ClCG11G004840 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G004840
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	SPIRAL1-like3 LENGTH=122
Location	CG_Chr11 : 5172932 .. 5175881 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTGCTGGGAAGGCGATCTGCTGGCTTCCTACATTTTGCTCCTTATCTCTTCCTCTTGATCCCATTTTCATTCCGAGAAGATTTCCGAGGTACCCATTTCAAATCTCCACTTTCCCATTTCAGATTCACGTTTCTTTAGGGTTTTTTCACCCTTCTAATATTTTGCTTGTGTTGTTTTTGTTTACCAATTTGATTTCTTTTCTATAATCTTTAATGAAAATGGTGAGATTTAATGAGGTTGAAATGCCATGCGATCCTTGTTTTACTTGGGGTATCAAATGGATTGAAATGTTGAAATGCTTGTTGCTGGATGCTGTGAGAGCTTAAAATTATAGCACACTTGTGGGTAATGGACTTGGAAGAAGAAGACTGGGAATATTTGAAGCATGATACGAATAATGCATAGAAATGAATGTTGTTGAAGTATTGATATAATCAAATTTACGTAACCTTACACTTTTGGGGTGATTGGTGATTTAACATATAATCAAATTTACTAATTTGGGGGTTATTTTGTTTGAACATTTTAATGTCATTTTCTCTCCGACTAATATTATTTTCTTGTAATGTTATTTTCAAGCACACAAGTAAGGGTGTATTAAGTATTAATTTACGCAAATTTACTGAGCAGAGCATGTTTGGGAGTGATTCATTTTGATGATATGAAAATCGCACTTAGAAGTATAAAATTAATTTTGAATGATTAAAAGCGTGTTTTGGGGTGATTAGGAACATGACAAAAGTGATATTAATCATTTCAGATTCACTCCTAAACATGCATGTATAACTCATTGGCTCAAGGTTTTGGGTTGATTGGTGTTTTAATAGAATTCGTACTGTGTGGTTTCCAATTTGCGAAGTGTTATGGTAAATAGTGTATGTATAAGTTAATGGAAAATATGCAATTCTTGTATCCATTGAAATAGTATTAACATTGTAGAGTCGGCTTGGTAGTCTTCAACAGAGGCCTATTGTTTTAGAATGTGCTTGATAGTCTTTAAGAAGTGTCTTTGGATCATATGTGCTTAAACTATATACTGTTGCTGCTGTATAAGCCAAATGTATCATATTGCACTATTTTCTTATGATTTGGTTTCTCTCTGACTTTTCTGGATGTTCTTACCTCTCTGGCATTGCTCCCTGTTGTTTTTTCCTGATATATTCTAATAGTTAAACGTGTGATCACTATAATTACAATTGGGTTTTATGTTGTATTACTTGGAGAAACAAAAGGCTTGAAAATGAGGCGTGGAGTTAGCAGTGGTGGTGGACAGAGCTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAGTGTGCAAGCTTCTCAGAAATCCAATGGATCTTCTGAGCCGGTCTCTTCTACTTCGCAATCGACCGGTAAACAGACAGCTGCTGGAGTTCCGGGGCATCTTACTAACAATTACTATAGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGTTAGGCTCCTTGTTTCACTAGTGTTGGCTTGAAATGTTTTGTGCTGTTGGTTAGTTATTCACAAGTATTCTGACCTTCCACTATCATATATATAACATCATAACTCATCAAAAGTCATCAAGTCGCAATGCTGGCAGAGGTGGAGAAATCAATCTTTCTCCTTTCACATGAGCTTTTACCCTACTAATTCTTTCGTTAACTTTCATAAAAGTAACATTTTAATCCCTGAATATTAGTTGGTAAAGACTTAGTCCTATACTTTCAAATTTGTAACAATTTAGATCCGGAACTTTAGTAAGTAACAATTAGTCCTTATACTTTATAATTTGTAATGATTTAGTTCCAATCATGAACAAGTTTGTAGGTTTTAATAGAAAAAAATTATCTTTTCTTATAAACTATAAATAATAAGTTATTATCTAACAAAAATTGACACTTAATTTGATGAGATTTTTCATGATAGGGTCTAAATTGTTACAATTTCAAAAAATAGGAATTAAATTATTACTTATTAAAGTTTAAGGATTAAATAAGTTCAAGGACCAAAAGTTTTTTAACAACAAAAAGTTGGTGTCCTCTTAAATGGGTCAAAAGTGAAGGCAGAGAGGAGATAATTGAGGCCATACTTGAAGAGAGAAAAGGGGTGAAACAGTAGGCAGAGAAGAATGGGACCAAAAATTAAGGTAGAGAGGAAATTCCTGAAATAATAGGGAAGAATGTAGTCTCATTACTCACCTGCCAATTTGTTAGAACTTTTCACCGTGGATATAACCAAAGAAAACATTCTGGTAACAATAGATGTGCTCAAGAACATTAGTTATTATTATAAATGTGAATGAACTTTGATGTTGCAAAGTACTGATGAGATACTCAAAACACTACAGAAGCACATCCCTATTTCATAACTAACTTGGATGAAATATATCCTACAAGTTTTCTTGACACTCAAATGTTGTAGAGTTAGGCGAGCCGTCTCATGAGATCAGTCGAGGTGCACGTAAGCTGGTTCGGACACTCACGGATATTAAAAAATAAAAACTTGGAAGACAGTTAACTGTTTTGATATTAGATCTGATGAGAAAGATCCCATTTTCAATCTGAAGTTTTGAACATTGCTTTGTCTAAGTATGTTGATCATGGCTTTTATTTATAACCATTGAAATGTAAATGTTGGTTTATGTGGGAGCAGGATCGTCCATCGACCAAGGTTCACGCCGCACCTGGTGGGGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAAGTTGGTTAAGAACCAAGTTAGACCCTTCTTTGGCACTGGCACCTATTATGTTATGTAAACTAAAACTACTTGTATATTTTTTTTATGCACAAGGTTGTTTCCTCATGGTCAGAATTGCTGAAATGCTTGGCTCTTGATGCTTTGTGTTGAAACAAAAGTGAGTTGTTGTTGTATCTTGCTTTGCTCTCAATCTCTTGCATTTGC

