CmoCh15G002520 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G002520
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description40S ribosomal protein S19
LocationCmo_Chr15 : 1232942 .. 1234308 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTAGCCCTAGGGTTACTCTCTCTTTTTCACGATCAACTGCACTTGCTCCAAGCATGGCGACGGCAAAAACTGTGAAAGATGTCTCTCCTCATGAATTCGTGAAAGCATATGCTGCTCATCTCAAGAGATCCGGGAAGGTATTGATTTTTTTTTTTTTTTTTTAATTTCTACTGTTTTTTTGTTGATCTAATGGCTTATGGAAGTAATGTGGATTGAAATGAGTGTTTTAGGATGTCGATTTTGGTTATGGAGTGAGGCCTTAGCTCTTTCACGGAGGGTGAAATTGTTTGTGTGTGATTAGGCCTATTTTCGACTTCTGCGGGGTTGTTTGCAGGTTTATGGGTTTTGGTTGTTTCTTTTTTGTATTCGTTTAAACCTTCATGTGCTTCTGATTTATATATGTCGTTGCTTTCGGATTCTTTTGATGAAGATTGCTTTGTTACGAGTATTTGGTAGCGTTAGCACGAACGCTTTAAATATGTCTGTTCTTGTTATTTGTATTTTCTACTTCTCTTTCTGGGCTTCTTGAGTCCTTCTAGGATCTAATTGATTTTGTCTACATGTTCGTCGTAATGTGAGGTTTTAGATCATTCTGCAACCCCCCTAGTTTTTGTTCGCTGTTGTTTGTGCGTATCCTATTAATAGTTTGCGTTCTGTTCCTGGTTTGCTAATCCTTTCGACGTTATATGTTCCTCGTTTGTTAATAAATCGACTAGCATCTGTCTTAATAACTTATCGTTCATTCATTGCCGTGCAGGTTGAACTTCCCCCGTGGACGGATATAGTTAAGACTGCAAGATTCAAGGAGCTTGCACCTTATGATCCAGATTGGTACTATGTGAGAGCTGGTCAGTCTCCAGCATCTTCCACTTGTTTTCCATGCATTATATATACTTTTCATTAGTCTCAATGTCTCACCAAACTTATTCAGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGCGTTGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGCGAAAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCCAAGGGGTGAGTTCAAATGAACATTGTTGATGTTGATCCCAAGGAAATGAACATTGTTGATGTACATCTGATGTTCCAAGTTTTTTGTCAATGTTGATACAACCATGATTTGATTTTATTGCACTGATTTCATATCATGGGGTCATTGTTGATTGATAGTGTTTCTCTCCGAATAACTTACAGTGGCAGGAAAATCACTTCAAGCGGACGGCGGGATCTCGACCAAGTTGCTGGCCGGATAGTTGTTGCCCCCTGA

mRNA sequence

CCCTAGCCCTAGGGTTACTCTCTCTTTTTCACGATCAACTGCACTTGCTCCAAGCATGGCGACGGCAAAAACTGTGAAAGATGTCTCTCCTCATGAATTCGTGAAAGCATATGCTGCTCATCTCAAGAGATCCGGGAAGGTTGAACTTCCCCCGTGGACGGATATAGTTAAGACTGCAAGATTCAAGGAGCTTGCACCTTATGATCCAGATTGGTACTATGTGAGAGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGCGTTGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGCGAAAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCCAAGGGTGTTTCTCTCCGAATAACTTACAGTGGCAGGAAAATCACTTCAAGCGGACGGCGGGATCTCGACCAAGTTGCTGGCCGGATAGTTGTTGCCCCCTGA

Coding sequence (CDS)

