Lsi03G001630 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G001630
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRibosomal protein S19 component of cytosolic 80S ribosome and 40S small subunit
Locationchr03 : 2214482 .. 2215774 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGGGGGGGAAATCCAAAAATGTAACAGGCCAAGCCCAAATGAACCATCAACTAATATAAAACGCTGGGAAGCCCTAGCCTAGGGTTACTCTCTCTTTCTCTCGATCATCTGCACTCGCTCAACCATGGCGACGGCAAAGACTGTGAAAGATGTCTCCCCTCACGAATTCGTGAAAGCCTATGCGGCTCATCTCAAGAGATCCGGAAAGGTATTCTTTTTCATCTCTACTTTGCATTTATTGATTTGGTGGCTTACAGAAGTTTAATGCGGATTGAAGAGAGTATTCTAGGATGTCAATTTTGTTCATGAAGTTAAGGCTAGGCTTGTTTCTCTGTAATCTGGCTGCTTCTGGTCGTTAGTTTGTTCGAGCTTTAGGGTTTCGGTTGATCCTGTTTTTGTTAGAATCGTAATGTGCTCCTGATTTATATGAATCTTTTAACTCATTTGGTGAATCTCGTTCTTACCAGCTAGGTGGTTGGTTTCGTAATGTGGTATTTTGAACTTTTTCGGAATCTCCTTAGTTTCGTTACATGATTTTAATTCCCATACTCTAAATAGTTGGCATTCTGTTCCTGATATGTTATAACTTGTGTACATTATATTTTCTTTGTTCGTTAATAAATCGACTAGGATATGTTTTAACTTGCTATTCTATTCAATAATTGTCAAGCAGGTTGAACTACCTCCCTGGACTGATATAGTTAAGACTGCAAGATTCAAAGAATTGGCACCTTATGATGCTGATTGGTATTATCTGAGAGCTGGTCAGTCCCCTCTTTTCATCCATTGAAATGAATTGCTGCCCTCATTCATTGTCTTATGATTACTTTTTCAAACTTATTCAGCAAGCATGGCTAGGAAGATCTATTTGAGGGGAGGTCTTGGTGTGGGGGCTTTTAAACGGATTTATGGTGGAAGCAAAAGGAATGGGAGCCGCCCTCCGCACTTCTGCGAAAGCAGTGGTGCTATCGCCCGTCATATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCCAAGGGGTGAGTACAGAGTTCTTATTAGGTTTAGCCCTTACATTCGATGGGGTTCAAGTTTAATGCCGACCGATTGTAATTGATGATGCATCCAAGCTTTGTTCTTTGCACTTATTTCAAATCTTGATCCAAAGTTATAAATTTAATCTGATCTTGGTTAATGTTGATTGATATCTTTTTGATGTGTTTGCAGTGGTAGGAGAATCACATCAAGCGGTCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

mRNA sequence

AAAAAGGGGGGGAAATCCAAAAATGTAACAGGCCAAGCCCAAATGAACCATCAACTAATATAAAACGCTGGGAAGCCCTAGCCTAGGGTTACTCTCTCTTTCTCTCGATCATCTGCACTCGCTCAACCATGGCGACGGCAAAGACTGTGAAAGATGTCTCCCCTCACGAATTCGTGAAAGCCTATGCGGCTCATCTCAAGAGATCCGGAAAGGTTGAACTACCTCCCTGGACTGATATAGTTAAGACTGCAAGATTCAAAGAATTGGCACCTTATGATGCTGATTGGTATTATCTGAGAGCTGCAAGCATGGCTAGGAAGATCTATTTGAGGGGAGGTCTTGGTGTGGGGGCTTTTAAACGGATTTATGGTGGAAGCAAAAGGAATGGGAGCCGCCCTCCGCACTTCTGCGAAAGCAGTGGTGCTATCGCCCGTCATATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCCAAGGGTGGTAGGAGAATCACATCAAGCGGTCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

Coding sequence (CDS)

