Carg07235 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07235
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	Cucurbita_argyrosperma_scaffold_017 : 830544 .. 831743 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCTAAGCCCTATGCGCTCTTCTCGTATCTGCGCAGCTTCAAATCTGCTCAGTCTTGTTTCGTAAGGCGAAAATTCGTCTTACAGATCAGAGCCGTTTCGAGTTTGAAGGTTATTTGGCGCAAGGATTCCAGATTGGACGAAGCCATTGAGAACGACAAGCGGTACAAGCTATGTGCGCGGGTTGTGAGGGAAGTTCTCAACGAGCCTGGACAGGTGATTCCGCTTCGATATCTGGAGAAACGACGGCAGAGATTGCGTCTCAATGTGTCAATCAAGACGTTTATGAGTTTTAATCCGGGTTTGTTGGATACTTACTATGATAGAATCAAACCTAAATCTGAACCCGTCCTGTTCTTACGCCCGAGCGACCGGCTTAGGGGGTTTCTCGAAGAGGAGAAGAGGATTACGATGGAAAACGAAGCGTTGATCGTTTCGAAATTGTGCAAGTTATTGATGATATCGAAGGATAAAGTGCTCAGTGTCGATAAATTAGTGCAGGTTAAGCGGGAATTCGGGTTTCCAAATGATTTTTTGGTCAATTTGGTGCCGAAGTACCCTGAATATTTTCAGATAATTGGTAGTCCTGGAGACGAAAAATCGTTTCTTCAATTGGTTTCTCGAAACCCTGACTTCGCGAAATCAGTGATTGAGAGAAGAGCCGAGGACGAATCCATATCGACAGGCATTGATATTCGACCCAATTTCAACTACAATCTTCCTCCTGGATTCTTCTTAAGAAAGGAAATGAGAGAATGGGTTAGAGATTGGTTAGAACTAGATTACATATCGCCGTACGAGGACGTGTCCCATTTGGCCCAAGCTTCGCCGGAGATGGAGAAGAGAACAGTAGGAGTTTTTCACGAGTTGCTATCACTTTCATTGTTCAAGAGGATTCCAGTGCCGATATTGGGAAAATTTAGTGATGAGTACCGGTTTTCAAATGCATTTTCCAGTGTGTTCACAAGGCATTCTGGGATATTTTATTTGTCTTTGAAAGGTGGGATTGAGACTGCGATGCTTCGAGAGGCATATAAGGGTAGCCAGTTGATTGATTGTGACCCATTGCTTGAAATAAAAGATAAGTTCGTGGAGTTGTTGGAAGAAGGATGGAGGGAGAGAGCTGAGCAGCGAAGGCAGCAGGCTAAACAAGTGAGGAACGACATGGAATTCATGGCTGCAAGAGCTGACGCTTAA

mRNA sequence

ATGCTCTCTAAGCCCTATGCGCTCTTCTCGTATCTGCGCAGCTTCAAATCTGCTCAGTCTTGTTTCGTAAGGCGAAAATTCGTCTTACAGATCAGAGCCGTTTCGAGTTTGAAGGTTATTTGGCGCAAGGATTCCAGATTGGACGAAGCCATTGAGAACGACAAGCGGTACAAGCTATGTGCGCGGGTTGTGAGGGAAGTTCTCAACGAGCCTGGACAGGTGATTCCGCTTCGATATCTGGAGAAACGACGGCAGAGATTGCGTCTCAATGTGTCAATCAAGACGTTTATGAGTTTTAATCCGGGTTTGTTGGATACTTACTATGATAGAATCAAACCTAAATCTGAACCCGTCCTGTTCTTACGCCCGAGCGACCGGCTTAGGGGGTTTCTCGAAGAGGAGAAGAGGATTACGATGGAAAACGAAGCGTTGATCGTTTCGAAATTGTGCAAGTTATTGATGATATCGAAGGATAAAGTGCTCAGTGTCGATAAATTAGTGCAGGTTAAGCGGGAATTCGGGTTTCCAAATGATTTTTTGGTCAATTTGGTGCCGAAGTACCCTGAATATTTTCAGATAATTGGTAGTCCTGGAGACGAAAAATCGTTTCTTCAATTGGTTTCTCGAAACCCTGACTTCGCGAAATCAGTGATTGAGAGAAGAGCCGAGGACGAATCCATATCGACAGGCATTGATATTCGACCCAATTTCAACTACAATCTTCCTCCTGGATTCTTCTTAAGAAAGGAAATGAGAGAATGGGTTAGAGATTGGTTAGAACTAGATTACATATCGCCGTACGAGGACGTGTCCCATTTGGCCCAAGCTTCGCCGGAGATGGAGAAGAGAACAGTAGGAGTTTTTCACGAGTTGCTATCACTTTCATTGTTCAAGAGGATTCCAGTGCCGATATTGGGAAAATTTAGTGATGAGTACCGGTTTTCAAATGCATTTTCCAGTGTGTTCACAAGGCATTCTGGGATATTTTATTTGTCTTTGAAAGGTGGGATTGAGACTGCGATGCTTCGAGAGGCATATAAGGGTAGCCAGTTGATTGATTGTGACCCATTGCTTGAAATAAAAGATAAGTTCGTGGAGTTGTTGGAAGAAGGATGGAGGGAGAGAGCTGAGCAGCGAAGGCAGCAGGCTAAACAAGTGAGGAACGACATGGAATTCATGGCTGCAAGAGCTGACGCTTAA

Coding sequence (CDS)

