Carg05880 (gene) Silver-seed gourd

Overview
NameCarg05880
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S19, putative
LocationCucurbita_argyrosperma_scaffold_026 : 39614 .. 40870 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGGCGAAGACTGTCAAGGACGTCTCTCCTCACGAATTCGTGAAAGCCTATGCGGCACATCTTAAGAGATCTGGAAAGGTATTGATTTCTCATCTCTACTTCACCTCTGTCGATTTGGTGGCTTACAGAAGTTGAATGTGGATTAAAGAGAGCATTTTAGGATGTAGATTTTGATCGTGGAGTGAAGGCTAGGTTCGTTTCGGTGTAATTTCTCTGTTTTCAGCTTTTTCGGGCTAGTTTGGAGGTTTTAGGGTTTTAGTTGATCCTTATTTGTTGTGTTAGAGCCTTATTGTGCTCCTGATTTATAAGAGTAGCTTTTTTTTATATGTTTGGTGAAGATTCCGTTGTTACTAGTCTAGTTGGTTGTGAAACACGCACGCTTTGAATATGTTGTTCTGGTTATTTGTATTTTGTTCTTACATGCCCTCGCGTACTTTTGAGATCTAATTAATTTTGTGACATGTTCTTCGTCTAAACAATTTCGTAACACGAGATTTTGAACTTTTTGGAATCTCCATAGTTTTGTTAGAAGATTTTAATTCCAATCCTCTAAATAGTTGACTTTCTTCCTGACGTGTTATCACTTTGTTGTACATAAAGTATTTCTTGTTCGAAATAATTCGACTAGGATTTGTTTTTAACTTGCTATTCAATCATTGCCAAGCAGGTTGAACTTCCTCCATGGACTGATATAGTTAAAACTGCAAGATTCAAAGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTGAGAGCTGGTCAGTCCCCCCCTTCTCGTCCATTTGTATTCCATATATTCATTTGCAATAAAACCTACCAATATGAATTGCTGCTATCATGTATGTAACGTCTTCCCTCACTGTCTCATGATTACCTTTTCAAACTTCTTTAGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTCGGTGTGGGGGCTTTTAAGAGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTCTGTGAGAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAATATTGTTGATGTCGATCCCAAGGGGTGAGTGCAAAACTCTTGGGTTTTGCCCCTTACATCTGATATTCCAAATTCAATGTCAATCGAACATATTTGATGTATTTTTCTCTCCGTATGTGTTCACAGTGGCAGGAGAATCACATCAAGCGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

mRNA sequence

ATGGCGACGGCGAAGACTGTCAAGGACGTCTCTCCTCACGAATTCGTGAAAGCCTATGCGGCACATCTTAAGAGATCTGGAAAGGTTGAACTTCCTCCATGGACTGATATAGTTAAAACTGCAAGATTCAAAGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTGAGAGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTCGGTGTGGGGGCTTTTAAGAGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTCTGTGAGAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAATATTGTTGATGTCGATCCCAAGGGTGGCAGGAGAATCACATCAAGCGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

Coding sequence (CDS)

ATGGCGACGGCGAAGACTGTCAAGGACGTCTCTCCTCACGAATTCGTGAAAGCCTATGCGGCACATCTTAAGAGATCTGGAAAGGTTGAACTTCCTCCATGGACTGATATAGTTAAAACTGCAAGATTCAAAGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTGAGAGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTCGGTGTGGGGGCTTTTAAGAGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTCTGTGAGAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAATATTGTTGATGTCGATCCCAAGGGTGGCAGGAGAATCACATCAAGCGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

Protein sequence

MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Homology
[Close]
BLAST of Carg05880 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 2.3e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 5.1e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 5.1e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. NCBI nr
Match: XP_004141465.1 (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >KGN52503.1 hypothetical protein Csa_5G638420 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 4.3e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. NCBI nr
Match: XP_015879782.1 (40S ribosomal protein S19-3 [Ziziphus jujuba])