ATGGCGACGGCAAAAACTGTGAAAGATGTCTCTCCTCATGAATTCGTGAAAGCATATGCTGCTCATCTCAAGAGATCCGGGAAGGTTGAACTTCCCCCGTGGACGGATATAGTTAAGACTGCAAGATTCAAGGAGCTTGCACCTTATGATCCAGATTGGTACTATGTGAGAGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGCGTTGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGCGAAAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCCAAGGGTGTTTCTCTCCGAATAACTTACAGTGGCAGGAAAATCACTTCAAGCGGACGGCGGGATCTCGACCAAGTTGCTGGCCGGATAGTTGTTGCCCCCTGA
Homology
[Close]
BLAST of CmoCh15G002520 vs. Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-67
Identity = 124/150 (82.67%), Postives = 133/150 (88.67%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVA 151
                   GRKITSSG+RDLDQVAGRI  A
Sbjct: 121 --------GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of CmoCh15G002520 vs. Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 8.8e-67
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSG+RDLDQVAGRI V P
Sbjct: 121 --------GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of CmoCh15G002520 vs. Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.7e-65
Identity = 120/147 (81.63%), Postives = 132/147 (89.80%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRI 148
                   GR+ITSSG+RDLDQVAGRI
Sbjct: 121 --------GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of CmoCh15G002520 vs. Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-61
Identity = 113/148 (76.35%), Postives = 129/148 (87.16%), Query Frame = 1 

Query: 2   ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGV 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPKG 
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKG- 123

Query: 122 SLRITYSGRKITSSGRRDLDQVAGRIVV 150
                  GR ITS GRRDLDQVAGR+ V
Sbjct: 124 -------GRLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of CmoCh15G002520 vs. Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-43
Identity = 76/142 (53.52%), Postives = 110/142 (77.46%), Query Frame = 1 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGVSLRI 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP G     
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNG----- 123

Query: 126 TYSGRKITSSGRRDLDQVAGRI 148
              GR++TS GRRDLD++A +I
Sbjct: 124 ---GRRLTSQGRRDLDRIAAQI 137

[Close]
BLAST of CmoCh15G002520 vs. TrEMBL
Match: A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.8e-73
Identity = 140/151 (92.72%), Postives = 142/151 (94.04%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 --------GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmoCh15G002520 vs. TrEMBL
Match: A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.2e-71
Identity = 137/151 (90.73%), Postives = 139/151 (92.05%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 --------GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmoCh15G002520 vs. TrEMBL
Match: B9H0J0_POPTR (40S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.6e-70
Identity = 131/151 (86.75%), Postives = 142/151 (94.04%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAY+AHLKRSGKVELPPWTDIVKTA+FKELAPYDPDWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFC+SSG++ARHILQQLQ MNI+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSG+RDLDQVAGRIVVAP
Sbjct: 121 --------GRRITSSGQRDLDQVAGRIVVAP 143

[Close]
BLAST of CmoCh15G002520 vs. TrEMBL
Match: M5X6J8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-70
Identity = 133/151 (88.08%), Postives = 140/151 (92.72%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGK+ELPPWTDIVKT  FKELAPYDPDWYYVRAAS
Sbjct: 64  MATAKTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGTFKELAPYDPDWYYVRAAS 123

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           +ARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFCESSGAIARHILQQLQ+MNIVD+DPKG
Sbjct: 124 IARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCESSGAIARHILQQLQKMNIVDLDPKG 183

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSG+RDLDQVAGRIVV P
Sbjct: 184 --------GRRITSSGQRDLDQVAGRIVVTP 206

[Close]
BLAST of CmoCh15G002520 vs. TrEMBL
Match: V4UXJ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013054mg PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.6e-69
Identity = 129/151 (85.43%), Postives = 141/151 (93.38%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAY+AHLKRSGK+ELPPWTDIVKTA+FKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLR GLGVG+F+RIYGGSKRNGSRPPHFC+SSGAIARHILQQLQ MNI+D++PKG
Sbjct: 61  MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSG+RDLDQVAGRIVVAP
Sbjct: 121 --------GRRITSSGQRDLDQVAGRIVVAP 143