ATGCTCTCTAAGCCCTATGCGCTCTTCTCGTATCTGCGCAGCTTCAAATCTGCTCAGTCTTGTTTCGTAAGGCGAAAATTCGTCTTACAGATCAGAGCCGTTTCGAGTTTGAAGGTTATTTGGCGCAAGGATTCCAGATTGGACGAAGCCATTGAGAACGACAAGCGGTACAAGCTATGTGCGCGGGTTGTGAGGGAAGTTCTCAACGAGCCTGGACAGGTGATTCCGCTTCGATATCTGGAGAAACGACGGCAGAGATTGCGTCTCAATGTGTCAATCAAGACGTTTATGAGTTTTAATCCGGGTTTGTTGGATACTTACTATGATAGAATCAAACCTAAATCTGAACCCGTCCTGTTCTTACGCCCGAGCGACCGGCTTAGGGGGTTTCTCGAAGAGGAGAAGAGGATTACGATGGAAAACGAAGCGTTGATCGTTTCGAAATTGTGCAAGTTATTGATGATATCGAAGGATAAAGTGCTCAGTGTCGATAAATTAGTGCAGGTTAAGCGGGAATTCGGGTTTCCAAATGATTTTTTGGTCAATTTGGTGCCGAAGTACCCTGAATATTTTCAGATAATTGGTAGTCCTGGAGACGAAAAATCGTTTCTTCAATTGGTTTCTCGAAACCCTGACTTCGCGAAATCAGTGATTGAGAGAAGAGCCGAGGACGAATCCATATCGACAGGCATTGATATTCGACCCAATTTCAACTACAATCTTCCTCCTGGATTCTTCTTAAGAAAGGAAATGAGAGAATGGGTTAGAGATTGGTTAGAACTAGATTACATATCGCCGTACGAGGACGTGTCCCATTTGGCCCAAGCTTCGCCGGAGATGGAGAAGAGAACAGTAGGAGTTTTTCACGAGTTGCTATCACTTTCATTGTTCAAGAGGATTCCAGTGCCGATATTGGGAAAATTTAGTGATGAGTACCGGTTTTCAAATGCATTTTCCAGTGTGTTCACAAGGCATTCTGGGATATTTTATTTGTCTTTGAAAGGTGGGATTGAGACTGCGATGCTTCGAGAGGCATATAAGGGTAGCCAGTTGATTGATTGTGACCCATTGCTTGAAATAAAAGATAAGTTCGTGGAGTTGTTGGAAGAAGGATGGAGGGAGAGAGCTGAGCAGCGAAGGCAGCAGGCTAAACAAGTGAGGAACGACATGGAATTCATGGCTGCAAGAGCTGACGCTTAA

Protein sequence

MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLFLRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYNLPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARADA

Homology

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BLAST of Carg07235 vs. NCBI nr
Match: XP_022953521.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022953522.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022953524.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022953525.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022953526.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata])

HSP 1 Score: 783.5 bits (2022), Expect = 3.4e-223
Identity = 396/399 (99.25%), Postives = 398/399 (99.75%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           MLS PYALFSYLRSFKSAQSCFVRRKFVLQIR+VSSLKVIWRKDSRLDEAIENDKRYKLC
Sbjct: 1   MLSTPYALFSYLRSFKSAQSCFVRRKFVLQIRSVSSLKVIWRKDSRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLL+TYYDRIKPKSEPVLF
Sbjct: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLNTYYDRIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL
Sbjct: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN
Sbjct: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI
Sbjct: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI
Sbjct: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARADA 400
           KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARADA
Sbjct: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARADA 399

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BLAST of Carg07235 vs. NCBI nr
Match: XP_022992526.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022992527.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022992528.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022992529.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022992530.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022992531.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima])

HSP 1 Score: 766.9 bits (1979), Expect = 3.3e-218
Identity = 388/399 (97.24%), Postives = 393/399 (98.50%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           MLS PYALFSYLRSFKSAQS FVRRKF LQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC
Sbjct: 1   MLSTPYALFSYLRSFKSAQSSFVRRKFFLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLL+TY DRIKPKSEPVLF
Sbjct: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLNTYCDRIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LRPSDRLRGFLEEEKRITMENEAL+VSKLCKLLMISKDK+LSVDKLV VKREFGFPNDFL
Sbjct: 121 LRPSDRLRGFLEEEKRITMENEALLVSKLCKLLMISKDKLLSVDKLVHVKREFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNP+FAKSVIERRAEDESISTGI IRPNFNYN
Sbjct: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPNFAKSVIERRAEDESISTGIQIRPNFNYN 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVG+FHELLSLSLFKRI
Sbjct: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGIFHELLSLSLFKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI
Sbjct: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARADA 400
           KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARADA
Sbjct: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARADA 399

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BLAST of Carg07235 vs. NCBI nr
Match: XP_004136063.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN44870.1 hypothetical protein Csa_7G392430 [Cucumis sativus])

HSP 1 Score: 687.6 bits (1773), Expect = 2.6e-194
Identity = 340/397 (85.64%), Postives = 365/397 (91.94%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           M S P +L SYLR  KS   CF+ ++ ++Q R +SSLKV+WRKD RLDEAIENDKRYKLC
Sbjct: 1   MFSTPNSLISYLRGIKSHCPCFLSQEIIVQFRPISSLKVVWRKDYRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQVIPLRYLEKRR+RLRLNVS+K F+ FNPGL DTYYDRIKPKSEPVLF
Sbjct: 61  ARVVKEVLNEPGQVIPLRYLEKRRERLRLNVSVKAFLGFNPGLFDTYYDRIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LR SDRLRGFLEEEKRI MENE LIVSKLCKLLM+SKDK+LSVDKLV VKR+FGFPNDFL
Sbjct: 121 LRASDRLRGFLEEEKRIMMENEELIVSKLCKLLMMSKDKMLSVDKLVHVKRDFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYPEYFQI+G PG+ KSFLQLVSRNPDFAKSVIERRAEDESISTGI +RPNF+Y 
Sbjct: 181 VNLVPKYPEYFQIVGCPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRMRPNFDYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGF LRKEMREWVRDWLELDYISPYEDVSHLAQ+SPEMEKRTVGVFHELLSLSLFKRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLAQSSPEMEKRTVGVFHELLSLSLFKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKF  EYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAY+G QLIDCDPLLEI
Sbjct: 301 PVPILGKFGGEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYEGGQLIDCDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARA 398
           K+KFVELLE+GWRERAEQRRQQA ++R DMEFM ARA
Sbjct: 361 KNKFVELLEQGWRERAEQRRQQANELRKDMEFMCARA 397

[Close]

BLAST of Carg07235 vs. NCBI nr
Match: XP_022150285.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia])

