Lsi02G023070 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G023070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ubiquitin carboxyl-terminal hydrolase family protein
Location	chr02 : 29668783 .. 29669991 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCCTCGTCTCATACACTCTTCTCATATCTCCGCAGCTTCAAATCTGCTCAGCCGTCTTTCCTAAGCCGAGAAATCATCTTCCAGATCAGACCCGTTTCGAGTTTGAAGGTAATTTGGCGCAAGGATTACAGATTGGACGAAGCCATCGAGAACGATAAGCGGTACAAGCTATGCGCGCGTGTTGTGAGGGAGGTTCTCAACGAACCAGGGCAGGTGATTCCACTTCGATATCTGGAAAAACGACGAGAGAGATTGCGCCTCAATGTGTCAGTCAACGCGTTTCTGAGTTTCAATCCGGGTTTGTTCGATACTTATTATGATAGAATCAAACCTAAATCTGAACCCGTTTTGTTCTTACGCGCGAGCGATCGACTGAGGGGGTTTCTTGAAGAAGAGAAGAGGATTACGATGGAAAACGAAGGGTTGATCGTTTCGAAATTGTGTAAGTTATTGATGATATCGAAGGATAAAATGCTTAGTGTCGATAAATTAGTGCATGTTAAGAGGGAATTCGGGTTTCCGAACGATTTTTTAGTCAATTTGGTGCCCAAGTACCCTGAATATTTTCAGATAGTTGGGAGTCCGGGAGAGGGAAAATCATTTCTTCAATTGGTTTCTCGAAACCCTGACTTTGCGAAATCAGTGATTGAGAGAAGAGCTGAGGATGAATCCATATCGACCGGCATTCGTATTCGGCCTAATTTCAACTACAAGCTTCCTCCTGGATTCATCTTAAGAAAGGAAATGAGAGAATGGGTTAGAGATTGGTTAGAATTAGACTACATATCGCCATACGAGGACGTGTCCCATTTGGTTCAATCTTCGCCGGAGATGGAGAAGAGAACAGTAGGAGTTTTTCACGAGTTGCTATCACTTTCATTGTTCAAGAGGATTCCAGTGCCGACATTGGGGAAATTTAGTGATGAGTACCGGTTTTCAAATGCATTTTCCAGTGTATTCACAAGGCATTCTGGGATATTCTATATGTCTTTGAAAGTTGGGATTGAGACTGCGATGCTTCGAGAGGCATATGAGGGTGGCCAGTTGATTGATTGTGACCCATTGCTTGTAATAAAAGATAAGTTCATGGAGTTGTTGGAACAAGGATGGAGGGAGAGAGCTGAGCAGCGAAGGCAACGGGCAAAACAACTCAGTAACGACATGGAATTCATGGCTGCAAGGGCTGTTCACTTGAAGGGCTGA

mRNA sequence

ATGCTCTCCTCGTCTCATACACTCTTCTCATATCTCCGCAGCTTCAAATCTGCTCAGCCGTCTTTCCTAAGCCGAGAAATCATCTTCCAGATCAGACCCGTTTCGAGTTTGAAGGTAATTTGGCGCAAGGATTACAGATTGGACGAAGCCATCGAGAACGATAAGCGGTACAAGCTATGCGCGCGTGTTGTGAGGGAGGTTCTCAACGAACCAGGGCAGGTGATTCCACTTCGATATCTGGAAAAACGACGAGAGAGATTGCGCCTCAATGTGTCAGTCAACGCGTTTCTGAGTTTCAATCCGGGTTTGTTCGATACTTATTATGATAGAATCAAACCTAAATCTGAACCCGTTTTGTTCTTACGCGCGAGCGATCGACTGAGGGGGTTTCTTGAAGAAGAGAAGAGGATTACGATGGAAAACGAAGGGTTGATCGTTTCGAAATTGTGTAAGTTATTGATGATATCGAAGGATAAAATGCTTAGTGTCGATAAATTAGTGCATGTTAAGAGGGAATTCGGGTTTCCGAACGATTTTTTAGTCAATTTGGTGCCCAAGTACCCTGAATATTTTCAGATAGTTGGGAGTCCGGGAGAGGGAAAATCATTTCTTCAATTGGTTTCTCGAAACCCTGACTTTGCGAAATCAGTGATTGAGAGAAGAGCTGAGGATGAATCCATATCGACCGGCATTCGTATTCGGCCTAATTTCAACTACAAGCTTCCTCCTGGATTCATCTTAAGAAAGGAAATGAGAGAATGGGTTAGAGATTGGTTAGAATTAGACTACATATCGCCATACGAGGACGTGTCCCATTTGGTTCAATCTTCGCCGGAGATGGAGAAGAGAACAGTAGGAGTTTTTCACGAGTTGCTATCACTTTCATTGTTCAAGAGGATTCCAGTGCCGACATTGGGGAAATTTAGTGATGAGTACCGGTTTTCAAATGCATTTTCCAGTGTATTCACAAGGCATTCTGGGATATTCTATATGTCTTTGAAAGTTGGGATTGAGACTGCGATGCTTCGAGAGGCATATGAGGGTGGCCAGTTGATTGATTGTGACCCATTGCTTGTAATAAAAGATAAGTTCATGGAGTTGTTGGAACAAGGATGGAGGGAGAGAGCTGAGCAGCGAAGGCAACGGGCAAAACAACTCAGTAACGACATGGAATTCATGGCTGCAAGGGCTGTTCACTTGAAGGGCTGA

Coding sequence (CDS)

