Lsi02G005890 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G005890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr02 : 5253110 .. 5253475 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

mRNA sequence

ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Coding sequence (CDS)

ATGGGTTCTTTGGCTTTGAAATTTCTCTGGCTGGTGGTTCTGTGTGCACTTATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTTCAGTTCTTTCCTGGATACGGCGGTGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGTGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGGGGCGGCGGAGGGTTTGGTGGAGGCGGTGGCGGTGGCATTTTAGGTGGTGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Protein sequence

MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGLP
Homology
[Close]
BLAST of Lsi02G005890 vs. TrEMBL
Match: A0A0A0LS00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-35
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 1 

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGS A K+LWLVVLCALIWASEPRKLVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]
BLAST of Lsi02G005890 vs. TrEMBL
Match: E5GC63_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.5e-34
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 1 

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]
BLAST of Lsi02G005890 vs. NCBI nr
Match: gi|778664863|ref|XP_011648421.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 1 

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGS A K+LWLVVLCALIWASEPRKLVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]
BLAST of Lsi02G005890 vs. NCBI nr
Match: gi|659068807|ref|XP_008446362.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-34
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 1 

Query: 1   MGSLALKFLWLVVLCALIWASEPRKLVITNGGEIESEKTVAFQFFPGYGGGLGGGGGFGG 60
           MGSLA K+LWLVVLCALI ASEPR+LVITNGGEIESEKT+ FQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

The following BLAST results are available for this feature:
BLAST of Lsi02G005890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi02G005890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS00_CUCSA1.3e-3595.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1[more]
E5GC63_CUCME5.5e-3494.21Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Lsi02G005890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi02G005890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664863|ref|XP_011648421.1|1.9e-3595.87PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus][more]
gi|659068807|ref|XP_008446362.1|7.9e-3494.21PREDICTED: glycine-rich cell wall structural protein [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G005890.1Lsi02G005890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G005890Csa1G062340Cucumber (Chinese Long) v2culsiB022
Lsi02G005890CSPI01G10570Wild cucumber (PI 183967)cpilsiB021
Lsi02G005890Cla019370Watermelon (97103) v1lsiwmB184
Lsi02G005890MELO3C002446Melon (DHL92) v3.5.1lsimeB179
Lsi02G005890ClCG03G004620Watermelon (Charleston Gray)lsiwcgB184
Lsi02G005890MELO3C002446.2Melon (DHL92) v3.6.1lsimedB189
Lsi02G005890Cla97C03G055780Watermelon (97103) v2lsiwmbB176
Lsi02G005890CsaV3_1G010650Cucumber (Chinese Long) v3cuclsiB022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G005890Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi02G005890Cucumber (Gy14) v1cgylsiB023
Lsi02G005890Cucumber (Gy14) v1cgylsiB094
Lsi02G005890Cucurbita maxima (Rimu)cmalsiB207
Lsi02G005890Cucurbita maxima (Rimu)cmalsiB373
Lsi02G005890Cucurbita maxima (Rimu)cmalsiB608
Lsi02G005890Cucurbita maxima (Rimu)cmalsiB796
Lsi02G005890Cucurbita moschata (Rifu)cmolsiB197
Lsi02G005890Cucurbita moschata (Rifu)cmolsiB200
Lsi02G005890Cucurbita moschata (Rifu)cmolsiB356
Lsi02G005890Cucurbita moschata (Rifu)cmolsiB596
Lsi02G005890Cucurbita pepo (Zucchini)cpelsiB026
Lsi02G005890Cucurbita pepo (Zucchini)cpelsiB057
Lsi02G005890Cucurbita pepo (Zucchini)cpelsiB417
Lsi02G005890Wild cucumber (PI 183967)cpilsiB030
Lsi02G005890Wild cucumber (PI 183967)cpilsiB444
Lsi02G005890Cucumber (Chinese Long) v2culsiB438
Lsi02G005890Melon (DHL92) v3.5.1lsimeB228
Lsi02G005890Watermelon (Charleston Gray)lsiwcgB172
Lsi02G005890Watermelon (97103) v1lsiwmB204
Lsi02G005890Cucumber (Gy14) v2cgyblsiB018
Lsi02G005890Cucumber (Gy14) v2cgyblsiB402
Lsi02G005890Melon (DHL92) v3.6.1lsimedB240
Lsi02G005890Silver-seed gourdcarlsiB447
Lsi02G005890Silver-seed gourdcarlsiB587
Lsi02G005890Silver-seed gourdcarlsiB847
Lsi02G005890Silver-seed gourdcarlsiB920
Lsi02G005890Cucumber (Chinese Long) v3cuclsiB029
Lsi02G005890Cucumber (Chinese Long) v3cuclsiB466
Lsi02G005890Watermelon (97103) v2lsiwmbB156
Lsi02G005890Wax gourdlsiwgoB235
Lsi02G005890Wax gourdlsiwgoB243