HSP 1 Score: 667.2 bits (1720), Expect = 3.6e-188
Identity = 335/397 (84.38%), Postives = 360/397 (90.68%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           ML  P  LFSYLRSF+SAQS  +  + + QIR++SSLKV+WRKD RLDEAIE+DKRYKLC
Sbjct: 1   MLFTPRTLFSYLRSFRSAQSSSISPEIIFQIRSISSLKVVWRKDPRLDEAIESDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVVREVLNEPGQVIPLRYLEKRR RLRLNV I+TFM+ NPGL DTYYDRIKPKSEPVLF
Sbjct: 61  ARVVREVLNEPGQVIPLRYLEKRRPRLRLNVKIETFMNRNPGLFDTYYDRIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           +R SDRLR FL EE+RIT ENEALIVSKLCKLLMISKDKVLSVDKLV VKREFGFPNDFL
Sbjct: 121 IRASDRLREFLXEEERITTENEALIVSKLCKLLMISKDKVLSVDKLVHVKREFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYPEYFQ++GSPG+ KSFLQLVSRNP+F+KSVIE RA+DES  TGI +RPNF+Y 
Sbjct: 181 VNLVPKYPEYFQLVGSPGEGKSFLQLVSRNPNFSKSVIETRADDESRLTGIRVRPNFDYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGF LRKEMREWVRDWLELDYISPYEDV+HLAQASPEMEKRTV VFHELLSLSL KRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVTHLAQASPEMEKRTVAVFHELLSLSLHKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKFSDEYRFSNAFSS+FTRHSGIFY+SLKGGI T MLREAYKG QLID DPLLEI
Sbjct: 301 PVPILGKFSDEYRFSNAFSSIFTRHSGIFYMSLKGGIGTGMLREAYKGDQLIDRDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARA 398
           KDKFVELLEEGWRERAE RRQQ KQ++ DME MAARA
Sbjct: 361 KDKFVELLEEGWRERAEWRRQQTKQLKMDMELMAARA 397

[Close]

BLAST of Carg07235 vs. NCBI nr
Match: XP_008451384.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 662.9 bits (1709), Expect = 6.8e-187
Identity = 329/397 (82.87%), Postives = 355/397 (89.42%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           M S P++L SYLR  KS    F+ ++ ++Q R +SSLKV+WRKD RLDEAIENDKRYKLC
Sbjct: 1   MFSTPHSLISYLRRIKSPHPSFLSQEIIVQFRPISSLKVVWRKDYRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVVREVLNEPGQVIPLRYLEKRR+RLRLNVS+K F+ FNPGLLDTYYDRIKPKSEPVLF
Sbjct: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVKAFLGFNPGLLDTYYDRIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LR SDRLRGFLEEEKRI MENE LIVSKLCKLLM+SKDK          KR+FGFPNDFL
Sbjct: 121 LRASDRLRGFLEEEKRIMMENEELIVSKLCKLLMMSKDKXXXXXXXXXXKRDFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYPEYFQI+GSPG+ KSFLQLV+RNPDFAKSVIERRAEDES STGI +RPNF+Y 
Sbjct: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVTRNPDFAKSVIERRAEDESRSTGIRMRPNFDYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGF LRKEMREWVRDWLELDYISPYEDVS+L Q+SPEMEKRTVGVFHELLSLSL KRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSYLEQSSPEMEKRTVGVFHELLSLSLLKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKF DEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAY+G QLIDCDPLLEI
Sbjct: 301 PVPILGKFGDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYQGDQLIDCDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARA 398
           K+KFVELLE+GWRERAEQRR+QA + R DMEFM ARA
Sbjct: 361 KNKFVELLEQGWRERAEQRREQANERRKDMEFMGARA 397

[Close]

BLAST of Carg07235 vs. TAIR10
Match: AT3G63090.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 552.0 bits (1421), Expect = 3.1e-157
Identity = 273/387 (70.54%), Postives = 319/387 (82.43%), Query Frame = 0


Query: 9   FSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLCARVVREVL 68
           +  ++S K A+         +QIR +SSLKV+W+KD+RLDEAIE DKRYKLCARVV+EVL
Sbjct: 10  YEIIKSLKHAK----EHSLGIQIRWISSLKVVWKKDTRLDEAIEQDKRYKLCARVVKEVL 69

Query: 69  NEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLFLRPSDRLR 128
           NEPGQVIPLRYLEKRR+RLRL    K+F+  NP L + YYDRIKPKS+PV FLRP+ RLR
Sbjct: 70  NEPGQVIPLRYLEKRRERLRLTFKAKSFVEMNPSLFEIYYDRIKPKSDPVQFLRPTPRLR 129

Query: 129 GFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFLVNLVPKYP 188
            FL+EE+RI  ENE L+VSKLC+LLM++KDKV+S DKLV VKR+FGFPNDFL+ LV KYP
Sbjct: 130 AFLDEEQRIYSENEPLLVSKLCQLLMMAKDKVISADKLVHVKRDFGFPNDFLMKLVQKYP 189

Query: 189 EYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYNLPPGFFLR 248
            YF++ G P + KSFL+LVS NPDFAKS IE RAEDE++ TG+ IRPN+N  LP GFFLR
Sbjct: 190 NYFRLTGLPEEGKSFLELVSWNPDFAKSKIELRAEDETLKTGVRIRPNYNVKLPSGFFLR 249

Query: 249 KEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKF 308
           KEMREW RDWLE DYISPYEDVSHL QAS EMEKRTVGV HELLSLSL KR+PVP LGKF
Sbjct: 250 KEMREWTRDWLEQDYISPYEDVSHLDQASKEMEKRTVGVVHELLSLSLLKRVPVPTLGKF 309

Query: 309 SDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELL 368
            DE+RFSNAFSSVFTRHSGIFYLSLKGGI+TA+LREAYK  +L+D DPLL IKDKF+ LL
Sbjct: 310 CDEFRFSNAFSSVFTRHSGIFYLSLKGGIKTAVLREAYKDDELVDRDPLLAIKDKFLRLL 369

Query: 369 EEGWRERAEQRRQQAKQVRNDMEFMAA 396
           EEGW+ER ++ + Q +QV+ D E M A
Sbjct: 370 EEGWQERKDRLKLQREQVQKDREMMLA 392