ATGCTCTCCTCGTCTCATACACTCTTCTCATATCTCCGCAGCTTCAAATCTGCTCAGCCGTCTTTCCTAAGCCGAGAAATCATCTTCCAGATCAGACCCGTTTCGAGTTTGAAGGTAATTTGGCGCAAGGATTACAGATTGGACGAAGCCATCGAGAACGATAAGCGGTACAAGCTATGCGCGCGTGTTGTGAGGGAGGTTCTCAACGAACCAGGGCAGGTGATTCCACTTCGATATCTGGAAAAACGACGAGAGAGATTGCGCCTCAATGTGTCAGTCAACGCGTTTCTGAGTTTCAATCCGGGTTTGTTCGATACTTATTATGATAGAATCAAACCTAAATCTGAACCCGTTTTGTTCTTACGCGCGAGCGATCGACTGAGGGGGTTTCTTGAAGAAGAGAAGAGGATTACGATGGAAAACGAAGGGTTGATCGTTTCGAAATTGTGTAAGTTATTGATGATATCGAAGGATAAAATGCTTAGTGTCGATAAATTAGTGCATGTTAAGAGGGAATTCGGGTTTCCGAACGATTTTTTAGTCAATTTGGTGCCCAAGTACCCTGAATATTTTCAGATAGTTGGGAGTCCGGGAGAGGGAAAATCATTTCTTCAATTGGTTTCTCGAAACCCTGACTTTGCGAAATCAGTGATTGAGAGAAGAGCTGAGGATGAATCCATATCGACCGGCATTCGTATTCGGCCTAATTTCAACTACAAGCTTCCTCCTGGATTCATCTTAAGAAAGGAAATGAGAGAATGGGTTAGAGATTGGTTAGAATTAGACTACATATCGCCATACGAGGACGTGTCCCATTTGGTTCAATCTTCGCCGGAGATGGAGAAGAGAACAGTAGGAGTTTTTCACGAGTTGCTATCACTTTCATTGTTCAAGAGGATTCCAGTGCCGACATTGGGGAAATTTAGTGATGAGTACCGGTTTTCAAATGCATTTTCCAGTGTATTCACAAGGCATTCTGGGATATTCTATATGTCTTTGAAAGTTGGGATTGAGACTGCGATGCTTCGAGAGGCATATGAGGGTGGCCAGTTGATTGATTGTGACCCATTGCTTGTAATAAAAGATAAGTTCATGGAGTTGTTGGAACAAGGATGGAGGGAGAGAGCTGAGCAGCGAAGGCAACGGGCAAAACAACTCAGTAACGACATGGAATTCATGGCTGCAAGGGCTGTTCACTTGAAGGGCTGA

Protein sequence

MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLFLRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFLVNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYKLPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRIPVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVIKDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAARAVHLKG

Homology

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BLAST of Lsi02G023070 vs. Swiss-Prot
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.1e-34
Identity = 94/356 (26.40%), Postives = 176/356 (49.44%), Query Frame = 1


Query: 31  IRPVSSLKVIWRK-----DYRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRE 90
           ++P S    I +K     D+  D  +E +K+ +   +    +L++P   I +  L+    
Sbjct: 31  VKPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLAR 90

Query: 91  RLRLNVSVN---AFLSFNPGLFDTYYDRIKPKSEPVLFLRASDRLRGFLEEEKRITMENE 150
           RL L    +   AFL   P +F+ Y   +    + +L+ R + +    +  E    ++  
Sbjct: 91  RLGLGFKQHEPGAFLLKFPHVFEIYEHPV----QRILYCRLTRKALDQIRHEHEAVLDQI 150

Query: 151 GLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFLVNLVPKYPEYFQIVGSPGEGKS 210
              V++L KL+M+S    + ++ +   + EFG P DF  +++ K+P++F+++        
Sbjct: 151 PDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDK 210

Query: 211 FLQLVSRNPDFAKSVIERRAEDESISTGI---RIRPNFNYKLPPGFILRKEMREWVRDWL 270
           ++++V ++P+ +   IER  E E  + GI    +R +F    PPGF + K  R  V  W 
Sbjct: 211 YIEIVEKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQ 270

Query: 271 ELDYISPYEDVS----HLVQSSPEMEKRTVGVFHELLSLSLFKRIPVPTLGKFSDEYRFS 330
            L Y SPYED+S      +++   +EKR+V   HELLSL++ K+I +  +  F +     
Sbjct: 271 RLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLP 330

Query: 331 NAFSSVFTRHSGIFYMSLKVG---IETAMLREAYEGGQLIDCDPLLVIKDKFMELL 369
                   +H GIFY+S +     + T  LRE Y+ G+L++ + + + + +  EL+
Sbjct: 331 KKLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELV 382

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BLAST of Lsi02G023070 vs. TrEMBL
Match: A0A0A0K559_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392430 PE=4 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 8.9e-206
Identity = 361/402 (89.80%), Postives = 377/402 (93.78%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           M S+ ++L SYLR  KS  P FLS+EII Q RP+SSLKV+WRKDYRLDEAIENDKRYKLC
Sbjct: 1   MFSTPNSLISYLRGIKSHCPCFLSQEIIVQFRPISSLKVVWRKDYRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQVIPLRYLEKRRERLRLNVSV AFL FNPGLFDTYYDRIKPKSEPVLF
Sbjct: 61  ARVVKEVLNEPGQVIPLRYLEKRRERLRLNVSVKAFLGFNPGLFDTYYDRIKPKSEPVLF 120

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           LRASDRLRGFLEEEKRI MENE LIVSKLCKLLM+SKDKMLSVDKLVHVKR+FGFPNDFL
Sbjct: 121 LRASDRLRGFLEEEKRIMMENEELIVSKLCKLLMMSKDKMLSVDKLVHVKRDFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           VNLVPKYPEYFQIVG PGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIR+RPNF+YK
Sbjct: 181 VNLVPKYPEYFQIVGCPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRMRPNFDYK 240

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGFILRKEMREWVRDWLELDYISPYEDVSHL QSSPEMEKRTVGVFHELLSLSLFKRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLAQSSPEMEKRTVGVFHELLSLSLFKRI 300

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           PVP LGKF  EYRFSNAFSSVFTRHSGIFY+SLK GIETAMLREAYEGGQLIDCDPLL I
Sbjct: 301 PVPILGKFGGEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYEGGQLIDCDPLLEI 360

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAARAVHLKG 403
           K+KF+ELLEQGWRERAEQRRQ+A +L  DMEFM ARAVHLKG
Sbjct: 361 KNKFVELLEQGWRERAEQRRQQANELRKDMEFMCARAVHLKG 402

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BLAST of Lsi02G023070 vs. TrEMBL
Match: A0A061DV66_THECC (Ubiquitin carboxyl-terminal hydrolase family protein isoform 1 OS=Theobroma cacao GN=TCM_002907 PE=4 SV=1)

