGAATGTTGTCGGAGTATTGATATAATCAAATTTACCTTAACGTTACACTTTTGAGGTGATTGGTGATTTAAGATAGTATGGTACCAGGGTAGAGGTACTTTGTTCGAACATTTTAACTCTTCTTCCCTCCGATTAATATTATTTTCAAGCAGACAAGTAAGAGTGTGTTAAAGTATTGATTTACTCAAATTTACTATAACTCATTGGTTTAAGGTTTTGGGTTGAACGGTGTTTTAATAGAATTTATACTGTGTGGCTTTCAATTTGCCAAGTCTTATAGTATAGGTATAAGTTTATGGAAAATATGCAATAGATTTTGTATTCATAACTTGTTCTTATATCCAAATACTATTAACATTGTAGAGTCGGCTTGGTAGTTTTCAATATGATAGGTATTTTGAAGTAGTTTTTCTTGATACATATTCAGACCATTTTGGTCATTTATAAACAAGAATGATAATGTTCACCAATAAGGCATGCAGAATTGTGGCAACAATTACAGCAATAATACATCAATGATATCTACTATTTAAGGCATGAAATAAGCACAAATTAAAGCAATAATTGATGGGTGTGATTTGGTGTGATTTTCCTCTAATACAATAGAGGCATATTACATATATTGAATTTGCTTGATAGTCTTTATGAAGTGTCTTTGGATTATATGTGCTTAAACATGTATGCATTATCTATATACTATTGCTGTATAGGCCAAATGTATCATATTGCACTTTTTTCTTATGATTTGGTTTCTCTCTGACTTTTCTGGATGTTCTTACCTTTCTGGCATTGCTCCCTGTTGTTTCTTTTGATATATTCTAATAGTTAAACCTGTGATCACTATAATTACAACTGGGTTTTATGTTGTTGTATTACTTGGAGAAACAAAAGGCTTGACAATGAAGCGTGGAGTTAGCAGCGGTGGTGGACAGAGTTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAATGTGCAAGCTTCGCAGAAATCCAATGGATCTTCTCAGCTGGTCTCTTCTACTTTGCAACCGACCGATAAACAGACAGCTGCTGGCGTTCCAGGGCATCTTACTAACAATTACTATCGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGTTAGGCCCCTTGTTTCACTTGTGTTGGCTTGAAATGTTTGGTGCTGATAGTTATTCACAAGTATTCTGACCTTCCACTATCATATATATAACATCATAACTCATCAGAAGTCATCAAGTTGCAATGCTTGGAGAGGTGGAGAAATCAATCTTCCTCCCTTGACATGGGTTTTTACCCTACTAATTCGTTAACTTTCATAAAAGTAACATTTTAGTCTCTGAACTTTAGTCGGTAAAAAAAGAATTAGTCCTATACTTTCAAATTTGTAACAATTTAGCCCCTGAACTTCAATAAATAACAATTTAGTCTTAGTACTTTATAATTTGTAATGATTTAATTCCTATCATGAAAAGATTTGTAGGTTTTAATAAAAAAGAATTTATTCATGTAGATCAATAAACTAATCCGAGATCAATTTTTTTTATAAACTATAAATAGTAAGTTATTACAATTGACACTTAATTTTGATGAGATTTTTCATGGTAGGGACTAAATTGTTACAAATTTTAAAATATAGGGATTAAATTGTTACTTATTAAAGTTTAGAGACTAAATTGTTACAAATTTGAAAGTATAGGGACTAAATCGTTACTAAAATTAGTTTAGGACTAAATTGGTACTTAAATAAAAGTTTAAGGACTAAAAATGTTTAAGTTGGTGCACTCTGAAATATACATGGTAAGTGATGGGTCAAAAGTGAAGGCAGAGAGGAGATAACTGAGGTCGTACTTGAAGAGAAAAAGGGATGAAACAGTAGGCAGAGAAGAATTCTGGACCAAAAATTAAGGTAGGGAGGAAATTCTTGAAATAATAGGAAGATTGATATGTCTCAGTAAACCAAAGGGTGAAGAAGGCACCGTATCAGTTACATCTACAGGAGCTTCTCACCTGCCAATTTCTTACAACTTCTTCATTGTGGATATAACCAAAGAAAACACTCTGGTAACTATAGATGTGCTCAAGAACATTAGTTATTATATATGAATGAACTTAGATGTTGCAAAGTACTGTTGAGATCCTGAAAATACTACAGAAGCACATCCCTAATTCACAACTAATTTGGATGATACTACAAGAGGTTGTTTGGAGCGTTGAGTTGGTTATAATAGTCCGTGTTTGAGGTATTTTAGTCTGGGTTATAATAGTTTGTGTTTAGGGTGTAGATTATTATAGTCTGGAGATAAGATGGTTATAAAATAGTAAACACGGTAGACAATGAGAGTTTTTAAATAGTTTTTATGTAGCTAAATATGAGTTATAATAATTGAGAACTTCAACTATTACAATGGGAGGCCCAAACATTAAGTGGGCTATAATAGCTCACTCCACCCAAGGCAAGTTAGGGGCCATATGCTGCCTAGCTGTTTTGATATTAGATCTGATGAGAAAGATCCCATTTTCAATCTGAAGTTCTAAACATTGCTTTGTCTAAGTGTTCTGATTCTAAATCAATGGTTAATCCTGGCTTTATTTCAATACTGAATCCTCATTTATTTATAACCATTGGGATGTAAATGTTGGTTTATGTGCGAGCAGGATCGTCCATCAACCAAGGTTCACGCTGCACCTGGTGGCGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAAGTTGGTTAAGAACCAAGAAAGACCCTTCAATGGCACTGGCACCTATCGTATTATGTAAACTAGAAAATTGTATCTACCTTTGAAAAGCTTAGAGCTTTTGTCTTTCAAAATTGTGGTATTTTTTTTAATGCACAAGGTTGTTTCCTCATGGTCAGAATTGCTGAAATGCTTGGCTCTTGATGCTTTGTGTTGAAACAAAAATGAGTGATTATTGTATCTTGCTCTGCTCTCAATCTCTTGCATTTGCTGGCTACTGAACTTTTATGATGGGCTCATGCATCCTTTTAAGATTCAGTCCAAATGTATTTGTCTCTATTCAAATTTTAAATTTTAATTTCTGAAATTGCCATTGGGATA