[Close]

BLAST of Carg07235 vs. TAIR10
Match: AT2G31290.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 189.1 bits (479), Expect = 5.2e-48
Identity = 111/341 (32.55%), Postives = 189/341 (55.43%), Query Frame = 0


Query: 42  RKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNP 101
           +KD  L+ A+  +KR+ + +R+   +L  P QV  +++L+K+ + L L      ++   P
Sbjct: 29  KKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQKKFKTLDLQGKALNWLKKYP 88

Query: 102 GLLDTYYDRIKPKSEPVLFLRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVL 161
                Y +  +       + R +  +   +EEE+ +    E ++  +L KLLM+S ++ L
Sbjct: 89  CCFHVYLENDE------YYCRLTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLSVNQRL 148

Query: 162 SVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSF-LQLVSRNPDFAKSVIER 221
           +V KL + KR FGFP+D+++ +VPKY + F+++   G + S  ++L+   P+ A S +E 
Sbjct: 149 NVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEA 208

Query: 222 RAEDESISTGIDIRPNFNYNLPPGFFLRKEMREWVR--DWLELDYISPYEDVSHLAQASP 281
            A+           P+F+ +LP  +      + W R  ++    YISPYED   L + S 
Sbjct: 209 AAKK------CGSEPSFSCSLPSTW-----TKPWERFMEFNAFPYISPYEDHGDLVEGSK 268

Query: 282 EMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIE 341
           E EKR+VG+ HELLSL+L+K++ +  L  F  E+      + +  +H GIFY+  K  + 
Sbjct: 269 ESEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVH 328

Query: 342 TAMLREAYKGSQLIDCDPLLEIKDKFVELLEEGWRERAEQR 380
           T +LRE Y GS+LI  DPL+ +KDKF EL+++G  E   +R
Sbjct: 329 TVILREGYNGSELIHKDPLVVVKDKFGELMQQGLYEYNHRR 352

[Close]

BLAST of Carg07235 vs. TAIR10
Match: AT4G01037.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 182.2 bits (461), Expect = 6.4e-46
Identity = 116/336 (34.52%), Postives = 183/336 (54.46%), Query Frame = 0


Query: 42  RKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIK--TFMSF 101
           RK+   D  ++ DK+ KL   + + ++++P +++ LR L K R+ L L    +    +  
Sbjct: 79  RKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRK 138

Query: 102 NPGLLDTYYDRIKPKSEPVLFLRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDK 161
            PG+    ++ ++  +  + F   S+  R +L +E RI  E E ++V KL KL+M+S DK
Sbjct: 139 YPGV----FEIVEEGAYSLRFKMTSEAERLYL-DEMRIRNELEDVLVVKLRKLVMMSIDK 198

Query: 162 VLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIE 221
            + ++K+  +K + G P +F   +  +YP+YF+++ +P      L+L   +P+ A S  E
Sbjct: 199 RILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTP--RGPALELTHWDPELAVSAAE 258

Query: 222 ------RRAEDESISTGIDIRPNFN-YNLPPGFFLRKEMREWVRDWLELDYISPYEDVSH 281
                 R  E E  +  ID  P FN   LP G  L K     +  + ++ YISPY+D SH
Sbjct: 259 LSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSH 318

Query: 282 LAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSNAFSSVFTRHSGIFYLS 341
           L   + E EK   GV HELLSL+  KR  V  L  F +E+RFS     +  RH  +FY+S
Sbjct: 319 LRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVS 378

Query: 342 LKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELL 369
           LKG  ++  LREAY+ S+LID DPL  +K+K   L+
Sbjct: 379 LKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALV 407

[Close]

BLAST of Carg07235 vs. TAIR10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 169.1 bits (427), Expect = 5.6e-42
Identity = 115/376 (30.59%), Postives = 188/376 (50.00%), Query Frame = 0


Query: 21  CFVRRKFVLQIR-AVSSLKVIWRKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRY 80
           C  R  F  Q R  + ++K+ W KD  LD  +  +K  +    +V  +   P   +P+  
Sbjct: 18  CRERFDFFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIFK 77

Query: 81  LEKRRQRLRL--NVSIKTFMSFNPGLL--DTYYDRIKPKSEPVLFLRPSDRLRGFLEEEK 140
           L   R +L L   + +  F+   P +     Y+D     S P   L  +        EE 
Sbjct: 78  LLPHRGQLGLPQELKLSAFIRRYPNIFVEHCYWDS-AGTSVPCFGL--TRETIDLYYEEV 137

Query: 141 RITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIG 200
            ++  NE  ++ +LCKLLM++ ++ LS+  +  ++ + G P D+  +L+ K+P+ F ++ 
Sbjct: 138 DVSRVNERDVLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVK 197

Query: 201 SPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYNLPPGFFLRKEMREWV 260
              D    L+L+  +   A S ++ R +      G D R  F      GF L+++  EW+
Sbjct: 198 LSSDLDG-LKLIHWDEHLAVSQMQLRED-----VGNDERMAFPVKFTRGFGLKRKSIEWL 257

Query: 261 RDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFS 320
           ++W  L Y SPY D SHL   +   EKR VGVFHELL L++ K+     +      +   
Sbjct: 258 QEWQRLPYTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALP 317

Query: 321 NAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELLEEGWRER 380
             F+ VF RH GIFY+S+K   +T +LREAY    LI+  PL+E+++KF  ++ EG+ +R
Sbjct: 318 QKFTKVFERHPGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMMNEGFLDR 377

Query: 381 AEQRRQQAKQVRNDME 392
           +  R    K V  D+E
Sbjct: 378 S--RGLYQKSVEADLE 382

[Close]

BLAST of Carg07235 vs. TAIR10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 165.6 bits (418), Expect = 6.2e-41
Identity = 106/354 (29.94%), Postives = 182/354 (51.41%), Query Frame = 0


Query: 33  AVSSLKVIWRKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRLRLNVS 92
           A++ +++ W K+  LD  I+ +   K    +   +   P   +  + +   ++ L L V 
Sbjct: 27  AMTKVRLKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGFLTAKSVADWQKLLGLTVP 86