HSP 1 Score: 598.2 bits (1541), Expect = 7.4e-168
Identity = 299/396 (75.51%), Postives = 339/396 (85.61%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           ML  S T+ S +   K    SFL+ +  FQI+P+SSLKVIWRKD +LD+AIENDKRYKLC
Sbjct: 1   MLFKSQTISSSISYLKFDFDSFLNPKFTFQIKPISSLKVIWRKDQKLDQAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQ IPLRYL+KRRERLRLNV V  F++ NPGLFDTYYDRI+PKSE V F
Sbjct: 61  ARVVKEVLNEPGQAIPLRYLDKRRERLRLNVKVKTFINNNPGLFDTYYDRIRPKSERVPF 120

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           LR SD+LR FLEEEKRI  ENE L+VSKLCKLLM+S+ K++SVDKLVHVKREFG PNDFL
Sbjct: 121 LRPSDKLRNFLEEEKRIYSENEELVVSKLCKLLMMSRYKVISVDKLVHVKREFGLPNDFL 180

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           V+LVPKY  YF++ GSPGEG+SFL+LV  NP+FAKSVIE+RAE+ES  TGIR+RPNFNYK
Sbjct: 181 VSLVPKYSNYFRLTGSPGEGQSFLELVEWNPEFAKSVIEQRAEEESRLTGIRVRPNFNYK 240

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LP GF LRKEMREWVRDWLELDYISPYEDVSHL Q+S EMEKR VGVFHELLSLSLFKR+
Sbjct: 241 LPAGFFLRKEMREWVRDWLELDYISPYEDVSHLDQASREMEKRMVGVFHELLSLSLFKRV 300

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           P P LGKF+D+YRFSNAFSSVFTRHSGIFYMSLK GI+TA+LREAY+  QLID DPLL I
Sbjct: 301 PAPILGKFTDDYRFSNAFSSVFTRHSGIFYMSLKGGIKTAVLREAYKDDQLIDKDPLLEI 360

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAAR 397
           KDKF+ELLE+GW+ERAE  R R +Q+  DME MA R
Sbjct: 361 KDKFVELLEEGWQERAELLRLRREQVKKDMEMMAMR 396

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BLAST of Lsi02G023070 vs. TrEMBL
Match: M5W646_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006704mg PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 1.4e-163
Identity = 289/394 (73.35%), Postives = 336/394 (85.28%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           ML  + T+ SYL +  +   S  + E   Q+R +SSLKV+WRKD +LD+AI+NDK+YKLC
Sbjct: 1   MLPKTRTISSYLHNHTTIFTSHTNPETHLQVRFISSLKVVWRKDRKLDQAIKNDKQYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPG+ IPLRYLEKRRERLRLN+ V  FLS NPGLFD YYDRIKPK+EPV F
Sbjct: 61  ARVVKEVLNEPGKAIPLRYLEKRRERLRLNIKVKTFLSRNPGLFDIYYDRIKPKTEPVKF 120

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           LR SDRL+  LEE   I MENE LIVSKLCKLLM+SKDK+LS DKLVHVKREFGFPNDF+
Sbjct: 121 LRISDRLQQILEEGNGIVMENEPLIVSKLCKLLMMSKDKVLSADKLVHVKREFGFPNDFM 180

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           VNLVPKYP+YF+I+G PGE KSFL+LVS NP+FAKSVIERRAE+ES  TGIR+RPNF YK
Sbjct: 181 VNLVPKYPQYFRILGFPGEEKSFLELVSWNPEFAKSVIERRAEEESNLTGIRVRPNFYYK 240

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LP GF L++EMREWVRDW+ELDYISPY+DVS L Q+S EMEKRTVGVFHELLSLS+FKRI
Sbjct: 241 LPSGFFLKREMREWVRDWMELDYISPYKDVSQLDQASQEMEKRTVGVFHELLSLSIFKRI 300

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           PVP LGKFSDEYRFSNAFS+VFTRHSGIFY+SLK GI+TA+LREAY+  ++IDCDPLL I
Sbjct: 301 PVPILGKFSDEYRFSNAFSNVFTRHSGIFYLSLKGGIKTAVLREAYKDDKMIDCDPLLEI 360

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMA 395
           KDKF+ELLE+GWRER EQ + + +++  D E MA
Sbjct: 361 KDKFVELLEEGWRERKEQLQLQMEEVKKDKERMA 394

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BLAST of Lsi02G023070 vs. TrEMBL
Match: A0A0D2PTK3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G187800 PE=4 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 2.1e-162
Identity = 289/396 (72.98%), Postives = 334/396 (84.34%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           +L  S T FS + + K    SFL+ +   Q  P+SSLKV+WRKD+ LD+AIENDKRYKLC
Sbjct: 6   ILFKSQTSFSSISNLKLNFKSFLNPKFTLQFNPISSLKVVWRKDWTLDKAIENDKRYKLC 65

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVV+EVL EPGQ IPLRY++KRR+RLRLNV V  F++ NPGLFDTYYDRI+PKS  V F
Sbjct: 66  ARVVKEVLKEPGQAIPLRYVDKRRKRLRLNVGVKTFINNNPGLFDTYYDRIRPKSNLVPF 125

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           LR S+RLR FLEEEKRI  ENE L+VSKLCKLLM+S+ K++SVDKLVHVKREFG PNDFL
Sbjct: 126 LRPSNRLRNFLEEEKRICDENEELVVSKLCKLLMMSRYKVISVDKLVHVKREFGLPNDFL 185

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           VNLVPKY  YF++ GSPGEG+SFL+LV  NP+FAKSVIE+RAE+ES  TGIR+RPNFNYK
Sbjct: 186 VNLVPKYSNYFRLTGSPGEGQSFLELVEWNPEFAKSVIEQRAEEESQLTGIRVRPNFNYK 245

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LP GF LRKEMREWVRDWLELDYISPYEDVSHL Q+S EMEKR V V HELLSLSL KR+
Sbjct: 246 LPRGFSLRKEMREWVRDWLELDYISPYEDVSHLDQASREMEKRMVAVLHELLSLSLLKRV 305