mRNA sequence

ATGGCTTGTGCTGGGAAGGCGATCTGCTGGCTTCCTACATTTTGCTCCTTATCTCTTCCTCTTGATCCCATTTTCATTCCGAGAAGATTTCCGAGTGGTGGTGGACAGAGCTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAGTGTGCAAGCTTCTCAGAAATCCAATGGATCTTCTGAGCCGGTCTCTTCTACTTCGCAATCGACCGGTAAACAGACAGCTGCTGGAGTTCCGGGGCATCTTACTAACAATTACTATAGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCGACCAAGGTTCACGCCGCACCTGGTGGGGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAAGTTGGTTAAGAACCAAGTTAGACCCTTCTTTGGCACTGGCACCTATTATGTTATGTAAACTAAAACTACTTGTATATTTTTTTTATGCACAAGGTTGTTTCCTCATGGTCAGAATTGCTGAAATGCTTGGCTCTTGATGCTTTGTGTTGAAACAAAAGTGAGTTGTTGTTGTATCTTGCTTTGCTCTCAATCTCTTGCATTTGC

Coding sequence (CDS)

ATGGCTTGTGCTGGGAAGGCGATCTGCTGGCTTCCTACATTTTGCTCCTTATCTCTTCCTCTTGATCCCATTTTCATTCCGAGAAGATTTCCGAGTGGTGGTGGACAGAGCTCCTTGGGCTACCTGTTTGGAAATGGAGAGCCAGCCAACAGTGTGCAAGCTTCTCAGAAATCCAATGGATCTTCTGAGCCGGTCTCTTCTACTTCGCAATCGACCGGTAAACAGACAGCTGCTGGAGTTCCGGGGCATCTTACTAACAATTACTATAGAGCGGATGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCGACCAAGGTTCACGCCGCACCTGGTGGGGGATCTTCTCTGGATTTCCTTTTCGGGAACGGTAGGAGCTAA

Protein sequence

MACAGKAICWLPTFCSLSLPLDPIFIPRRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQSTGKQTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS

Homology

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BLAST of ClCG11G004840 vs. Swiss-Prot
Match: SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQSTGKQTAAGVPGHLTNN 87
           R   SGGGQSSLGYLFG GE   S   ++K     +P  S+S    K+  AG+     NN
Sbjct: 3   RGVSSGGGQSSLGYLFGGGEAPKS---AEKPAPVQKPAPSSSAEKLKEIPAGIQSSKANN 62