Query: 93  IKTFMSFNPGLLDTYYDRIKPKSEPVLFLRPSDRLRGFLEEEKRITMENEALIVSKLCKL 152
           +  F+   P L    +   +  S P   L  +D       +E+ I   +EA  V +LC++
Sbjct: 87  VLRFLRRYPTLFHE-FPHARYASLPCFKL--TDTALMLDSQEEIIHQSHEADTVERLCRV 146

Query: 153 LMISKDKVLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPD 212
           LM+ + K +S+  L  +K + G P+++   LV KYP++F  +    +    L+LV    +
Sbjct: 147 LMMMRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFV-KASNGNPCLKLVKWRDE 206

Query: 213 FAKSVIERRAEDESISTGIDIR----------PNFNYNLPPGFFLRKEMREWVRDWLELD 272
           FA S +++R ED  +S G + R            F  + P G+  +K+++ W+ ++ +L 
Sbjct: 207 FAFSALQKRNEDNDVS-GEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLP 266

Query: 273 YISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSNAFSSVF 332
           YISPY+D S++   S  MEKR V V HELLSL++ K+     L     E    + F+ +F
Sbjct: 267 YISPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLF 326

Query: 333 TRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELLEEGWRERA 377
           TR+ GIFYLSLK    T +L+E Y+  +L+D  PL  ++DKF  ++  G+  RA
Sbjct: 327 TRYPGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVMRTGFLYRA 375

[Close]

BLAST of Carg07235 vs. Swiss-Prot
Match: sp|A0MFS5|WTF1_ARATH (Protein WHAT'S THIS FACTOR 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-44
Identity = 116/336 (34.52%), Postives = 183/336 (54.46%), Query Frame = 0


Query: 42  RKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIK--TFMSF 101
           RK+   D  ++ DK+ KL   + + ++++P +++ LR L K R+ L L    +    +  
Sbjct: 79  RKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRK 138

Query: 102 NPGLLDTYYDRIKPKSEPVLFLRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDK 161
            PG+    ++ ++  +  + F   S+  R +L +E RI  E E ++V KL KL+M+S DK
Sbjct: 139 YPGV----FEIVEEGAYSLRFKMTSEAERLYL-DEMRIRNELEDVLVVKLRKLVMMSIDK 198

Query: 162 VLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIE 221
            + ++K+  +K + G P +F   +  +YP+YF+++ +P      L+L   +P+ A S  E
Sbjct: 199 RILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTP--RGPALELTHWDPELAVSAAE 258

Query: 222 ------RRAEDESISTGIDIRPNFN-YNLPPGFFLRKEMREWVRDWLELDYISPYEDVSH 281
                 R  E E  +  ID  P FN   LP G  L K     +  + ++ YISPY+D SH
Sbjct: 259 LSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSH 318

Query: 282 LAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSNAFSSVFTRHSGIFYLS 341
           L   + E EK   GV HELLSL+  KR  V  L  F +E+RFS     +  RH  +FY+S
Sbjct: 319 LRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVS 378

Query: 342 LKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELL 369
           LKG  ++  LREAY+ S+LID DPL  +K+K   L+
Sbjct: 379 LKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALV 407

[Close]

BLAST of Carg07235 vs. Swiss-Prot
Match: sp|Q65XL5|WTF1_ORYSJ (Protein WHAT'S THIS FACTOR 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.2e-43
Identity = 118/352 (33.52%), Postives = 183/352 (51.99%), Query Frame = 0


Query: 30  QIRAVSSLKVIWRKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRL-- 89
           ++  V+   V  RK+   D  I+ DK+ KL  ++   +++ P +V+ LR L + R+ L  
Sbjct: 52  RLAVVAQAAVKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGL 111

Query: 90  ----RLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLFLRPSDRLRGFLEEEKRITMENEA 149
               RL   +K F    PG+ +   + +       L  R +        +E  +  E+E 
Sbjct: 112 TRKRRLIALLKRF----PGVFEVVEEGVYS-----LRFRLTPAAERLYLDELHLKNESEG 171

Query: 150 LIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSF 209
           L V+KL KLLM+S+DK + ++K+  +K + G P +F   +  +YP+YF+++    D    
Sbjct: 172 LAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQM--DRGPG 231

Query: 210 LQLVSRNPDFAKSVIE------RRAEDESISTGIDIRPNFN-YNLPPGFFLRKEMREWVR 269
           L+L   +P+ A S  E      R  E++  +  ID    FN   LP G  L +     V 
Sbjct: 232 LELTHWDPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVA 291

Query: 270 DWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSN 329
            + E+ YISPY D SHL   S E EK   GV HE+LSL+L KR  V  L  F +E+RFS 
Sbjct: 292 QFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQ 351

Query: 330 AFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELL 369
           +   +  RH  +FY+SLKG  ++  LREAYK SQL++   L+ +K+K   L+
Sbjct: 352 SLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALV 392

[Close]

BLAST of Carg07235 vs. Swiss-Prot
Match: sp|B6TTV8|WTF1_MAIZE (Protein WHAT'S THIS FACTOR 1 OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-41
Identity = 112/336 (33.33%), Postives = 176/336 (52.38%), Query Frame = 0


Query: 42  RKDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFN- 101
           RK++  D  I+ DK+ KL  ++   ++ +P +V+ LR L + R+ L L    +       
Sbjct: 58  RKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIALLRR 117

Query: 102 -PGLLDTYYDRIKPKSEPVLFLRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDK 161
            PG+ D   + +       L  R +        +E R+  E+E L V+KL KLLM+S++K
Sbjct: 118 FPGVFDVVEEGVYS-----LRFRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEK 177

Query: 162 VLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIE 221
            + ++K+  +K + G P +F   +  +YP+YF+++    D    L+L   +P+ A S  E
Sbjct: 178 RILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRM--DRGPALELTHWDPELAVSAAE 237

Query: 222 ------RRAEDESISTGIDIRPNFN-YNLPPGFFLRKEMREWVRDWLELDYISPYEDVSH 281
                 R  E E  +  ID    FN   LP G  L +     +  + E+ YISPY D SH
Sbjct: 238 LAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYISPYADFSH 297