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           PVP LGKF+++YRFSNAFSS FTRHSGIFYMSLK GI+TA+LREAY+G +LID DPLL I
Sbjct: 306 PVPILGKFTNDYRFSNAFSSAFTRHSGIFYMSLKGGIKTAVLREAYKGDELIDKDPLLGI 365

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAAR 397
           KDKF+ELLE+GWRERAE  R + +Q+  DME MAA+
Sbjct: 366 KDKFVELLEEGWRERAEMLRVQREQVKKDMEMMAAK 401

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BLAST of Lsi02G023070 vs. TrEMBL
Match: G7IEG0_MEDTR (Plant organelle RNA recognition domain protein OS=Medicago truncatula GN=MTR_1g072550 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 3.3e-160
Identity = 275/365 (75.34%), Postives = 322/365 (88.22%), Query Frame = 1


Query: 32  RPVSSLKVIWRKDYRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRERLRLNV 91
           R +SSLKV+WRKD  LD+AIE DKR+K CARVV+EVLNEPGQVIPLRYLEKRR+R+RL V
Sbjct: 26  RLISSLKVVWRKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRLKV 85

Query: 92  SVNAFLSFNPGLFDTYYDRIKPKSEPVLFLRASDRLRGFLEEEKRITMENEGLIVSKLCK 151
            ++ FL+ NP LFD YYDRIKPK+EPV FLR SD L  FL+EEKRI  ENE LIVSKLCK
Sbjct: 86  KIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLCK 145

Query: 152 LLMISKDKMLSVDKLVHVKREFGFPNDFLVNLVPKYPEYFQIVGSPGEGKSFLQLVSRNP 211
           LLM+SKDK++S DKL+HVKREFGFPNDFLV+LVP+YPEYF++ G PGEGKSFL+LV+ NP
Sbjct: 146 LLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNP 205

Query: 212 DFAKSVIERRAEDESISTGIRIRPNFNYKLPPGFILRKEMREWVRDWLELDYISPYEDVS 271
           +FAKSVIERRAE+ES +TGIR+RP+FN KLPPGF+L+KEMREW+RDW+ELDY+SPYEDVS
Sbjct: 206 EFAKSVIERRAEEESRATGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVS 265

Query: 272 HLVQSSPEMEKRTVGVFHELLSLSLFKRIPVPTLGKFSDEYRFSNAFSSVFTRHSGIFYM 331
           HL Q+S EMEKR+VGVFHELLSLSL+KR+PVP LGKF DEYRFSNAFSS FTRHSGIFYM
Sbjct: 266 HLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYM 325

Query: 332 SLKVGIETAMLREAYEGGQLIDCDPLLVIKDKFMELLEQGWRERAEQRRQRAKQLSNDME 391
           SLK GIETAMLREAY+G +LID DPLL IKD+F ELL++GWR RAEQ + + +++  DME
Sbjct: 326 SLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAELLKEGWRLRAEQLKLKQEKIKQDME 385

Query: 392 FMAAR 397
            +A R
Sbjct: 386 LVATR 390

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BLAST of Lsi02G023070 vs. TAIR10
Match: AT3G63090.1 (AT3G63090.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 552.0 bits (1421), Expect = 3.1e-157
Identity = 271/387 (70.03%), Postives = 319/387 (82.43%), Query Frame = 1


Query: 9   FSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLCARVVREVL 68
           +  ++S K A+   L      QIR +SSLKV+W+KD RLDEAIE DKRYKLCARVV+EVL
Sbjct: 10  YEIIKSLKHAKEHSLG----IQIRWISSLKVVWKKDTRLDEAIEQDKRYKLCARVVKEVL 69

Query: 69  NEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLFLRASDRLR 128
           NEPGQVIPLRYLEKRRERLRL     +F+  NP LF+ YYDRIKPKS+PV FLR + RLR
Sbjct: 70  NEPGQVIPLRYLEKRRERLRLTFKAKSFVEMNPSLFEIYYDRIKPKSDPVQFLRPTPRLR 129

Query: 129 GFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFLVNLVPKYP 188
            FL+EE+RI  ENE L+VSKLC+LLM++KDK++S DKLVHVKR+FGFPNDFL+ LV KYP
Sbjct: 130 AFLDEEQRIYSENEPLLVSKLCQLLMMAKDKVISADKLVHVKRDFGFPNDFLMKLVQKYP 189

Query: 189 EYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYKLPPGFILR 248
            YF++ G P EGKSFL+LVS NPDFAKS IE RAEDE++ TG+RIRPN+N KLP GF LR
Sbjct: 190 NYFRLTGLPEEGKSFLELVSWNPDFAKSKIELRAEDETLKTGVRIRPNYNVKLPSGFFLR 249

Query: 249 KEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRIPVPTLGKF 308
           KEMREW RDWLE DYISPYEDVSHL Q+S EMEKRTVGV HELLSLSL KR+PVPTLGKF
Sbjct: 250 KEMREWTRDWLEQDYISPYEDVSHLDQASKEMEKRTVGVVHELLSLSLLKRVPVPTLGKF 309

Query: 309 SDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVIKDKFMELL 368
            DE+RFSNAFSSVFTRHSGIFY+SLK GI+TA+LREAY+  +L+D DPLL IKDKF+ LL
Sbjct: 310 CDEFRFSNAFSSVFTRHSGIFYLSLKGGIKTAVLREAYKDDELVDRDPLLAIKDKFLRLL 369

Query: 369 EQGWRERAEQRRQRAKQLSNDMEFMAA 396
           E+GW+ER ++ + + +Q+  D E M A
Sbjct: 370 EEGWQERKDRLKLQREQVQKDREMMLA 392

[Close]

BLAST of Lsi02G023070 vs. TAIR10
Match: AT2G31290.1 (AT2G31290.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 197.2 bits (500), Expect = 1.9e-50
Identity = 116/341 (34.02%), Postives = 188/341 (55.13%), Query Frame = 1


Query: 42  RKDYRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNP 101
           +KD  L+ A+  +KR+ + +R+   +L  P QV  +++L+K+ + L L      +L   P
Sbjct: 29  KKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQKKFKTLDLQGKALNWLKKYP 88