mRNA sequence

TGGGAAGGCGTTCTGCTGGCTTCTTACATTTTGCTCCTTATCTCTTCCTTTTGATCCCATTTTCATTCCGAGAAGATTTCTGAGGTACCCATTTCAATTCTCCACTTTCCCATTTCAGATCCACATTTCGTTAGGGCTTTTTCACCGTTCTAATATTTGTTTGTGTTGTTTTAGTTTACCAATTTGATTTATTTTCTACAATCTTTAATGAAAATGGTGAGATTTGATGAGGTTGAAATGCCATGCGATCCTTGTTTTACTTGGTATTGAATGGATTGAAATGTTGAAATGCTTGTTGCCTGTGAGAGCTTAAAATTATAGCACACTTGTGGGTAATGGACTTGGAAGAAGAAGACTGGGAATATTTGAAGCATGATACGAATAATGCATGGAAATGAATGTTGTCGGAGTATTGATATAATCAAATTTACCTTAACGTTACACTTTTGAGGTGATTGGTGATTTAAGATAGTATGGTACCAGGGTAGAGGTACTTTGTTCGAACATTTTAACTCTTCTTCCCTCCGATTAATATTATTTTCAAGCAGACAAGTAAGAGTGTGTTAAAGTATTGATTTACTCAAATTTACTATAACTCATTGGTTTAAGGTTTTGGGTTGAACGGTGTTTTAATAGAATTTATACTGTGTGGCTTTCAATTTGCCAAGTCTTATAGTATAGGTATAAGTTTATGGAAAATATGCAATAGATTTTGTATTCATAACTTGTTCTTATATCCAAATACTATTAACATTGTAGAGTCGGCTTGGTAGTTTTCAATATGATAGGTATTTTGAAGTAGTTTTTCTTGATACATATTCAGACCATTTTGGTCATTTATAAACAAGAATGATAATGTTCACCAATAAGGCATGCAGAATTGTGGCAACAATTACAGCAATAATACATCAATGATATCTACTATTTAAGGCATGAAATAAGCACAAATTAAAGCAATAATTGATGGGTGTGATTTGGTGTGATTTTCCTCTAATACAATAGAGGCATATTACATATATTGAATTTGCTTGATAGTCTTTATGAAGTGTCTTTGGATTATATGTGCTTAAACATGTATGCATTATCTATATACTATTGCTGTATAGGCCAAATGTATCATATTGCACTTTTTTCTTATGATTTGGTTTCTCTCTGACTTTTCTGGATGTTCTTACCTTTCTGGCATTGCTCCCTGTTGTTTCTTTTGATATATTCTAATAGTTAAACCTGTGATCACTATAATTACAACTGGGTTTTATGTTGTTGTATTACTTGGAGAAACAAAAGGCTTGACAATGAAGCGTGGAGTTAGCAGCGGTGGTGGACAGAGTTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAATGTGCAAGCTTCGCAGAAATCCAATGGATCTTCTCAGCTGGTCTCTTCTACTTTGCAACCGACCGATAAACAGACAGCTGCTGGCGTTCCAGGGCATCTTACTAACAATTACTATCGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCAACCAAGGTTCACGCTGCACCTGGTGGCGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAAGTTGGTTAAGAACCAAGAAAGACCCTTCAATGGCACTGGCACCTATCGTATTATGTAAACTAGAAAATTGTATCTACCTTTGAAAAGCTTAGAGCTTTTGTCTTTCAAAATTGTGGTATTTTTTTTAATGCACAAGGTTGTTTCCTCATGGTCAGAATTGCTGAAATGCTTGGCTCTTGATGCTTTGTGTTGAAACAAAAATGAGTGATTATTGTATCTTGCTCTGCTCTCAATCTCTTGCATTTGCTGGCTACTGAACTTTTATGATGGGCTCATGCATCCTTTTAAGATTCAGTCCAAATGTATTTGTCTCTATTCAAATTTTAAATTTTAATTTCTGAAATTGCCATTGGGATA