Query: 282 LAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSNAFSSVFTRHSGIFYLS 341
           L   S E EK   GV HE+LSL++ KR  V  L  F +E+RFS +   +  RH  +FY+S
Sbjct: 298 LRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIRHPDMFYVS 357

Query: 342 LKGGIETAMLREAYKGSQLIDCDPLLEIKDKFVELL 369
            KG  ++  LREAYK SQL++ + L+ +K+K   L+
Sbjct: 358 FKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALV 386

[Close]

BLAST of Carg07235 vs. Swiss-Prot
Match: sp|Q689D6|RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.1e-34
Identity = 92/340 (27.06%), Postives = 166/340 (48.82%), Query Frame = 0


Query: 43  KDSRLDEAIENDKRYKLCARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPG 102
           +D   D  +E +K+ +   +    +L++P   I +  L+   +RL L      F    PG
Sbjct: 48  RDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLG-----FKQHEPG 107

Query: 103 LLDTYYDRI----KPKSEPVLFLRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKD 162
                +  +    +   + +L+ R + +    +  E    ++     V++L KL+M+S  
Sbjct: 108 AFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMSNT 167

Query: 163 KVLSVDKLVQVKREFGFPNDFLVNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVI 222
             + ++ +   + EFG P DF  +++ K+P++F++I        ++++V ++P+ +   I
Sbjct: 168 GRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAI 227

Query: 223 ERRAEDESISTGI---DIRPNFNYNLPPGFFLRKEMREWVRDWLELDYISPYEDVS---- 282
           ER  E E  + GI   D+R +F  N PPGF + K  R  V  W  L Y SPYED+S    
Sbjct: 228 ERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDL 287

Query: 283 HLAQASPEMEKRTVGVFHELLSLSLFKRIPVPILGKFSDEYRFSNAFSSVFTRHSGIFYL 342
              +A   +EKR+V   HELLSL++ K+I +  +  F +             +H GIFY+
Sbjct: 288 RSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYI 347

Query: 343 SLKGG---IETAMLREAYKGSQLIDCDPLLEIKDKFVELL 369
           S +G    + T  LRE YK  +L++ + +   + +  EL+
Sbjct: 348 STRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELV 382

[Close]

BLAST of Carg07235 vs. TrEMBL
Match: tr|A0A0A0K559|A0A0A0K559_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392430 PE=4 SV=1)

HSP 1 Score: 687.6 bits (1773), Expect = 1.7e-194
Identity = 340/397 (85.64%), Postives = 365/397 (91.94%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           M S P +L SYLR  KS   CF+ ++ ++Q R +SSLKV+WRKD RLDEAIENDKRYKLC
Sbjct: 1   MFSTPNSLISYLRGIKSHCPCFLSQEIIVQFRPISSLKVVWRKDYRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQVIPLRYLEKRR+RLRLNVS+K F+ FNPGL DTYYDRIKPKSEPVLF
Sbjct: 61  ARVVKEVLNEPGQVIPLRYLEKRRERLRLNVSVKAFLGFNPGLFDTYYDRIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LR SDRLRGFLEEEKRI MENE LIVSKLCKLLM+SKDK+LSVDKLV VKR+FGFPNDFL
Sbjct: 121 LRASDRLRGFLEEEKRIMMENEELIVSKLCKLLMMSKDKMLSVDKLVHVKRDFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYPEYFQI+G PG+ KSFLQLVSRNPDFAKSVIERRAEDESISTGI +RPNF+Y 
Sbjct: 181 VNLVPKYPEYFQIVGCPGEGKSFLQLVSRNPDFAKSVIERRAEDESISTGIRMRPNFDYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGF LRKEMREWVRDWLELDYISPYEDVSHLAQ+SPEMEKRTVGVFHELLSLSLFKRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSHLAQSSPEMEKRTVGVFHELLSLSLFKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKF  EYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAY+G QLIDCDPLLEI
Sbjct: 301 PVPILGKFGGEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYEGGQLIDCDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARA 398
           K+KFVELLE+GWRERAEQRRQQA ++R DMEFM ARA
Sbjct: 361 KNKFVELLEQGWRERAEQRRQQANELRKDMEFMCARA 397

[Close]

BLAST of Carg07235 vs. TrEMBL
Match: tr|A0A1S3BS57|A0A1S3BS57_CUCME (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103492691 PE=4 SV=1)

HSP 1 Score: 662.9 bits (1709), Expect = 4.5e-187
Identity = 329/397 (82.87%), Postives = 355/397 (89.42%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           M S P++L SYLR  KS    F+ ++ ++Q R +SSLKV+WRKD RLDEAIENDKRYKLC
Sbjct: 1   MFSTPHSLISYLRRIKSPHPSFLSQEIIVQFRPISSLKVVWRKDYRLDEAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVVREVLNEPGQVIPLRYLEKRR+RLRLNVS+K F+ FNPGLLDTYYDRIKPKSEPVLF
Sbjct: 61  ARVVREVLNEPGQVIPLRYLEKRRERLRLNVSVKAFLGFNPGLLDTYYDRIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LR SDRLRGFLEEEKRI MENE LIVSKLCKLLM+SKDK          KR+FGFPNDFL
Sbjct: 121 LRASDRLRGFLEEEKRIMMENEELIVSKLCKLLMMSKDKXXXXXXXXXXKRDFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYPEYFQI+GSPG+ KSFLQLV+RNPDFAKSVIERRAEDES STGI +RPNF+Y 
Sbjct: 181 VNLVPKYPEYFQIVGSPGEGKSFLQLVTRNPDFAKSVIERRAEDESRSTGIRMRPNFDYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGF LRKEMREWVRDWLELDYISPYEDVS+L Q+SPEMEKRTVGVFHELLSLSL KRI
Sbjct: 241 LPPGFILRKEMREWVRDWLELDYISPYEDVSYLEQSSPEMEKRTVGVFHELLSLSLLKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKF DEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAY+G QLIDCDPLLEI
Sbjct: 301 PVPILGKFGDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYQGDQLIDCDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAARA 398
           K+KFVELLE+GWRERAEQRR+QA + R DMEFM ARA
Sbjct: 361 KNKFVELLEQGWRERAEQRREQANERRKDMEFMGARA 397