Query: 102 GLFDTYYDRIKPKSEPVLFLRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKML 161
             F  Y +  +       + R +  +   +EEE+ +    E ++  +L KLLM+S ++ L
Sbjct: 89  CCFHVYLENDE------YYCRLTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLSVNQRL 148

Query: 162 SVDKLVHVKREFGFPNDFLVNLVPKYPEYFQIVGSPGEGKSF-LQLVSRNPDFAKSVIER 221
           +V KL   KR FGFP+D+++ +VPKY + F++V   G   S  ++L+   P+ A S +E 
Sbjct: 149 NVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEA 208

Query: 222 RAEDESISTGIRIRPNFNYKLPPGFILRKEMREWVR--DWLELDYISPYEDVSHLVQSSP 281
            A+           P+F+  LP  +      + W R  ++    YISPYED   LV+ S 
Sbjct: 209 AAKK------CGSEPSFSCSLPSTWT-----KPWERFMEFNAFPYISPYEDHGDLVEGSK 268

Query: 282 EMEKRTVGVFHELLSLSLFKRIPVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIE 341
           E EKR+VG+ HELLSL+L+K++ +  L  F  E+      + +  +H GIFY+  K  + 
Sbjct: 269 ESEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVH 328

Query: 342 TAMLREAYEGGQLIDCDPLLVIKDKFMELLEQGWRERAEQR 380
           T +LRE Y G +LI  DPL+V+KDKF EL++QG  E   +R
Sbjct: 329 TVILREGYNGSELIHKDPLVVVKDKFGELMQQGLYEYNHRR 352

[Close]

BLAST of Lsi02G023070 vs. TAIR10
Match: AT4G01037.1 (AT4G01037.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 188.3 bits (477), Expect = 8.9e-48
Identity = 125/354 (35.31%), Postives = 191/354 (53.95%), Query Frame = 1


Query: 24  SREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKR 83
           SR+    + PV +  V  RK+   D  ++ DK+ KL   + + ++++P +++ LR L K 
Sbjct: 62  SRKTRVVVEPVRAA-VKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKY 121

Query: 84  RERLRLNVSVN--AFLSFNPGLFDTYYDRIKPKSEPVLFLRASDRLRGFLEEEKRITMEN 143
           R  L L       A L   PG+F+     ++  +  + F   S+  R +L+E  RI  E 
Sbjct: 122 RRDLGLKKRRRFIALLRKYPGVFEI----VEEGAYSLRFKMTSEAERLYLDE-MRIRNEL 181

Query: 144 EGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFLVNLVPKYPEYFQIVGSPGEGK 203
           E ++V KL KL+M+S DK + ++K+ H+K + G P +F   +  +YP+YF++V +P  G 
Sbjct: 182 EDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTP-RGP 241

Query: 204 SFLQLVSRNPDFAKSVIE------RRAEDESISTGIRIRPNFN-YKLPPGFILRKEMREW 263
           + L+L   +P+ A S  E      R  E E  +  I   P FN  KLP G  L K     
Sbjct: 242 A-LELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRK 301

Query: 264 VRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRIPVPTLGKFSDEYRF 323
           +  + ++ YISPY+D SHL   + E EK   GV HELLSL+  KR  V  L  F +E+RF
Sbjct: 302 ISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRF 361

Query: 324 SNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVIKDKFMELL 369
           S     +  RH  +FY+SLK   ++  LREAY   +LID DPL ++K+K   L+
Sbjct: 362 SQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALV 407

[Close]

BLAST of Lsi02G023070 vs. TAIR10
Match: AT4G24320.1 (AT4G24320.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 172.9 bits (437), Expect = 3.9e-43
Identity = 106/353 (30.03%), Postives = 174/353 (49.29%), Query Frame = 1


Query: 30  QIRPVSSLKVIWRKDYRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRERLRL 89
           Q R   + +V W  D+ LDEA++ +K  K    +   +++ P + +PL  L   +  + L
Sbjct: 14  QRRTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNL 73

Query: 90  NVSVNAFLSFNPGLFDTYYDRIKPKSEPVLFLRASDRLRGFLEEEKRITME--NEGLIVS 149
           +++  AF    P +F T+    +P     L +R + +     +EE+ I +      + V 
Sbjct: 74  HITAAAFFQKYPSVFTTF----QPSPSHPLHVRLTPQALTLHKEEETIHLSPPQRNVTVQ 133

Query: 150 KLCKLLMISKDKMLSVDKLVHVKREFGFPNDFLVNLVPKYPEYFQIVGSP----GEGKSF 209
           +L K LM++    L +  L   + + G P D++ +L+  YPEYF++        GE    
Sbjct: 134 RLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLTGEKTLA 193

Query: 210 LQLVSRNPDFAKSVIERRA---EDESISTGIRIRPNFNYKLPPGFILRKEMREWVRDWLE 269
           L + SR  +   S +ERR    +   +  G+RIR + N+  P G+ L K ++ WV  W  
Sbjct: 194 LTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNF--PKGYELHKRVKNWVEQWQN 253

Query: 270 LDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRIPVPTLGKFSDEYRFSNAFSS 329
           L YISPYE+  HL   S + EK  V V HELL L + K+     +    +   F   F  
Sbjct: 254 LPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGMRFKK 313

Query: 330 VFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVIKDKFMELLEQGWR 374
               H GIFYMS K+  +T +LREAY    L++  PL+ I+ +++ L+ +  R
Sbjct: 314 ALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSGR 360

[Close]

BLAST of Lsi02G023070 vs. TAIR10
Match: AT5G48040.1 (AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-42
Identity = 109/360 (30.28%), Postives = 185/360 (51.39%), Query Frame = 1


Query: 36  SLKVIWRKDYRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRERLRL--NVSV 95
           ++K+ W KD  LD  +  +K  +    +V  +   P   +P+  L   R +L L   + +
Sbjct: 34  NVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRGQLGLPQELKL 93