Coding sequence (CDS)

ATGAAGCGTGGAGTTAGCAGCGGTGGTGGACAGAGTTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAATGTGCAAGCTTCGCAGAAATCCAATGGATCTTCTCAGCTGGTCTCTTCTACTTTGCAACCGACCGATAAACAGACAGCTGCTGGCGTTCCAGGGCATCTTACTAACAATTACTATCGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCAACCAAGGTTCACGCTGCACCTGGTGGCGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAA

Protein sequence

MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS

Homology

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BLAST of Lsi03G001770 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-24
Identity = 67/112 (59.82%), Postives = 76/112 (67.86%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGE---PA-NNVQASQK------SNGSSQLVSSTLQPTDKQ 60
           M RGVS GGGQSSLGYLFG+GE   PA NN  A         ++ S + V++      KQ
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQ 60

Query: 61  TAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
             AG+    TNNY RADGQN GNF+TDRPSTKVHAAPGGGSSLD+LFG G S
Sbjct: 61  IPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGGS 112

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BLAST of Lsi03G001770 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEP-----ANNVQASQKSNGSS---QLVSSTLQPTDKQTA 60
           M RGVS+GGGQSSLGYLFG+GE       N   A  +S+  +   Q  ++    + KQ  
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  AGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
           AG+  +  NNY RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGG 108

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BLAST of Lsi03G001770 vs. Swiss-Prot
Match: SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-22
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVSSGGGQSSLGYLFG GE     ++++K     +   S+     K+  AG+     
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEAP---KSAEKPAPVQKPAPSSSAEKLKEIPAGIQSSKA 60

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGR 102
           NNY RA+GQNCGNF+TDRPSTKV AAPGGGSSLD+LF   +
Sbjct: 61  NNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSGNK 98

[Close]

BLAST of Lsi03G001770 vs. Swiss-Prot
Match: SP1L2_ORYSJ (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-22
Identity = 59/109 (54.13%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQL---------VSSTLQPTD----K 62
           RGVSSGGGQSSLGYLFG GE A   +A   +    +          V++   P+     K
Sbjct: 5   RGVSSGGGQSSLGYLFGGGETAPAAKAKPAAAAEKETTPAPVKKAAVAAAASPSAAEKMK 64

Query: 63  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           +  AG+     NNY+RA GQNCGNF+TDRPSTKVHAAPGGGSSL +LFG
Sbjct: 65  EIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFG 113

[Close]

BLAST of Lsi03G001770 vs. Swiss-Prot
Match: SP1L3_ARATH (Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-22
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 1


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQKSN------------GSSQLVSSTLQPTD-K 62
           RGV++G  +SSLGYLFG+G+P++   A+  +             G   + ++T   TD K
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64

Query: 63  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           +T+AGV G   NNY+R++GQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG
Sbjct: 65  KTSAGVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112

