CSPI01G10570 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10570
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6639049 .. 6639529 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATTCTTTTTCTAAAAAAAATTATGGGTTCTTCGGCTTTCAAATATCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACAAATGGGGGAGAGATTGAGAGTGAAAAGACATTGCCTTTCCAGTTCTTTCCTGGATACGGAGGCGGGCTCGGCGGTGGCGGAGGGTTCGGTGGCGGCGGCGGCGGTGGGTTAGGTGGTGGTTCGGGCTTCGGCAGTGGAGGTGGAGGGGGTTTCGGATCTGGCATTGGAGGTCTAGGGAGTGGCGGTGGCGGAGGGTTTGGCGGCGGCGGTGGTGGTGGCATTTTAGGTGGCGGAGCTGGCGGAGGAGCAGGTGGTGGATTTGGAGGTGGACTGCCTTGATTTCAAAATTGTGTTTTGTTTCATCAGACGTTACTATATATTTGAGGGCTTGTTGAATAATTACTATATAAGATTTGGTTAATTATAATG

mRNA sequence

ATGGGTTCTTCGGCTTTCAAATATCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACAAATGGGGGAGAGATTGAGAGTGAAAAGACATTGCCTTTCCAGTTCTTTCCTGGATACGGAGGCGGGCTCGGCGGTGGCGGAGGGTTCGGTGGCGGCGGCGGCGGTGGGTTAGGTGGTGGTTCGGGCTTCGGCAGTGGAGGTGGAGGGGGTTTCGGATCTGGCATTGGAGGTCTAGGGAGTGGCGGTGGCGGAGGGTTTGGCGGCGGCGGTGGTGGTGGCATTTTAGGTGGCGGAGCTGGCGGAGGAGCAGGTGGTGGATTTGGAGGTGGACTGCCTTGA

Coding sequence (CDS)

ATGGGTTCTTCGGCTTTCAAATATCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACAAATGGGGGAGAGATTGAGAGTGAAAAGACATTGCCTTTCCAGTTCTTTCCTGGATACGGAGGCGGGCTCGGCGGTGGCGGAGGGTTCGGTGGCGGCGGCGGCGGTGGGTTAGGTGGTGGTTCGGGCTTCGGCAGTGGAGGTGGAGGGGGTTTCGGATCTGGCATTGGAGGTCTAGGGAGTGGCGGTGGCGGAGGGTTTGGCGGCGGCGGTGGTGGTGGCATTTTAGGTGGCGGAGCTGGCGGAGGAGCAGGTGGTGGATTTGGAGGTGGACTGCCTTGA
Homology
[Close]
BLAST of CSPI01G10570 vs. TrEMBL
Match: A0A0A0LS00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.9e-40
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
           MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]
BLAST of CSPI01G10570 vs. TrEMBL
Match: E5GC63_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.2e-37
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 1 

Query: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
           MGS AFKYLWLVVLCALI ASEPR+LVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]
BLAST of CSPI01G10570 vs. NCBI nr
Match: gi|778664863|ref|XP_011648421.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
           MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]
BLAST of CSPI01G10570 vs. NCBI nr
Match: gi|659068807|ref|XP_008446362.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 1 

Query: 1   MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60
           MGS AFKYLWLVVLCALI ASEPR+LVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGL 120
           GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGG GGGFGGGL
Sbjct: 61  GGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGL 120

Query: 121 P 122
           P
Sbjct: 121 P 121

The following BLAST results are available for this feature:
BLAST of CSPI01G10570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS00_CUCSA8.9e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062340 PE=4 SV=1[more]
E5GC63_CUCME9.2e-3796.69Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI01G10570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664863|ref|XP_011648421.1|1.3e-39100.00PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus][more]
gi|659068807|ref|XP_008446362.1|1.3e-3696.69PREDICTED: glycine-rich cell wall structural protein [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0009506 plasmodesma
molecular_function GO:0003674 molecular_function
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0016722 oxidoreductase activity, oxidizing metal ions
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10570.1CSPI01G10570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G10570Cla019370Watermelon (97103) v1cpiwmB010
CSPI01G10570Csa1G062340Cucumber (Chinese Long) v2cpicuB000
CSPI01G10570MELO3C002446Melon (DHL92) v3.5.1cpimeB024
CSPI01G10570ClCG03G004620Watermelon (Charleston Gray)cpiwcgB038
CSPI01G10570Lsi02G005890Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G10570MELO3C002446.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G10570CsaV3_1G010650Cucumber (Chinese Long) v3cpicucB001
CSPI01G10570Cla97C03G055780Watermelon (97103) v2cpiwmbB032
CSPI01G10570CsGy1G010490Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G10570Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G10570Bottle gourd (USVL1VR-Ls)cpilsiB030
CSPI01G10570Melon (DHL92) v3.6.1cpimedB076
CSPI01G10570Cucumber (Gy14) v2cgybcpiB247
CSPI01G10570Silver-seed gourdcarcpiB0531
CSPI01G10570Silver-seed gourdcarcpiB0670
CSPI01G10570Silver-seed gourdcarcpiB0968
CSPI01G10570Silver-seed gourdcarcpiB1044
CSPI01G10570Cucumber (Chinese Long) v3cpicucB009
CSPI01G10570Cucumber (Chinese Long) v3cpicucB010
CSPI01G10570Cucumber (Chinese Long) v3cpicucB051
CSPI01G10570Watermelon (97103) v2cpiwmbB001
CSPI01G10570Watermelon (97103) v2cpiwmbB041
CSPI01G10570Wax gourdcpiwgoB023
CSPI01G10570Wax gourdcpiwgoB033
CSPI01G10570Wax gourdcpiwgoB047
CSPI01G10570Wild cucumber (PI 183967)cpicpiB038
CSPI01G10570Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G10570Cucumber (Gy14) v1cgycpiB016
CSPI01G10570Cucumber (Gy14) v1cgycpiB090
CSPI01G10570Cucurbita maxima (Rimu)cmacpiB219
CSPI01G10570Cucurbita maxima (Rimu)cmacpiB401
CSPI01G10570Cucurbita maxima (Rimu)cmacpiB656
CSPI01G10570Cucurbita maxima (Rimu)cmacpiB865
CSPI01G10570Cucurbita moschata (Rifu)cmocpiB205
CSPI01G10570Cucurbita moschata (Rifu)cmocpiB383
CSPI01G10570Cucurbita moschata (Rifu)cmocpiB648
CSPI01G10570Cucurbita moschata (Rifu)cmocpiB845
CSPI01G10570Cucumber (Chinese Long) v2cpicuB044
CSPI01G10570Melon (DHL92) v3.5.1cpimeB036
CSPI01G10570Melon (DHL92) v3.5.1cpimeB086
CSPI01G10570Watermelon (Charleston Gray)cpiwcgB016
CSPI01G10570Watermelon (97103) v1cpiwmB043
CSPI01G10570Cucurbita pepo (Zucchini)cpecpiB050
CSPI01G10570Cucurbita pepo (Zucchini)cpecpiB474
CSPI01G10570Cucurbita pepo (Zucchini)cpecpiB506