Query: 96  NAFLSFNPGLF--DTYYDRIKPKSEPVLFLRASDRLRGFLEEEKRITMENEGLIVSKLCK 155
           +AF+   P +F    Y+D            R +  L     EE  ++  NE  ++ +LCK
Sbjct: 94  SAFIRRYPNIFVEHCYWDSAGTSVPCFGLTRETIDL---YYEEVDVSRVNERDVLVRLCK 153

Query: 156 LLMISKDKMLSVDKLVHVKREFGFPNDFLVNLVPKYPEYFQIVGSPGEGKSFLQLVSRNP 215
           LLM++ ++ LS+  + H++ + G P D+  +L+ K+P+ F +V    +    L+L+  + 
Sbjct: 154 LLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDG-LKLIHWDE 213

Query: 216 DFAKSVIERRAEDESISTGIRIRPNFNYKLPPGFILRKEMREWVRDWLELDYISPYEDVS 275
             A S ++ R +      G   R  F  K   GF L+++  EW+++W  L Y SPY D S
Sbjct: 214 HLAVSQMQLRED-----VGNDERMAFPVKFTRGFGLKRKSIEWLQEWQRLPYTSPYVDAS 273

Query: 276 HLVQSSPEMEKRTVGVFHELLSLSLFKRIPVPTLGKFSDEYRFSNAFSSVFTRHSGIFYM 335
           HL   +   EKR VGVFHELL L++ K+     +      +     F+ VF RH GIFY+
Sbjct: 274 HLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFTKVFERHPGIFYI 333

Query: 336 SLKVGIETAMLREAYEGGQLIDCDPLLVIKDKFMELLEQGWRERAEQRRQRAKQLSNDME 392
           S+K   +T +LREAY+   LI+  PL+ +++KF  ++ +G+ +R+    Q  K +  D+E
Sbjct: 334 SMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMMNEGFLDRSRGLYQ--KSVEADLE 382

[Close]

BLAST of Lsi02G023070 vs. NCBI nr
Match: gi|449436565|ref|XP_004136063.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus])

HSP 1 Score: 724.2 bits (1868), Expect = 1.3e-205
Identity = 361/402 (89.80%), Postives = 377/402 (93.78%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           M S+ ++L SYLR  KS  P FLS+EII Q RP+SSLKV+WRKDYRLDEAIENDKRYKLC
Sbjct: 1   MFSTPNSLISYLRGIKSHCPCFLSQEIIVQFRPISSLKVVWRKDYRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQVIPLRYLEKRRERLRLNVSV AFL FNPGLFDTYYDRIKPKSEPVLF
Sbjct: 61  ARVVKEVLNEPGQVIPLRYLEKRRERLRLNVSVKAFLGFNPGLFDTYYDRIKPKSEPVLF 120

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           LRASDRLRGFLEEEKRI MENE LIVSKLCKLLM+SKDKMLSVDKLVHVKR+FGFPNDFL
Sbjct: 121 LRASDRLRGFLEEEKRIMMENEELIVSKLCKLLMMSKDKMLSVDKLVHVKRDFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           VNLVPKYPEYFQIVG PGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIR+RPNF+YK
Sbjct: 181 VNLVPKYPEYFQIVGCPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRMRPNFDYK 240

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGFILRKEMREWVRDWLELDYISPYEDVSHL QSSPEMEKRTVGVFHELLSLSLFKRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLAQSSPEMEKRTVGVFHELLSLSLFKRI 300

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           PVP LGKF  EYRFSNAFSSVFTRHSGIFY+SLK GIETAMLREAYEGGQLIDCDPLL I
Sbjct: 301 PVPILGKFGGEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYEGGQLIDCDPLLEI 360

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAARAVHLKG 403
           K+KF+ELLEQGWRERAEQRRQ+A +L  DMEFM ARAVHLKG
Sbjct: 361 KNKFVELLEQGWRERAEQRRQQANELRKDMEFMCARAVHLKG 402

[Close]

BLAST of Lsi02G023070 vs. NCBI nr
Match: gi|659101013|ref|XP_008451384.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 713.4 bits (1840), Expect = 2.3e-202
Identity = 355/401 (88.53%), Postives = 374/401 (93.27%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           M S+ H+L SYLR  KS  PSFLS+EII Q RP+SSLKV+WRKDYRLDEAIENDKRYKLC
Sbjct: 1   MFSTPHSLISYLRRIKSPHPSFLSQEIIVQFRPISSLKVVWRKDYRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSV AFL FNPGL DTYYDRIKPKSEPVLF
Sbjct: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVKAFLGFNPGLLDTYYDRIKPKSEPVLF 120

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           LRASDRLRGFLEEEKRI MENE LIVSKLCKLLM+SKDKMLSVDKL+HVKR+FGFPNDFL
Sbjct: 121 LRASDRLRGFLEEEKRIMMENEELIVSKLCKLLMMSKDKMLSVDKLLHVKRDFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           VNLVPKYPEYFQIVGSPGEGKSFLQLV+RNPDFAKSVIERRAEDES STGIR+RPNF+YK
Sbjct: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVTRNPDFAKSVIERRAEDESRSTGIRMRPNFDYK 240

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGFILRKEMREWVRDWLELDYISPYEDVS+L QSSPEMEKRTVGVFHELLSLSL KRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSYLEQSSPEMEKRTVGVFHELLSLSLLKRI 300

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           PVP LGKF DEYRFSNAFSSVFTRHSGIFY+SLK GIETAMLREAY+G QLIDCDPLL I
Sbjct: 301 PVPILGKFGDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYQGDQLIDCDPLLEI 360

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAARAVHLK 402
           K+KF+ELLEQGWRERAEQRR++A +   DMEFM ARAVHLK
Sbjct: 361 KNKFVELLEQGWRERAEQRREQANERRKDMEFMGARAVHLK 401

[Close]

BLAST of Lsi02G023070 vs. NCBI nr
Match: gi|802793199|ref|XP_012092282.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas])

HSP 1 Score: 604.7 bits (1558), Expect = 1.1e-169
Identity = 301/399 (75.44%), Postives = 343/399 (85.96%), Query Frame = 1