[Close]

BLAST of Carg07235 vs. TrEMBL
Match: tr|A0A2C9VU74|A0A2C9VU74_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G074100 PE=4 SV=1)

HSP 1 Score: 597.8 bits (1540), Expect = 1.8e-167
Identity = 297/393 (75.57%), Postives = 338/393 (86.01%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           ML KP+ ++S+L       +  V  K  +QI+++SSLKV+WRKD +LD AIE DKRYK+C
Sbjct: 1   MLLKPHPIYSHL------HNSLVNPKINIQIKSISSLKVVWRKDQKLDFAIEKDKRYKVC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQVIPLRYLEKRR+RLRLNV +KTF+  NPGL DTYYD+IKPKSEPVLF
Sbjct: 61  ARVVKEVLNEPGQVIPLRYLEKRRERLRLNVRVKTFIDQNPGLFDTYYDKIKPKSEPVLF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LR SDRLR FLEEEKRI +ENE  IVSKLCKLLM++KDKVLSVDKLV VKREFGFPNDFL
Sbjct: 121 LRVSDRLRNFLEEEKRIQLENEGFIVSKLCKLLMMAKDKVLSVDKLVHVKREFGFPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYP YF+++G PG+ KSFL+LV  NPD AKSVI +RAE+ES  TGI +RPNFNY 
Sbjct: 181 VNLVPKYPHYFRLVGFPGEGKSFLELVEWNPDLAKSVIVQRAEEESRFTGIRVRPNFNYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LPPGFFLRKEMREWVRDWLELDYISPY D SHL QASPEMEKRTVGVFHELLSLSLFKRI
Sbjct: 241 LPPGFFLRKEMREWVRDWLELDYISPYVDASHLDQASPEMEKRTVGVFHELLSLSLFKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKF++EYRFSN FSS FTRHSGIFY+SLKGGI+TAMLREAYK S+LID DPLLEI
Sbjct: 301 PVPILGKFNEEYRFSNNFSSAFTRHSGIFYMSLKGGIKTAMLREAYKDSELIDRDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFM 394
           KD+FV LLE+GW +RAEQ + + K +  +ME +
Sbjct: 361 KDRFVGLLEKGWEDRAEQLKSKRKVMVKNMEML 387

[Close]

BLAST of Carg07235 vs. TrEMBL
Match: tr|A0A061DV66|A0A061DV66_THECC (Ubiquitin carboxyl-terminal hydrolase family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_002907 PE=4 SV=1)

HSP 1 Score: 597.0 bits (1538), Expect = 3.0e-167
Identity = 299/396 (75.51%), Postives = 338/396 (85.35%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           ML K   + S +   K     F+  KF  QI+ +SSLKVIWRKD +LD+AIENDKRYKLC
Sbjct: 1   MLFKSQTISSSISYLKFDFDSFLNPKFTFQIKPISSLKVIWRKDQKLDQAIENDKRYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPGQ IPLRYL+KRR+RLRLNV +KTF++ NPGL DTYYDRI+PKSE V F
Sbjct: 61  ARVVKEVLNEPGQAIPLRYLDKRRERLRLNVKVKTFINNNPGLFDTYYDRIRPKSERVPF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LRPSD+LR FLEEEKRI  ENE L+VSKLCKLLM+S+ KV+SVDKLV VKREFG PNDFL
Sbjct: 121 LRPSDKLRNFLEEEKRIYSENEELVVSKLCKLLMMSRYKVISVDKLVHVKREFGLPNDFL 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           V+LVPKY  YF++ GSPG+ +SFL+LV  NP+FAKSVIE+RAE+ES  TGI +RPNFNY 
Sbjct: 181 VSLVPKYSNYFRLTGSPGEGQSFLELVEWNPEFAKSVIEQRAEEESRLTGIRVRPNFNYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LP GFFLRKEMREWVRDWLELDYISPYEDVSHL QAS EMEKR VGVFHELLSLSLFKR+
Sbjct: 241 LPAGFFLRKEMREWVRDWLELDYISPYEDVSHLDQASREMEKRMVGVFHELLSLSLFKRV 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           P PILGKF+D+YRFSNAFSSVFTRHSGIFY+SLKGGI+TA+LREAYK  QLID DPLLEI
Sbjct: 301 PAPILGKFTDDYRFSNAFSSVFTRHSGIFYMSLKGGIKTAVLREAYKDDQLIDKDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMAAR 397
           KDKFVELLEEGW+ERAE  R + +QV+ DME MA R
Sbjct: 361 KDKFVELLEEGWQERAELLRLRREQVKKDMEMMAMR 396

[Close]

BLAST of Carg07235 vs. TrEMBL
Match: tr|M5W646|M5W646_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243800 PE=4 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 1.5e-166
Identity = 295/394 (74.87%), Postives = 339/394 (86.04%), Query Frame = 0


Query: 1   MLSKPYALFSYLRSFKSAQSCFVRRKFVLQIRAVSSLKVIWRKDSRLDEAIENDKRYKLC 60
           ML K   + SYL +  +  +     +  LQ+R +SSLKV+WRKD +LD+AI+NDK+YKLC
Sbjct: 1   MLPKTRTISSYLHNHTTIFTSHTNPETHLQVRFISSLKVVWRKDRKLDQAIKNDKQYKLC 60

Query: 61  ARVVREVLNEPGQVIPLRYLEKRRQRLRLNVSIKTFMSFNPGLLDTYYDRIKPKSEPVLF 120
           ARVV+EVLNEPG+ IPLRYLEKRR+RLRLN+ +KTF+S NPGL D YYDRIKPK+EPV F
Sbjct: 61  ARVVKEVLNEPGKAIPLRYLEKRRERLRLNIKVKTFLSRNPGLFDIYYDRIKPKTEPVKF 120

Query: 121 LRPSDRLRGFLEEEKRITMENEALIVSKLCKLLMISKDKVLSVDKLVQVKREFGFPNDFL 180
           LR SDRL+  LEE   I MENE LIVSKLCKLLM+SKDKVLS DKLV VKREFGFPNDF+
Sbjct: 121 LRISDRLQQILEEGNGIVMENEPLIVSKLCKLLMMSKDKVLSADKLVHVKREFGFPNDFM 180