Query: 88  YYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGR 127
           Y RA+GQNCGNF+TDRPSTKV AAPGGGSSLD+LF   +
Sbjct: 63  YMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSGNK 98

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BLAST of ClCG11G004840 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 58/105 (55.24%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 33  GGGQSSLGYLFGNGE-PANSVQASQKSNGSSEPVSSTSQ---------STGKQTAAGVPG 92
           GGGQSSLGYLFG+GE P  ++  +   +  + P+S+            +  KQ  AG+  
Sbjct: 8   GGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQIPAGINK 67

Query: 93  HLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 128
             TNNY RADGQN GNF+TDRPSTKVHAAPGGGSSLD+LFG G S
Sbjct: 68  SSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGGS 112

[Close]

BLAST of ClCG11G004840 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-23
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEP-----ANSVQASQKSNGSSEPVSSTSQSTG---KQTAAG 87
           R   +GGGQSSLGYLFG+GE       N   A  +S+  + P  + + +     KQ  AG
Sbjct: 3   RGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVPAG 62

Query: 88  VPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
           +  +  NNY RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G
Sbjct: 63  LNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGG 108

[Close]

BLAST of ClCG11G004840 vs. Swiss-Prot
Match: SP1L2_ORYSJ (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-22
Identity = 57/109 (52.29%), Postives = 66/109 (60.55%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSE----PVSSTSQSTG---------K 87
           R   SGGGQSSLGYLFG GE A + +A   +    E    PV   + +           K
Sbjct: 5   RGVSSGGGQSSLGYLFGGGETAPAAKAKPAAAAEKETTPAPVKKAAVAAAASPSAAEKMK 64

Query: 88  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           +  AG+     NNY+RA GQNCGNF+TDRPSTKVHAAPGGGSSL +LFG
Sbjct: 65  EIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFG 113

[Close]

BLAST of ClCG11G004840 vs. Swiss-Prot
Match: SP1L3_ARATH (Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-22
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 32  SGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQSTG-------------KQTAA 91
           +G  +SSLGYLFG+G+P+++  A+  +  ++   ++T  + G             K+T+A
Sbjct: 9   NGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNKKTSA 68

Query: 92  GVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           GV G   NNY+R++GQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG
Sbjct: 69  GVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112

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BLAST of ClCG11G004840 vs. TrEMBL
Match: B9IK91_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13090g PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.3e-29
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVS------STSQSTGKQTAAGVP 87
           R   +GGGQSSLGYLFGNGEPAN+   + K+ G+S  +S      S S    KQT AG+ 
Sbjct: 3   RGVSAGGGQSSLGYLFGNGEPANNSPVA-KNVGNSASISPSPKPASASPPIDKQTPAGIH 62

Query: 88  GHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
           G+LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 63  GNLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 105

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BLAST of ClCG11G004840 vs. TrEMBL
Match: A0A067JWW4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19962 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 68/96 (70.83%), Postives = 77/96 (80.21%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQSTGKQTAAGVPGHLTNN 87
           R   +GGGQSSLGYLFGNGE AN+ +A+ KS  S +P+   SQ   KQ  AG+ G+LTNN
Sbjct: 3   RGVSAGGGQSSLGYLFGNGESANNDKAA-KSPSSQKPIVG-SQPIDKQIPAGIHGNLTNN 62

Query: 88  YYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           YYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 63  YYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 96

[Close]

BLAST of ClCG11G004840 vs. TrEMBL
Match: B9T5M1_RICCO (SP1L, putative OS=Ricinus communis GN=RCOM_0048980 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26
Identity = 66/101 (65.35%), Postives = 74/101 (73.27%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQAS----QKSNGSSEPVSST-SQSTGKQTAAGVPG 87
           R   +GGGQSSLGYLFGNGE AN+  A+    Q +N S  P     S    K+  AG+ G
Sbjct: 3   RGVSAGGGQSSLGYLFGNGETANNSPAAKSVGQAANNSPSPKPVVASPPINKEIPAGIHG 62

Query: 88  HLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           +LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 63  NLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 103

[Close]

BLAST of ClCG11G004840 vs. TrEMBL
Match: M5WCG6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013570mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-26
Identity = 64/111 (57.66%), Postives = 74/111 (66.67%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGE------------PANSVQASQKSNGSSEPVSSTSQS-TGK 87
           R   SGGG+SSLGYLFG GE            P N          S +P + T+ +   K
Sbjct: 3   RGVSSGGGESSLGYLFGGGEEIKKPAPKKVDAPQNQAPVPSTEPPSQKPTAPTTPAEVNK 62