[Close]
BLAST of CmoCh15G002520 vs. TAIR10
Match: AT5G61170.1 (AT5G61170.1 Ribosomal protein S19e family protein)

HSP 1 Score: 256.9 bits (655), Expect = 7.7e-69
Identity = 124/150 (82.67%), Postives = 133/150 (88.67%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVA 151
                   GRKITSSG+RDLDQVAGRI  A
Sbjct: 121 --------GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of CmoCh15G002520 vs. TAIR10
Match: AT3G02080.1 (AT3G02080.1 Ribosomal protein S19e family protein)

HSP 1 Score: 254.2 bits (648), Expect = 5.0e-68
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSG+RDLDQVAGRI V P
Sbjct: 121 --------GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of CmoCh15G002520 vs. TAIR10
Match: AT5G15520.1 (AT5G15520.1 Ribosomal protein S19e family protein)

HSP 1 Score: 248.8 bits (634), Expect = 2.1e-66
Identity = 120/147 (81.63%), Postives = 132/147 (89.80%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRI 148
                   GR+ITSSG+RDLDQVAGRI
Sbjct: 121 --------GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of CmoCh15G002520 vs. NCBI nr
Match: gi|449447418|ref|XP_004141465.1| (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 8.3e-73
Identity = 140/151 (92.72%), Postives = 142/151 (94.04%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 --------GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmoCh15G002520 vs. NCBI nr
Match: gi|1009125758|ref|XP_015879782.1| (PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba])

HSP 1 Score: 281.6 bits (719), Expect = 8.3e-73
Identity = 138/151 (91.39%), Postives = 142/151 (94.04%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQ MNI+D+DPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQNMNIIDIDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSG+RDLDQVAGRIVVAP
Sbjct: 121 --------GRRITSSGQRDLDQVAGRIVVAP 143

[Close]
BLAST of CmoCh15G002520 vs. NCBI nr
Match: gi|659100984|ref|XP_008451369.1| (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 3.1e-72
Identity = 139/151 (92.05%), Postives = 141/151 (93.38%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 --------GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmoCh15G002520 vs. NCBI nr
Match: gi|694379321|ref|XP_009365857.1| (PREDICTED: 40S ribosomal protein S19-3 [Pyrus x bretschneideri])

HSP 1 Score: 278.5 bits (711), Expect = 7.0e-72
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCESSGAIARHILQQLQ+MNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCESSGAIARHILQQLQKMNIVDVDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GR+ITSSG+RDLDQVAGRIVV P
Sbjct: 121 --------GRRITSSGQRDLDQVAGRIVVTP 143

[Close]
BLAST of CmoCh15G002520 vs. NCBI nr
Match: gi|657975134|ref|XP_008379408.1| (PREDICTED: 40S ribosomal protein S19-3 [Malus domestica])

HSP 1 Score: 278.1 bits (710), Expect = 9.1e-72
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 1 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCESSGAIARHILQQLQ+MNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCESSGAIARHILQQLQKMNIVDVDPKG 120

Query: 121 VSLRITYSGRKITSSGRRDLDQVAGRIVVAP 152
                   GRKITS+G+RDLDQVAGRIV+ P
Sbjct: 121 --------GRKITSNGQRDLDQVAGRIVITP 143