Query: 181 VNLVPKYPEYFQIIGSPGDEKSFLQLVSRNPDFAKSVIERRAEDESISTGIDIRPNFNYN 240
           VNLVPKYP+YF+I+G PG+EKSFL+LVS NP+FAKSVIERRAE+ES  TGI +RPNF Y 
Sbjct: 181 VNLVPKYPQYFRILGFPGEEKSFLELVSWNPEFAKSVIERRAEEESNLTGIRVRPNFYYK 240

Query: 241 LPPGFFLRKEMREWVRDWLELDYISPYEDVSHLAQASPEMEKRTVGVFHELLSLSLFKRI 300
           LP GFFL++EMREWVRDW+ELDYISPY+DVS L QAS EMEKRTVGVFHELLSLS+FKRI
Sbjct: 241 LPSGFFLKREMREWVRDWMELDYISPYKDVSQLDQASQEMEKRTVGVFHELLSLSIFKRI 300

Query: 301 PVPILGKFSDEYRFSNAFSSVFTRHSGIFYLSLKGGIETAMLREAYKGSQLIDCDPLLEI 360
           PVPILGKFSDEYRFSNAFS+VFTRHSGIFYLSLKGGI+TA+LREAYK  ++IDCDPLLEI
Sbjct: 301 PVPILGKFSDEYRFSNAFSNVFTRHSGIFYLSLKGGIKTAVLREAYKDDKMIDCDPLLEI 360

Query: 361 KDKFVELLEEGWRERAEQRRQQAKQVRNDMEFMA 395
           KDKFVELLEEGWRER EQ + Q ++V+ D E MA
Sbjct: 361 KDKFVELLEEGWRERKEQLQLQMEEVKKDKERMA 394

The following BLAST results are available for this feature:

BLAST of Carg07235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953521.1	3.4e-223	99.25	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022953522.1 protei...	[more]
XP_022992526.1	3.3e-218	97.24	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022992527.1 protein ...	[more]
XP_004136063.1	2.6e-194	85.64	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN44870.1 hyp...	[more]
XP_022150285.1	3.6e-188	84.38	protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]	[more]
XP_008451384.1	6.8e-187	82.87	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]	[more]

BLAST of Carg07235 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63090.1	3.1e-157	70.54	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G31290.1	5.2e-48	32.55	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G01037.1	6.4e-46	34.52	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	5.6e-42	30.59	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	6.2e-41	29.94	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of Carg07235 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A0MFS5\|WTF1_ARATH	1.1e-44	34.52	Protein WHAT'S THIS FACTOR 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g0103...	[more]
sp\|Q65XL5\|WTF1_ORYSJ	8.2e-43	33.52	Protein WHAT'S THIS FACTOR 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
sp\|B6TTV8\|WTF1_MAIZE	1.2e-41	33.33	Protein WHAT'S THIS FACTOR 1 OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1	[more]
sp\|Q689D6\|RPD1_ARATH	9.1e-34	27.06	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]

BLAST of Carg07235 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K559\|A0A0A0K559_CUCSA	1.7e-194	85.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392430 PE=4 SV=1	[more]
tr\|A0A1S3BS57\|A0A1S3BS57_CUCME	4.5e-187	82.87	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103492691 PE=4...	[more]
tr\|A0A2C9VU74\|A0A2C9VU74_MANES	1.8e-167	75.57	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G074100 PE=4 SV=...	[more]
tr\|A0A061DV66\|A0A061DV66_THECC	3.0e-167	75.51	Ubiquitin carboxyl-terminal hydrolase family protein isoform 1 OS=Theobroma caca...	[more]
tr\|M5W646\|M5W646_PRUPE	1.5e-166	74.87	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243800 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021099	PORR_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07235-RA	Carg07235-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 373..393
None	No IPR available	PANTHER	PTHR31476:SF3	SUBFAMILY NOT NAMED	coord: 19..394
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 19..394
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 43..372 e-value: 6.1E-102 score: 340.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07235	Cla014747	Watermelon (97103) v1	carwmB0106
Carg07235	Csa7G392430	Cucumber (Chinese Long) v2	carcuB0117
Carg07235	MELO3C015855	Melon (DHL92) v3.5.1	carmeB0113
Carg07235	ClCG09G006920	Watermelon (Charleston Gray)	carwcgB0108
Carg07235	CSPI07G16870	Wild cucumber (PI 183967)	carcpiB0122
Carg07235	Cucsa.084980	Cucumber (Gy14) v1	carcgyB0128
Carg07235	CmaCh17G011630	Cucurbita maxima (Rimu)	carcmaB0142
Carg07235	CmoCh17G011380	Cucurbita moschata (Rifu)	carcmoB0152
Carg07235	Lsi02G023070	Bottle gourd (USVL1VR-Ls)	carlsiB098
Carg07235	Cp4.1LG12g11800	Cucurbita pepo (Zucchini)	carcpeB0158
Carg07235	MELO3C015855.2	Melon (DHL92) v3.6.1	carmedB0115
Carg07235	CsaV3_7G028630	Cucumber (Chinese Long) v3	carcucB0126
Carg07235	Cla97C09G169490	Watermelon (97103) v2	carwmbB0117
Carg07235	Bhi09G000847	Wax gourd	carwgoB0131

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07235	Silver-seed gourd	carcarB135
Carg07235	Watermelon (Charleston Gray)	carwcgB0113
Carg07235	Cucumber (Gy14) v2	carcgybB0118
Carg07235	Cucumber (Gy14) v2	carcgybB0120
Carg07235	Cucurbita maxima (Rimu)	carcmaB0148
Carg07235	Cucurbita moschata (Rifu)	carcmoB0157
Carg07235	Cucurbita pepo (Zucchini)	carcpeB0161
Carg07235	Bottle gourd (USVL1VR-Ls)	carlsiB100
Carg07235	Watermelon (97103) v1	carwmB0109
Carg07235	Watermelon (97103) v2	carwmbB0116
Carg07235	Wax gourd	carwgoB0130