ATGGCGACGGCAAAGACTGTGAAAGATGTCTCCCCTCACGAATTCGTGAAAGCCTATGCGGCTCATCTCAAGAGATCCGGAAAGGTTGAACTACCTCCCTGGACTGATATAGTTAAGACTGCAAGATTCAAAGAATTGGCACCTTATGATGCTGATTGGTATTATCTGAGAGCTGCAAGCATGGCTAGGAAGATCTATTTGAGGGGAGGTCTTGGTGTGGGGGCTTTTAAACGGATTTATGGTGGAAGCAAAAGGAATGGGAGCCGCCCTCCGCACTTCTGCGAAAGCAGTGGTGCTATCGCCCGTCATATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCCAAGGGTGGTAGGAGAATCACATCAAGCGGTCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

Protein sequence

MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Homology
[Close]
BLAST of Lsi03G001630 vs. Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-68
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Lsi03G001630 vs. Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-68
Identity = 121/143 (84.62%), Postives = 133/143 (93.01%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Lsi03G001630 vs. Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-66
Identity = 120/139 (86.33%), Postives = 131/139 (94.24%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Lsi03G001630 vs. Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-62
Identity = 112/140 (80.00%), Postives = 128/140 (91.43%), Query Frame = 1 

Query: 2   ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASM 61
           +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of Lsi03G001630 vs. Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-44
Identity = 76/134 (56.72%), Postives = 109/134 (81.34%), Query Frame = 1 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+ DWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]
BLAST of Lsi03G001630 vs. TrEMBL
Match: A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.4e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lsi03G001630 vs. TrEMBL
Match: A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.4e-74
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lsi03G001630 vs. TrEMBL
Match: B9H0J0_POPTR (40S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.0e-72
Identity = 131/143 (91.61%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATAKTVKDVSPHEFVKAY+AHLKRSGKVELPPWTDIVKTA+FKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFC+SSG++ARHILQQLQ MNI+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143

[Close]
BLAST of Lsi03G001630 vs. TrEMBL
Match: M5X6J8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-71
Identity = 132/143 (92.31%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKT  FKELAPYD DWYY+RAAS
Sbjct: 64  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGTFKELAPYDPDWYYVRAAS 123

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           +ARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFCESSGAIARHILQQLQ+MNIVD+DPKG
Sbjct: 124 IARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCESSGAIARHILQQLQKMNIVDLDPKG 183

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVV P
Sbjct: 184 GRRITSSGQRDLDQVAGRIVVTP 206

[Close]
BLAST of Lsi03G001630 vs. TrEMBL
Match: A0A067GB82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032309mg PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.3e-70
Identity = 128/143 (89.51%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATA+TVKDVSPHEFVKAY+AHLKRSGK+ELPPWTDIVKTA+FKELAPYD DWYY+RAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLR GLGVG+F+RIYGGSKRNGSRPPHFC+SSGAIARHILQQLQ MNI+D++PKG
Sbjct: 61  MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143

[Close]
BLAST of Lsi03G001630 vs. TAIR10
Match: AT5G61170.1 (AT5G61170.1 Ribosomal protein S19e family protein)

HSP 1 Score: 259.2 bits (661), Expect = 1.5e-69
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Lsi03G001630 vs. TAIR10
Match: AT3G02080.1 (AT3G02080.1 Ribosomal protein S19e family protein)

HSP 1 Score: 258.8 bits (660), Expect = 1.9e-69
Identity = 121/143 (84.62%), Postives = 133/143 (93.01%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Lsi03G001630 vs. TAIR10
Match: AT5G15520.1 (AT5G15520.1 Ribosomal protein S19e family protein)

HSP 1 Score: 253.8 bits (647), Expect = 6.2e-68
Identity = 120/139 (86.33%), Postives = 131/139 (94.24%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Lsi03G001630 vs. NCBI nr
Match: gi|449447418|ref|XP_004141465.1| (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 3.4e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lsi03G001630 vs. NCBI nr
Match: gi|659100984|ref|XP_008451369.1| (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 6.4e-75
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lsi03G001630 vs. NCBI nr
Match: gi|1009125758|ref|XP_015879782.1| (PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba])

HSP 1 Score: 285.4 bits (729), Expect = 5.4e-74
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQ MNI+D+DPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQNMNIIDIDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143

[Close]
BLAST of Lsi03G001630 vs. NCBI nr
Match: gi|449462326|ref|XP_004148892.1| (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 9.2e-74
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

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BLAST of Lsi03G001630 vs. NCBI nr
Match: gi|694379321|ref|XP_009365857.1| (PREDICTED: 40S ribosomal protein S19-3 [Pyrus x bretschneideri])