Query: 88  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
           QT AGVPG+ +NNY+RADGQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG G
Sbjct: 63  QTPAGVPGNTSNNYFRADGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 113

[Close]

BLAST of ClCG11G004840 vs. TrEMBL
Match: Q1EMR0_PLAMJ (Putative nitrilase-associated protein (Fragment) OS=Plantago major GN=nap1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 64/107 (59.81%), Postives = 71/107 (66.36%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQS---------TGKQTAA 87
           R   +GGGQSSLGYLFG GEPAN   A+  +    EPV   S             KQT A
Sbjct: 27  RGVSAGGGQSSLGYLFGGGEPANPKPAAAAALPPKEPVVDRSSKPAAPAQPVDNAKQTPA 86

Query: 88  GVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
           G+P    NNY RADGQNCGNFITDRPSTKVHAAPGGGS L++LFG+G
Sbjct: 87  GIPASAKNNYLRADGQNCGNFITDRPSTKVHAAPGGGSQLNYLFGDG 133

[Close]

BLAST of ClCG11G004840 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1)

HSP 1 Score: 110.2 bits (274), Expect = 9.8e-25
Identity = 58/105 (55.24%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 33  GGGQSSLGYLFGNGE-PANSVQASQKSNGSSEPVSSTSQ---------STGKQTAAGVPG 92
           GGGQSSLGYLFG+GE P  ++  +   +  + P+S+            +  KQ  AG+  
Sbjct: 8   GGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQIPAGINK 67

Query: 93  HLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 128
             TNNY RADGQN GNF+TDRPSTKVHAAPGGGSSLD+LFG G S
Sbjct: 68  SSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGGS 112

[Close]

BLAST of ClCG11G004840 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2)

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEP-----ANSVQASQKSNGSSEPVSSTSQSTG---KQTAAG 87
           R   +GGGQSSLGYLFG+GE       N   A  +S+  + P  + + +     KQ  AG
Sbjct: 3   RGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVPAG 62

Query: 88  VPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
           +  +  NNY RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G
Sbjct: 63  LNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGG 108

[Close]

BLAST of ClCG11G004840 vs. TAIR10
Match: AT3G02180.1 (AT3G02180.1 SPIRAL1-like3)

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 32  SGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQSTG-------------KQTAA 91
           +G  +SSLGYLFG+G+P+++  A+  +  ++   ++T  + G             K+T+A
Sbjct: 9   NGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNKKTSA 68

Query: 92  GVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           GV G   NNY+R++GQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG
Sbjct: 69  GVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112

[Close]

BLAST of ClCG11G004840 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-23
Identity = 60/117 (51.28%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 32  SGGGQSSLGYLFGNGEPANSVQASQKSN------------------GSSEPVSSTSQSTG 91
           SGGG+SSLGYLFG+GE   SV    K N                  G     ++T+ +TG
Sbjct: 9   SGGGESSLGYLFGSGE---SVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTTG 68

Query: 92  -----KQTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
                ++ +AGV G   NNYYR+DGQNCGNF+T+RPSTKVHAAPGGGSSL +LFG+G
Sbjct: 69  DKNKTEENSAGVRGS-PNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFGSG 121

[Close]

BLAST of ClCG11G004840 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-20
Identity = 56/113 (49.56%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 33  GGGQSSLGYLFGNGEPA-NSVQA-----SQKSNGSSEPVSSTSQST-------------G 92
           GGGQSSL YLFG   PA   V A     ++ +NG + PV++ + +               
Sbjct: 8   GGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTSVEPAELN 67

Query: 93  KQTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGR 127
           KQ  AG+   + NNY RA+GQN GNF+TDRPSTKVHAAPGGGSSLD+LF  G+
Sbjct: 68  KQIPAGIKTPV-NNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTGGK 119

[Close]

BLAST of ClCG11G004840 vs. NCBI nr
Match: gi|224141087|ref|XP_002323906.1| (hypothetical protein POPTR_0017s13090g [Populus trichocarpa])

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-29
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVS------STSQSTGKQTAAGVP 87
           R   +GGGQSSLGYLFGNGEPAN+   + K+ G+S  +S      S S    KQT AG+ 
Sbjct: 3   RGVSAGGGQSSLGYLFGNGEPANNSPVA-KNVGNSASISPSPKPASASPPIDKQTPAGIH 62