The following BLAST results are available for this feature:
BLAST of CmoCh15G002520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS193_ARATH1.4e-6782.6740S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1[more]
RS191_ARATH8.8e-6780.1340S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1[more]
RS192_ARATH3.7e-6581.6340S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1[more]
RS19_ORYSJ1.9e-6176.3540S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1[more]
RS19_MYAAR3.1e-4353.5240S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1[more]
BLAST of CmoCh15G002520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSI3_CUCSA5.8e-7392.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638420 PE=4 SV=1[more]
A0A0A0K500_CUCSA3.2e-7190.73Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390010 PE=4 SV=1[more]
B9H0J0_POPTR1.6e-7086.7540S ribosomal protein S19 OS=Populus trichocarpa GN=POPTR_0004s11780g PE=4 SV=1[more]
M5X6J8_PRUPE2.0e-7088.08Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011540mg PE=4 SV=1[more]
V4UXJ0_9ROSI6.6e-6985.43Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013054mg PE=4 SV=1[more]
BLAST of CmoCh15G002520 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61170.17.7e-6982.67 Ribosomal protein S19e family protein[more]
AT3G02080.15.0e-6880.13 Ribosomal protein S19e family protein[more]
AT5G15520.12.1e-6681.63 Ribosomal protein S19e family protein[more]
BLAST of CmoCh15G002520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447418|ref|XP_004141465.1|8.3e-7392.72PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus][more]
gi|1009125758|ref|XP_015879782.1|8.3e-7391.39PREDICTED: 40S ribosomal protein S19-3 [Ziziphus jujuba][more]
gi|659100984|ref|XP_008451369.1|3.1e-7292.05PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo][more]
gi|694379321|ref|XP_009365857.1|7.0e-7290.73PREDICTED: 40S ribosomal protein S19-3 [Pyrus x bretschneideri][more]
gi|657975134|ref|XP_008379408.1|9.1e-7290.07PREDICTED: 40S ribosomal protein S19-3 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001266Ribosomal_S19e
IPR011991Winged helix-turn-helix DNA-binding domain
IPR018277Ribosomal_S19e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G002520.1CmoCh15G002520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 2..120
score: 1.0
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 6..150
score: 1.5
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..148
score: 1.8
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..150
score: 9.9
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 6..149
score: 9.52
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G002520Cucsa.157920Cucumber (Gy14) v1cgycmoB0439
CmoCh15G002520CmaCh15G002430Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G002520CmaCh04G027980Cucurbita maxima (Rimu)cmacmoB692
CmoCh15G002520Cla016528Watermelon (97103) v1cmowmB275
CmoCh15G002520Csa5G638420Cucumber (Chinese Long) v2cmocuB287
CmoCh15G002520MELO3C022027Melon (DHL92) v3.5.1cmomeB239
CmoCh15G002520ClCG11G004690Watermelon (Charleston Gray)cmowcgB240
CmoCh15G002520CSPI05G29320Wild cucumber (PI 183967)cmocpiB296
CmoCh15G002520Lsi03G001630Bottle gourd (USVL1VR-Ls)cmolsiB265
CmoCh15G002520Cp4.1LG13g08210Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G002520Cp4.1LG01g22500Cucurbita pepo (Zucchini)cmocpeB279
CmoCh15G002520MELO3C022027.2Melon (DHL92) v3.6.1cmomedB271
CmoCh15G002520CsaV3_5G038460Cucumber (Chinese Long) v3cmocucB0348
CmoCh15G002520Cla97C11G211480Watermelon (97103) v2cmowmbB278
CmoCh15G002520Bhi06G000284Wax gourdcmowgoB0374
CmoCh15G002520CsGy5G028730Cucumber (Gy14) v2cgybcmoB584
CmoCh15G002520Carg02225Silver-seed gourdcarcmoB0362
CmoCh15G002520Carg05880Silver-seed gourdcarcmoB0031
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh15G002520CmoCh04G029300Cucurbita moschata (Rifu)cmocmoB261
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G002520Cucumber (Chinese Long) v3cmocucB0320
CmoCh15G002520Cucumber (Chinese Long) v3cmocucB0354
CmoCh15G002520Cucurbita moschata (Rifu)cmocmoB246
CmoCh15G002520Wild cucumber (PI 183967)cmocpiB270
CmoCh15G002520Melon (DHL92) v3.5.1cmomeB253
CmoCh15G002520Melon (DHL92) v3.5.1cmomeB256
CmoCh15G002520Watermelon (Charleston Gray)cmowcgB251
CmoCh15G002520Watermelon (97103) v1cmowmB271