HSP 1 Score: 282.3 bits (721), Expect = 4.6e-73
Identity = 136/143 (95.10%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCESSGAIARHILQQLQ+MNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCESSGAIARHILQQLQKMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVV P
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVTP 143

The following BLAST results are available for this feature:
BLAST of Lsi03G001630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS193_ARATH2.6e-6885.9240S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1[more]
RS191_ARATH3.4e-6884.6240S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1[more]
RS192_ARATH1.1e-6686.3340S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1[more]
RS19_ORYSJ1.6e-6280.0040S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1[more]
RS19_MYAAR1.2e-4456.7240S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1[more]
BLAST of Lsi03G001630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSI3_CUCSA2.4e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1[more]
A0A0A0K500_CUCSA6.4e-7496.50Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1[more]
B9H0J0_POPTR6.0e-7291.6140S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1[more]
M5X6J8_PRUPE1.3e-7192.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1[more]
A0A067GB82_CITSI4.3e-7089.51Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032309mg PE=4 SV=1[more]
BLAST of Lsi03G001630 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61170.11.5e-6985.92 Ribosomal protein S19e family protein[more]
AT3G02080.11.9e-6984.62 Ribosomal protein S19e family protein[more]
AT5G15520.16.2e-6886.33 Ribosomal protein S19e family protein[more]
BLAST of Lsi03G001630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447418|ref|XP_004141465.1|3.4e-76100.00PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus][more]
gi|659100984|ref|XP_008451369.1|6.4e-7597.90PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo][more]
gi|1009125758|ref|XP_015879782.1|5.4e-7495.80PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba][more]
gi|449462326|ref|XP_004148892.1|9.2e-7496.50PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus][more]
gi|694379321|ref|XP_009365857.1|4.6e-7395.10PREDICTED: 40S ribosomal protein S19-3 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018277Ribosomal_S19e_CS
IPR011991Winged helix-turn-helix DNA-binding domain
IPR001266Ribosomal_S19e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001630.1Lsi03G001630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 2..120
score: 2.0
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 6..142
score: 4.9
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..140
score: 2.1
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..142
score: 2.9
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 99..136
score: 1.
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 6..141
score: 4.97
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G001630Csa5G638420Cucumber (Chinese Long) v2culsiB353
Lsi03G001630CSPI05G29320Wild cucumber (PI 183967)cpilsiB357
Lsi03G001630Cucsa.157920Cucumber (Gy14) v1cgylsiB254
Lsi03G001630CmaCh15G002430Cucurbita maxima (Rimu)cmalsiB276
Lsi03G001630CmaCh04G027980Cucurbita maxima (Rimu)cmalsiB656
Lsi03G001630CmoCh04G029300Cucurbita moschata (Rifu)cmolsiB645
Lsi03G001630CmoCh15G002520Cucurbita moschata (Rifu)cmolsiB265
Lsi03G001630Cla016528Watermelon (97103) v1lsiwmB278
Lsi03G001630MELO3C022027Melon (DHL92) v3.5.1lsimeB233
Lsi03G001630ClCG11G004690Watermelon (Charleston Gray)lsiwcgB226
Lsi03G001630MELO3C022027.2Melon (DHL92) v3.6.1lsimedB243
Lsi03G001630Cla97C11G211480Watermelon (97103) v2lsiwmbB222
Lsi03G001630Bhi06G000284Wax gourdlsiwgoB312
Lsi03G001630Cp4.1LG01g22500Cucurbita pepo (Zucchini)cpelsiB339
Lsi03G001630Cp4.1LG13g08210Cucurbita pepo (Zucchini)cpelsiB143
Lsi03G001630CsGy5G028730Cucumber (Gy14) v2cgyblsiB325
Lsi03G001630Carg05880Silver-seed gourdcarlsiB017
Lsi03G001630Carg02225Silver-seed gourdcarlsiB236
Lsi03G001630CsaV3_5G038460Cucumber (Chinese Long) v3cuclsiB378
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G001630Wild cucumber (PI 183967)cpilsiB362
Lsi03G001630Cucumber (Chinese Long) v2culsiB359
Lsi03G001630Melon (DHL92) v3.5.1lsimeB238
Lsi03G001630Watermelon (Charleston Gray)lsiwcgB245
Lsi03G001630Melon (DHL92) v3.6.1lsimedB249
Lsi03G001630Cucumber (Chinese Long) v3cuclsiB384