Query: 88  GHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
           G+LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG G
Sbjct: 63  GNLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGGG 105

[Close]

BLAST of ClCG11G004840 vs. NCBI nr
Match: gi|643714908|gb|KDP27263.1| (hypothetical protein JCGZ_19962 [Jatropha curcas])

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28
Identity = 68/96 (70.83%), Postives = 77/96 (80.21%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQSTGKQTAAGVPGHLTNN 87
           R   +GGGQSSLGYLFGNGE AN+ +A+ KS  S +P+   SQ   KQ  AG+ G+LTNN
Sbjct: 3   RGVSAGGGQSSLGYLFGNGESANNDKAA-KSPSSQKPIVG-SQPIDKQIPAGIHGNLTNN 62

Query: 88  YYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           YYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 63  YYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 96

[Close]

BLAST of ClCG11G004840 vs. NCBI nr
Match: gi|802715966|ref|XP_012084838.1| (PREDICTED: putative methylesterase 11, chloroplastic [Jatropha curcas])

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28
Identity = 68/96 (70.83%), Postives = 77/96 (80.21%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQASQKSNGSSEPVSSTSQSTGKQTAAGVPGHLTNN 87
           R   +GGGQSSLGYLFGNGE AN+ +A+ KS  S +P+   SQ   KQ  AG+ G+LTNN
Sbjct: 363 RGVSAGGGQSSLGYLFGNGESANNDKAA-KSPSSQKPIVG-SQPIDKQIPAGIHGNLTNN 422

Query: 88  YYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           YYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 423 YYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 456

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BLAST of ClCG11G004840 vs. NCBI nr
Match: gi|255585716|ref|XP_002533540.1| (PREDICTED: protein SPIRAL1-like 1 [Ricinus communis])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 66/101 (65.35%), Postives = 74/101 (73.27%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGEPANSVQAS----QKSNGSSEPVSST-SQSTGKQTAAGVPG 87
           R   +GGGQSSLGYLFGNGE AN+  A+    Q +N S  P     S    K+  AG+ G
Sbjct: 3   RGVSAGGGQSSLGYLFGNGETANNSPAAKSVGQAANNSPSPKPVVASPPINKEIPAGIHG 62

Query: 88  HLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 124
           +LTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSL +LFG
Sbjct: 63  NLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLGYLFG 103

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BLAST of ClCG11G004840 vs. NCBI nr
Match: gi|595849712|ref|XP_007209781.1| (hypothetical protein PRUPE_ppa013570mg [Prunus persica])

HSP 1 Score: 125.9 bits (315), Expect = 4.9e-26
Identity = 64/111 (57.66%), Postives = 74/111 (66.67%), Query Frame = 1


Query: 28  RRFPSGGGQSSLGYLFGNGE------------PANSVQASQKSNGSSEPVSSTSQS-TGK 87
           R   SGGG+SSLGYLFG GE            P N          S +P + T+ +   K
Sbjct: 3   RGVSSGGGESSLGYLFGGGEEIKKPAPKKVDAPQNQAPVPSTEPPSQKPTAPTTPAEVNK 62

Query: 88  QTAAGVPGHLTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNG 126
           QT AGVPG+ +NNY+RADGQNCGNF+TDRPSTKVHAAPGGGSSLD+LFG G
Sbjct: 63  QTPAGVPGNTSNNYFRADGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 113

The following BLAST results are available for this feature:

BLAST of ClCG11G004840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SP1L3_ORYSJ	1.3e-23	56.57	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1	[more]
SP1L1_ARATH	1.7e-23	55.24	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1	[more]
SP1L2_ARATH	3.0e-23	53.77	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1	[more]
SP1L2_ORYSJ	1.1e-22	52.29	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1	[more]
SP1L3_ARATH	2.5e-22	50.48	Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=1 SV=1	[more]

BLAST of ClCG11G004840 vs. TrEMBL


Match Name	E-value	Identity	Description
B9IK91_POPTR	3.3e-29	67.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13090g PE=4 SV=1	[more]
A0A067JWW4_JATCU	2.1e-28	70.83	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19962 PE=4 SV=1	[more]
B9T5M1_RICCO	1.5e-26	65.35	SP1L, putative OS=Ricinus communis GN=RCOM_0048980 PE=4 SV=1	[more]
M5WCG6_PRUPE	3.4e-26	57.66	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013570mg PE=4 SV=1	[more]
Q1EMR0_PLAMJ	4.4e-26	59.81	Putative nitrilase-associated protein (Fragment) OS=Plantago major GN=nap1 PE=2 ...	[more]