HSP 1 Score: 290.0 bits (741), Expect = 4.3e-75
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQ MNI+D+DPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQNMNIIDIDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. TAIR10
Match: AT5G61170.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 263.1 bits (671), Expect = 1.0e-70
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Carg05880 vs. TAIR10
Match: AT3G02080.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-70
Identity = 122/143 (85.31%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Carg05880 vs. TAIR10
Match: AT5G15520.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 257.3 bits (656), Expect = 5.6e-69
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Carg05880 vs. Swiss-Prot
Match: sp|Q9FNP8|RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.8e-69
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Carg05880 vs. Swiss-Prot
Match: sp|Q9SGA6|RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-69
Identity = 122/143 (85.31%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Carg05880 vs. Swiss-Prot
Match: sp|Q9LF30|RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.0e-67
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Carg05880 vs. Swiss-Prot
Match: sp|P40978|RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-63
Identity = 113/140 (80.71%), Postives = 129/140 (92.14%), Query Frame = 0 

Query: 2   ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of Carg05880 vs. Swiss-Prot
Match: sp|Q94613|RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-45
Identity = 77/134 (57.46%), Postives = 110/134 (82.09%), Query Frame = 0 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]
BLAST of Carg05880 vs. TrEMBL
Match: tr|A0A1S3CB93|A0A1S3CB93_CUCME (40S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.8e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. TrEMBL
Match: tr|A0A0A0KSI3|A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.8e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. TrEMBL
Match: tr|A0A1S3BRB2|A0A1S3BRB2_CUCME (40S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.1e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. TrEMBL
Match: tr|A0A0A0K500|A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg05880 vs. TrEMBL
Match: tr|B9H0J0|B9H0J0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G118800v3 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 7.7e-73
Identity = 132/143 (92.31%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAY+AHLKRSGKVELPPWTDIVKTA+FKELAPYDPDWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFC+SSG++ARHILQQLQ MNI+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143

The following BLAST results are available for this feature:
BLAST of Carg05880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923365.12.3e-76100.0040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso... [more]
XP_022938991.15.1e-7699.3040S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p... [more]
XP_022954406.15.1e-7699.3040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso... [more]
XP_004141465.14.3e-7598.60PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICT... [more]
XP_015879782.14.3e-7597.2040S ribosomal protein S19-3 [Ziziphus jujuba][more]
BLAST of Carg05880 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61170.11.0e-7086.62Ribosomal protein S19e family protein[more]
AT3G02080.11.3e-7085.31Ribosomal protein S19e family protein[more]
AT5G15520.15.6e-6987.05Ribosomal protein S19e family protein[more]
BLAST of Carg05880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FNP8|RS193_ARATH1.8e-6986.6240S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1[more]
sp|Q9SGA6|RS191_ARATH2.4e-6985.3140S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1[more]
sp|Q9LF30|RS192_ARATH1.0e-6787.0540S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1[more]
sp|P40978|RS19_ORYSJ1.5e-6380.7140S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=... [more]
sp|Q94613|RS19_MYAAR1.1e-4557.4640S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1[more]
BLAST of Carg05880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CB93|A0A1S3CB93_CUCME2.8e-7598.6040S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=4 SV=1[more]
tr|A0A0A0KSI3|A0A0A0KSI3_CUCSA2.8e-7598.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=4 SV=1[more]
tr|A0A1S3BRB2|A0A1S3BRB2_CUCME1.1e-7497.9040S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=4 SV... [more]
tr|A0A0A0K500|A0A0A0K500_CUCSA1.6e-7396.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=4 SV=1[more]
tr|B9H0J0|B9H0J0_POPTR7.7e-7392.31Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G118800v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR018277Ribosomal_S19e_CS
IPR038111Ribosomal_S19e_sf
IPR001266Ribosomal_S19e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05880-RACarg05880-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..142
e-value: 1.9E-85
score: 299.9
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..140
e-value: 2.5E-57
score: 192.3
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 1..142
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 2..120
e-value: 2.0E-59
score: 577.0
IPR038111Ribosomal protein S19e domain superfamilyGENE3DG3DSA:1.10.10.2700coord: 1..142
e-value: 9.3E-64
score: 215.9
NoneNo IPR availablePANTHERPTHR11710:SF8SUBFAMILY NOT NAMEDcoord: 1..142
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 6..141