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BLAST of Lsi03G001770 vs. TrEMBL
Match: B9IK91_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13090g PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-31
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLV-----SSTLQPTDKQTAAGV 60
           M RGVS+GGGQSSLGYLFGNGEPANN   ++    S+ +      +S   P DKQT AG+
Sbjct: 1   MGRGVSAGGGQSSLGYLFGNGEPANNSPVAKNVGNSASISPSPKPASASPPIDKQTPAGI 60

Query: 61  PGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
            G+LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 61  HGNLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 105

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BLAST of Lsi03G001770 vs. TrEMBL
Match: A0A067JWW4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19962 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.8e-31
Identity = 72/98 (73.47%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
          M RGVS+GGGQSSLGYLFGNGE ANN +A++  +    +V S  QP DKQ  AG+ G+LT
Sbjct: 1  MGRGVSAGGGQSSLGYLFGNGESANNDKAAKSPSSQKPIVGS--QPIDKQIPAGIHGNLT 60

Query: 61 NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
          NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 61 NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 96

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BLAST of Lsi03G001770 vs. TrEMBL
Match: A0A061EFP9_THECC (Methyl esterase 11 OS=Theobroma cacao GN=TCM_018817 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.5e-28
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQK-----SNGSSQLVSSTLQPTDKQTAAGV 60
           M RGVS+GGGQSSLGYLFG GE  +N Q +        N   Q  +S+  P DKQ  AG+
Sbjct: 365 MGRGVSAGGGQSSLGYLFGAGESGSNAQGTPNRGQAAENEPYQKPASSSPPIDKQIPAGI 424

Query: 61  PGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
            G+LTNNY+RADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 425 HGNLTNNYFRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 469

[Close]

BLAST of Lsi03G001770 vs. TrEMBL
Match: B9T5M1_RICCO (SP1L, putative OS=Ricinus communis GN=RCOM_0048980 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.5e-28
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNV-------QASQKSNGSSQLVSSTLQPTDKQTAA 60
           M RGVS+GGGQSSLGYLFGNGE ANN        QA+  S     +V+S   P +K+  A
Sbjct: 1   MGRGVSAGGGQSSLGYLFGNGETANNSPAAKSVGQAANNSPSPKPVVASP--PINKEIPA 60

Query: 61  GVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           G+ G+LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 61  GIHGNLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 103

[Close]

BLAST of Lsi03G001770 vs. TrEMBL
Match: E0CVG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00560 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 73/111 (65.77%), Postives = 82/111 (73.87%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGE---PANN------VQASQKSNGSSQLVSSTLQPTD--K 60
           M RGVSSGGGQSSLGYLFG+GE   PA+N       +A   +NG S   ++  QP D  K
Sbjct: 1   MGRGVSSGGGQSSLGYLFGSGEAPKPASNNAPVPPSEAPAVNNGPSPKPTAPAQPVDVTK 60

Query: 61  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
           Q  AG+ G+L NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 61  QIPAGIHGNLANNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 111

[Close]

BLAST of Lsi03G001770 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-25
Identity = 67/112 (59.82%), Postives = 76/112 (67.86%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGE---PA-NNVQASQK------SNGSSQLVSSTLQPTDKQ 60
           M RGVS GGGQSSLGYLFG+GE   PA NN  A         ++ S + V++      KQ
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQ 60

Query: 61  TAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 103
             AG+    TNNY RADGQN GNF+TDRPSTKVHAAPGGGSSLD+LFG G S
Sbjct: 61  IPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGGS 112

[Close]

BLAST of Lsi03G001770 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2)

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-24
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEP-----ANNVQASQKSNGSS---QLVSSTLQPTDKQTA 60
           M RGVS+GGGQSSLGYLFG+GE       N   A  +S+  +   Q  ++    + KQ  
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  AGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
           AG+  +  NNY RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGG 108

[Close]

BLAST of Lsi03G001770 vs. TAIR10
Match: AT3G02180.1 (AT3G02180.1 SPIRAL1-like3)

HSP 1 Score: 104.8 bits (260), Expect = 3.3e-23
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 1


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQKSN------------GSSQLVSSTLQPTD-K 62
           RGV++G  +SSLGYLFG+G+P++   A+  +             G   + ++T   TD K
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64

Query: 63  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           +T+AGV G   NNY+R++GQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG
Sbjct: 65  KTSAGVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112

[Close]

BLAST of Lsi03G001770 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4)

HSP 1 Score: 103.6 bits (257), Expect = 7.3e-23
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 1