Query: 5   SHTLFSYLRSFKSAQ-PSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLCARV 64
           +H++ +Y    K+    SF + +   QI+ +SSLKV+WRKD +LD AIE DKRYK+CARV
Sbjct: 5   THSIRAYFHYLKNPICDSFPNPQFNIQIKYISSLKVVWRKDRKLDFAIEKDKRYKVCARV 64

Query: 65  VREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLFLRA 124
           V+EVLNEPGQVIPLRYLEKRRERLRLN+ V  F++ NPGLFDTYYDRIKPKSE VLFLRA
Sbjct: 65  VKEVLNEPGQVIPLRYLEKRRERLRLNIKVKTFINQNPGLFDTYYDRIKPKSESVLFLRA 124

Query: 125 SDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFLVNL 184
           SDRLR FLEEEKRI +ENEGLIVS+LCKLLM++KDK+LS DKLVHVKREFG PNDFLVNL
Sbjct: 125 SDRLRNFLEEEKRIQLENEGLIVSRLCKLLMMAKDKVLSADKLVHVKREFGLPNDFLVNL 184

Query: 185 VPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYKLPP 244
           VPKYP YF++ G PGEGKSFL+LV  N +FAKS IE+RAE+ES  TGIR+RPNFNYKLPP
Sbjct: 185 VPKYPNYFRLTGCPGEGKSFLELVEWNSEFAKSFIEQRAEEESQLTGIRVRPNFNYKLPP 244

Query: 245 GFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRIPVP 304
           GF LRKEMREWVRDWLELDYISPYEDVSHL QSSPEMEKRTVGVFHELLSLSLFKR+PVP
Sbjct: 245 GFFLRKEMREWVRDWLELDYISPYEDVSHLDQSSPEMEKRTVGVFHELLSLSLFKRVPVP 304

Query: 305 TLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVIKDK 364
            LGKF++EYRFSNAFSSVFTRHSGIFY+SLK GI+TAMLREAY+  +LID DPL  IKDK
Sbjct: 305 ILGKFTEEYRFSNAFSSVFTRHSGIFYISLKGGIKTAMLREAYKDSELIDKDPLHEIKDK 364

Query: 365 FMELLEQGWRERAEQRRQRAKQLSNDMEFMAARAVHLKG 403
           F+ELLE+GW+ERA+Q + + + L NDME MA R   L G
Sbjct: 365 FVELLEEGWQERADQLKTQKEVLKNDMEMMATRNWDLDG 403

[Close]

BLAST of Lsi02G023070 vs. NCBI nr
Match: gi|590713849|ref|XP_007049751.1| (Ubiquitin carboxyl-terminal hydrolase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 598.2 bits (1541), Expect = 1.1e-167
Identity = 299/396 (75.51%), Postives = 339/396 (85.61%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           ML  S T+ S +   K    SFL+ +  FQI+P+SSLKVIWRKD +LD+AIENDKRYKLC
Sbjct: 1   MLFKSQTISSSISYLKFDFDSFLNPKFTFQIKPISSLKVIWRKDQKLDQAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQ IPLRYL+KRRERLRLNV V  F++ NPGLFDTYYDRI+PKSE V F
Sbjct: 61  ARVVKEVLNEPGQAIPLRYLDKRRERLRLNVKVKTFINNNPGLFDTYYDRIRPKSERVPF 120

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           LR SD+LR FLEEEKRI  ENE L+VSKLCKLLM+S+ K++SVDKLVHVKREFG PNDFL
Sbjct: 121 LRPSDKLRNFLEEEKRIYSENEELVVSKLCKLLMMSRYKVISVDKLVHVKREFGLPNDFL 180

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           V+LVPKY  YF++ GSPGEG+SFL+LV  NP+FAKSVIE+RAE+ES  TGIR+RPNFNYK
Sbjct: 181 VSLVPKYSNYFRLTGSPGEGQSFLELVEWNPEFAKSVIEQRAEEESRLTGIRVRPNFNYK 240

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LP GF LRKEMREWVRDWLELDYISPYEDVSHL Q+S EMEKR VGVFHELLSLSLFKR+
Sbjct: 241 LPAGFFLRKEMREWVRDWLELDYISPYEDVSHLDQASREMEKRMVGVFHELLSLSLFKRV 300

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           P P LGKF+D+YRFSNAFSSVFTRHSGIFYMSLK GI+TA+LREAY+  QLID DPLL I
Sbjct: 301 PAPILGKFTDDYRFSNAFSSVFTRHSGIFYMSLKGGIKTAVLREAYKDDQLIDKDPLLEI 360

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAAR 397
           KDKF+ELLE+GW+ERAE  R R +Q+  DME MA R
Sbjct: 361 KDKFVELLEEGWQERAELLRLRREQVKKDMEMMAMR 396

[Close]

BLAST of Lsi02G023070 vs. NCBI nr
Match: gi|1009147756|ref|XP_015891579.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Ziziphus jujuba])

HSP 1 Score: 592.8 bits (1527), Expect = 4.5e-166
Identity = 295/396 (74.49%), Postives = 338/396 (85.35%), Query Frame = 1


Query: 1   MLSSSHTLFSYLRSFKSAQPSFLSREIIFQIRPVSSLKVIWRKDYRLDEAIENDKRYKLC 60
           M   + T+  YL +  +   S  + +I FQI+P+SSLKV+WRKD  LD+AIE DK YKLC
Sbjct: 1   MFLKTRTISCYLHNLNTTFKSHTNPKIDFQIKPISSLKVVWRKDVYLDQAIEEDKEYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVNAFLSFNPGLFDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQVIPLRYLEKRRERLRLNV +  FLS NP LFD YYDRIKPK+EPV F
Sbjct: 61  ARVVKEVLNEPGQVIPLRYLEKRRERLRLNVHIKTFLSRNPCLFDVYYDRIKPKTEPVQF 120

Query: 121 LRASDRLRGFLEEEKRITMENEGLIVSKLCKLLMISKDKMLSVDKLVHVKREFGFPNDFL 180
           +R SDRL+ FLEEEKRITM+NE LIVSKLCKLLM+SKDK++S DKLVHVKREFGFPNDFL
Sbjct: 121 IRISDRLKQFLEEEKRITMQNEPLIVSKLCKLLMMSKDKVISADKLVHVKREFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRIRPNFNYK 240
           VNLVPKY +YF++ G PGEGKSFL+LVS NP+FAKSV+E+RAE+ES  TGIR+RPNFNYK
Sbjct: 181 VNLVPKYSQYFRLAGHPGEGKSFLELVSWNPEFAKSVVEQRAEEESRLTGIRVRPNFNYK 240