BLAST of ClCG11G004840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	9.8e-25	55.24	SPIRAL1-like1	[more]
AT1G69230.1	1.7e-24	53.77	SPIRAL1-like2	[more]
AT3G02180.1	1.4e-23	50.48	SPIRAL1-like3	[more]
AT5G15600.1	2.4e-23	51.28	SPIRAL1-like4	[more]
AT2G03680.1	1.9e-20	49.56	spiral1	[more]

BLAST of ClCG11G004840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|224141087\|ref\|XP_002323906.1\|	4.7e-29	67.31	hypothetical protein POPTR_0017s13090g [Populus trichocarpa]	[more]
gi\|643714908\|gb\|KDP27263.1\|	3.1e-28	70.83	hypothetical protein JCGZ_19962 [Jatropha curcas]	[more]
gi\|802715966\|ref\|XP_012084838.1\|	3.1e-28	70.83	PREDICTED: putative methylesterase 11, chloroplastic [Jatropha curcas]	[more]
gi\|255585716\|ref\|XP_002533540.1\|	2.2e-26	65.35	PREDICTED: protein SPIRAL1-like 1 [Ricinus communis]	[more]
gi\|595849712\|ref\|XP_007209781.1\|	4.9e-26	57.66	hypothetical protein PRUPE_ppa013570mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G004840.1	ClCG11G004840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 28..123 score: 4.6
None	No IPR available	PANTHER	PTHR33403:SF4	SUBFAMILY NOT NAMED	coord: 28..123 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G004840	Cla016514	Watermelon (97103) v1	wcgwmB107
ClCG11G004840	Cla97C11G211640	Watermelon (97103) v2	wcgwmbB065
ClCG11G004840	Bhi06G000273	Wax gourd	wcgwgoB151
ClCG11G004840	CmaCh04G028050	Cucurbita maxima (Rimu)	cmawcgB619
ClCG11G004840	Lsi03G001770	Bottle gourd (USVL1VR-Ls)	lsiwcgB226
ClCG11G004840	Cp4.1LG01g22550	Cucurbita pepo (Zucchini)	cpewcgB355
ClCG11G004840	Carg05887	Silver-seed gourd	carwcgB0019

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G004840	Silver-seed gourd	carwcgB0254
ClCG11G004840	Silver-seed gourd	carwcgB0255
ClCG11G004840	Cucumber (Chinese Long) v3	cucwcgB376
ClCG11G004840	Cucumber (Chinese Long) v3	cucwcgB380
ClCG11G004840	Watermelon (97103) v2	wcgwmbB074
ClCG11G004840	Watermelon (Charleston Gray)	wcgwcgB070
ClCG11G004840	Cucumber (Gy14) v1	cgywcgB267
ClCG11G004840	Cucurbita maxima (Rimu)	cmawcgB252
ClCG11G004840	Cucurbita moschata (Rifu)	cmowcgB239
ClCG11G004840	Cucurbita moschata (Rifu)	cmowcgB240
ClCG11G004840	Cucurbita moschata (Rifu)	cmowcgB621
ClCG11G004840	Wild cucumber (PI 183967)	cpiwcgB370
ClCG11G004840	Wild cucumber (PI 183967)	cpiwcgB372
ClCG11G004840	Cucumber (Chinese Long) v2	cuwcgB353
ClCG11G004840	Cucumber (Chinese Long) v2	cuwcgB355
ClCG11G004840	Melon (DHL92) v3.5.1	mewcgB008
ClCG11G004840	Melon (DHL92) v3.5.1	mewcgB009
ClCG11G004840	Melon (DHL92) v3.5.1	mewcgB049
ClCG11G004840	Cucurbita pepo (Zucchini)	cpewcgB159
ClCG11G004840	Cucurbita pepo (Zucchini)	cpewcgB163
ClCG11G004840	Cucumber (Gy14) v2	cgybwcgB328
ClCG11G004840	Melon (DHL92) v3.6.1	medwcgB008
ClCG11G004840	Melon (DHL92) v3.6.1	medwcgB049