Query: 3   RGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT-- 62
           RGV+SGGG+SSLGYLFG+GE   +V    K N  +   ++T   T    A G P   T  
Sbjct: 5   RGVNSGGGESSLGYLFGSGE---SVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTT 64

Query: 63  --------------------NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
                               NNYYR+DGQNCGNF+T+RPSTKVHAAPGGGSSL +LFG+G
Sbjct: 65  TTTGDKNKTEENSAGVRGSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFGSG 121

[Close]

BLAST of Lsi03G001770 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1)

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-19
Identity = 58/120 (48.33%), Postives = 74/120 (61.67%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNV------QASQKSNGSSQLVSS-----------T 60
           M RG S GGGQSSL YLFG   PA           ++ +NG +  V++           +
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60

Query: 61  LQPTD--KQTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGR 102
           ++P +  KQ  AG+   + NNY RA+GQN GNF+TDRPSTKVHAAPGGGSSLD+LF  G+
Sbjct: 61  VEPAELNKQIPAGIKTPV-NNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTGGK 119

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: gi|224141087|ref|XP_002323906.1| (hypothetical protein POPTR_0017s13090g [Populus trichocarpa])

HSP 1 Score: 142.5 bits (358), Expect = 4.0e-31
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLV-----SSTLQPTDKQTAAGV 60
           M RGVS+GGGQSSLGYLFGNGEPANN   ++    S+ +      +S   P DKQT AG+
Sbjct: 1   MGRGVSAGGGQSSLGYLFGNGEPANNSPVAKNVGNSASISPSPKPASASPPIDKQTPAGI 60

Query: 61  PGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
            G+LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 61  HGNLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 105

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: gi|643714908|gb|KDP27263.1| (hypothetical protein JCGZ_19962 [Jatropha curcas])

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-31
Identity = 72/98 (73.47%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
          M RGVS+GGGQSSLGYLFGNGE ANN +A++  +    +V S  QP DKQ  AG+ G+LT
Sbjct: 1  MGRGVSAGGGQSSLGYLFGNGESANNDKAAKSPSSQKPIVGS--QPIDKQIPAGIHGNLT 60

Query: 61 NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
          NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 61 NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 96

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: gi|802715966|ref|XP_012084838.1| (PREDICTED: putative methylesterase 11, chloroplastic [Jatropha curcas])

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-31
Identity = 72/98 (73.47%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQKSNGSSQLVSSTLQPTDKQTAAGVPGHLT 60
           M RGVS+GGGQSSLGYLFGNGE ANN +A++  +    +V S  QP DKQ  AG+ G+LT
Sbjct: 361 MGRGVSAGGGQSSLGYLFGNGESANNDKAAKSPSSQKPIVGS--QPIDKQIPAGIHGNLT 420

Query: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 421 NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 456

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: gi|590651007|ref|XP_007032785.1| (Methyl esterase 11 [Theobroma cacao])

HSP 1 Score: 131.3 bits (329), Expect = 9.3e-28
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNVQASQK-----SNGSSQLVSSTLQPTDKQTAAGV 60
           M RGVS+GGGQSSLGYLFG GE  +N Q +        N   Q  +S+  P DKQ  AG+
Sbjct: 365 MGRGVSAGGGQSSLGYLFGAGESGSNAQGTPNRGQAAENEPYQKPASSSPPIDKQIPAGI 424

Query: 61  PGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 101
            G+LTNNY+RADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 425 HGNLTNNYFRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 469

[Close]

BLAST of Lsi03G001770 vs. NCBI nr
Match: gi|255585716|ref|XP_002533540.1| (PREDICTED: protein SPIRAL1-like 1 [Ricinus communis])

HSP 1 Score: 131.3 bits (329), Expect = 9.3e-28
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 1   MKRGVSSGGGQSSLGYLFGNGEPANNV-------QASQKSNGSSQLVSSTLQPTDKQTAA 60
           M RGVS+GGGQSSLGYLFGNGE ANN        QA+  S     +V+S   P +K+  A
Sbjct: 1   MGRGVSAGGGQSSLGYLFGNGETANNSPAAKSVGQAANNSPSPKPVVASP--PINKEIPA 60

Query: 61  GVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           G+ G+LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 61  GIHGNLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 103

The following BLAST results are available for this feature:

BLAST of Lsi03G001770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SP1L1_ARATH	8.2e-24	59.82	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1	[more]
SP1L2_ARATH	3.1e-23	56.48	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1	[more]
SP1L3_ORYSJ	4.5e-22	56.44	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1	[more]
SP1L2_ORYSJ	4.5e-22	54.13	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1	[more]
SP1L3_ARATH	5.9e-22	53.21	Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=1 SV=1	[more]

BLAST of Lsi03G001770 vs. TrEMBL


Match Name	E-value	Identity	Description
B9IK91_POPTR	2.8e-31	69.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13090g PE=4 SV=1	[more]
A0A067JWW4_JATCU	4.8e-31	73.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19962 PE=4 SV=1	[more]
A0A061EFP9_THECC	6.5e-28	65.71	Methyl esterase 11 OS=Theobroma cacao GN=TCM_018817 PE=4 SV=1	[more]
B9T5M1_RICCO	6.5e-28	67.62	SP1L, putative OS=Ricinus communis GN=RCOM_0048980 PE=4 SV=1	[more]
E0CVG3_VITVI	1.9e-27	65.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00560 PE=4 SV=...	[more]

BLAST of Lsi03G001770 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	4.6e-25	59.82	SPIRAL1-like1	[more]
AT1G69230.1	1.7e-24	56.48	SPIRAL1-like2	[more]
AT3G02180.1	3.3e-23	53.21	SPIRAL1-like3	[more]
AT5G15600.1	7.3e-23	50.00	SPIRAL1-like4	[more]
AT2G03680.1	4.9e-19	48.33	spiral1	[more]

BLAST of Lsi03G001770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|224141087\|ref\|XP_002323906.1\|	4.0e-31	69.52	hypothetical protein POPTR_0017s13090g [Populus trichocarpa]	[more]
gi\|643714908\|gb\|KDP27263.1\|	6.9e-31	73.47	hypothetical protein JCGZ_19962 [Jatropha curcas]	[more]
gi\|802715966\|ref\|XP_012084838.1\|	6.9e-31	73.47	PREDICTED: putative methylesterase 11, chloroplastic [Jatropha curcas]	[more]
gi\|590651007\|ref\|XP_007032785.1\|	9.3e-28	65.71	Methyl esterase 11 [Theobroma cacao]	[more]
gi\|255585716\|ref\|XP_002533540.1\|	9.3e-28	67.62	PREDICTED: protein SPIRAL1-like 1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001770.1	Lsi03G001770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 1..98 score: 8.9
None	No IPR available	PANTHER	PTHR33403:SF4	SUBFAMILY NOT NAMED	coord: 1..98 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G001770	CmaCh04G028050	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G001770	Cla016514	Watermelon (97103) v1	lsiwmB278
Lsi03G001770	ClCG11G004840	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G001770	Cla97C11G211640	Watermelon (97103) v2	lsiwmbB222
Lsi03G001770	Bhi06G000273	Wax gourd	lsiwgoB312
Lsi03G001770	Cp4.1LG01g22550	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G001770	Carg05887	Silver-seed gourd	carlsiB017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G001770	Cucumber (Gy14) v1	cgylsiB254
Lsi03G001770	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G001770	Cucurbita moschata (Rifu)	cmolsiB263
Lsi03G001770	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G001770	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G001770	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G001770	Cucurbita pepo (Zucchini)	cpelsiB146
Lsi03G001770	Wild cucumber (PI 183967)	cpilsiB357
Lsi03G001770	Wild cucumber (PI 183967)	cpilsiB362
Lsi03G001770	Cucumber (Chinese Long) v2	culsiB353
Lsi03G001770	Cucumber (Chinese Long) v2	culsiB359
Lsi03G001770	Melon (DHL92) v3.5.1	lsimeB232
Lsi03G001770	Melon (DHL92) v3.5.1	lsimeB233
Lsi03G001770	Melon (DHL92) v3.5.1	lsimeB238
Lsi03G001770	Watermelon (Charleston Gray)	lsiwcgB245
Lsi03G001770	Cucumber (Gy14) v2	cgyblsiB325
Lsi03G001770	Melon (DHL92) v3.6.1	lsimedB243
Lsi03G001770	Melon (DHL92) v3.6.1	lsimedB249
Lsi03G001770	Silver-seed gourd	carlsiB235
Lsi03G001770	Silver-seed gourd	carlsiB236
Lsi03G001770	Cucumber (Chinese Long) v3	cuclsiB378
Lsi03G001770	Cucumber (Chinese Long) v3	cuclsiB384
Lsi03G001770	Watermelon (97103) v2	lsiwmbB238