Query: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLVQSSPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGF LRKEMREWVRDW+ELDY+SPY+DVSHL Q+SPEMEKRTVGVFHELLSLS+FKR+
Sbjct: 241 LPPGFFLRKEMREWVRDWMELDYVSPYQDVSHLDQASPEMEKRTVGVFHELLSLSIFKRV 300

Query: 301 PVPTLGKFSDEYRFSNAFSSVFTRHSGIFYMSLKVGIETAMLREAYEGGQLIDCDPLLVI 360
           PVP LGKF DEYRFSNAFSSVFTRHSGIFYMSLK GI+TAMLREAY+  QLID DPL  I
Sbjct: 301 PVPILGKFCDEYRFSNAFSSVFTRHSGIFYMSLKGGIKTAMLREAYKDDQLIDRDPLHEI 360

Query: 361 KDKFMELLEQGWRERAEQRRQRAKQLSNDMEFMAAR 397
           KDKF+ELLE GWR+  +Q + + + +  DME MA R
Sbjct: 361 KDKFVELLE-GWRQSNKQLKLQKEDI-KDMELMAIR 394

The following BLAST results are available for this feature:

BLAST of Lsi02G023070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPD1_ARATH	4.1e-34	26.40	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1	[more]

BLAST of Lsi02G023070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K559_CUCSA	8.9e-206	89.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392430 PE=4 SV=1	[more]
A0A061DV66_THECC	7.4e-168	75.51	Ubiquitin carboxyl-terminal hydrolase family protein isoform 1 OS=Theobroma caca...	[more]
M5W646_PRUPE	1.4e-163	73.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006704mg PE=4 SV=1	[more]
A0A0D2PTK3_GOSRA	2.1e-162	72.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G187800 PE=4 SV=1	[more]
G7IEG0_MEDTR	3.3e-160	75.34	Plant organelle RNA recognition domain protein OS=Medicago truncatula GN=MTR_1g0...	[more]

BLAST of Lsi02G023070 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63090.1	3.1e-157	70.03	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G31290.1	1.9e-50	34.02	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G01037.1	8.9e-48	35.31	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	3.9e-43	30.03	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	1.9e-42	30.28	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of Lsi02G023070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436565\|ref\|XP_004136063.1\|	1.3e-205	89.80	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus]	[more]
gi\|659101013\|ref\|XP_008451384.1\|	2.3e-202	88.53	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]	[more]
gi\|802793199\|ref\|XP_012092282.1\|	1.1e-169	75.44	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]	[more]
gi\|590713849\|ref\|XP_007049751.1\|	1.1e-167	75.51	Ubiquitin carboxyl-terminal hydrolase family protein isoform 1 [Theobroma cacao]	[more]
gi\|1009147756\|ref\|XP_015891579.1\|	4.5e-166	74.49	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021099	PORR_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023070.1	Lsi02G023070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 43..372 score: 1.0E
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 21..394 score: 1.2E
None	No IPR available	PANTHER	PTHR31476:SF3	SUBFAMILY NOT NAMED	coord: 21..394 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G023070	Csa7G392430	Cucumber (Chinese Long) v2	culsiB509
Lsi02G023070	CSPI07G16870	Wild cucumber (PI 183967)	cpilsiB523
Lsi02G023070	Cucsa.084980	Cucumber (Gy14) v1	cgylsiB091
Lsi02G023070	CmaCh17G011630	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G023070	CmoCh17G011380	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G023070	Cla014747	Watermelon (97103) v1	lsiwmB175
Lsi02G023070	MELO3C015855	Melon (DHL92) v3.5.1	lsimeB186
Lsi02G023070	MELO3C015855.2	Melon (DHL92) v3.6.1	lsimedB195
Lsi02G023070	Cla97C09G169490	Watermelon (97103) v2	lsiwmbB212
Lsi02G023070	Bhi09G000847	Wax gourd	lsiwgoB282
Lsi02G023070	Cp4.1LG12g11800	Cucurbita pepo (Zucchini)	cpelsiB113
Lsi02G023070	Carg07235	Silver-seed gourd	carlsiB098
Lsi02G023070	CsaV3_7G028630	Cucumber (Chinese Long) v3	cuclsiB543

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G023070	Silver-seed gourd	carlsiB782
Lsi02G023070	Cucumber (Chinese Long) v3	cuclsiB189
Lsi02G023070	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G023070	Watermelon (97103) v2	lsiwmbB204
Lsi02G023070	Wax gourd	lsiwgoB224
Lsi02G023070	Bottle gourd (USVL1VR-Ls)	lsilsiB108
Lsi02G023070	Cucumber (Gy14) v1	cgylsiB090
Lsi02G023070	Cucurbita maxima (Rimu)	cmalsiB749
Lsi02G023070	Cucurbita maxima (Rimu)	cmalsiB822
Lsi02G023070	Cucurbita moschata (Rifu)	cmolsiB742
Lsi02G023070	Cucurbita moschata (Rifu)	cmolsiB809
Lsi02G023070	Cucurbita pepo (Zucchini)	cpelsiB498
Lsi02G023070	Cucurbita pepo (Zucchini)	cpelsiB262
Lsi02G023070	Cucurbita pepo (Zucchini)	cpelsiB704
Lsi02G023070	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G023070	Cucumber (Chinese Long) v2	culsiB503
Lsi02G023070	Melon (DHL92) v3.5.1	lsimeB222
Lsi02G023070	Watermelon (97103) v1	lsiwmB190
Lsi02G023070	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G023070	Watermelon (Charleston Gray)	lsiwcgB208
Lsi02G023070	Cucumber (Gy14) v2	cgyblsiB157
Lsi02G023070	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G023070	Cucumber (Gy14) v2	cgyblsiB477
Lsi02G023070	Melon (DHL92) v3.6.1	lsimedB232