Cla97C03G055780 (gene) Watermelon (97103) v2

Overview
NameCla97C03G055780
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionglycine-rich cell wall structural protein
LocationCla97Chr03 : 4705919 .. 4706284 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTGGCTTTCAAAATTCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGACTTCAGAGACCAGAAAACTTGTAATTAGCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTCCAGTTCTTTCCTGGATACGGCGGCGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGCGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGTGGCGGCGGAGGGTTTGGCGGTGTTGGTGACGGTGGCGCTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTTCCTTGA

mRNA sequence

ATGGGTTCTTTGGCTTTCAAAATTCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGACTTCAGAGACCAGAAAACTTGTAATTAGCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTCCAGTTCTTTCCTGGATACGGCGGCGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGCGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGTGGCGGCGGAGGGTTTGGCGGTGTTGGTGACGGTGGCGCTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTTCCTTGA

Coding sequence (CDS)

ATGGGTTCTTTGGCTTTCAAAATTCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGACTTCAGAGACCAGAAAACTTGTAATTAGCAATGGGGGAGAGATTGAGAGTGAAAAGACAGTGGCCTTCCAGTTCTTTCCTGGATACGGCGGCGGACTCGGCGGTGGCGGAGGGTTTGGTGGTGGTGGCGGTGGCGGGTTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGGGGGTTTTGGGTCTGGCATTGGGGGACTAGGCAGTGGTGGCGGCGGAGGGTTTGGCGGTGTTGGTGACGGTGGCGCTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTTCCTTGA

Protein sequence

MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGVGDGGALGGGAGGGAGGGFGGGLP
Homology
[Close]
BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_011648421.1 (PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothetical protein Csa_1G062340 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLG 54
          MGS AFK LWLVVLCALIW SE RKLVI+NGGEIESEKT+ FQFFPGYGGGLG
Sbjct: 1  MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLG 53

[Close]
BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_008446362.1 (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLG 54
          MGSLAFK LWLVVLCALI  SE R+LVI+NGGEIESEKT+ FQFFPGYGGGLG
Sbjct: 1  MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLG 53

[Close]
BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_022140151.1 (glycine-rich protein 5-like [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 7.2e-07
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 3  SLAFKILWLVVLCALIWTSETRKLVISNGGEI----ESEKTVAFQFFPGYGGGLG 54
          +LA K+LWLV+L ALI  SE RK ++ NGG+I    E+EKT+ FQFFPG+GGGLG
Sbjct: 5  ALASKVLWLVLLGALICASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLG 58

[Close]
BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_022994117.1 (glycine-rich protein 5 [Cucurbita maxima])

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 34/51 (66.67%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 1  MGS-LAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGG 51
          MGS LA K LWL+VL ALI  SE R+LV   GG   SEKT  FQFFPGYGG
Sbjct: 1  MGSFLALKFLWLLVLFALICASEPRRLV-GTGGGFGSEKTGYFQFFPGYGG 50

[Close]
BLAST of Cla97C03G055780 vs. NCBI nr
Match: XP_023542188.1 (glycine-rich protein 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 1  MGS-LAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYG 50
          MGS LA K LWL+VL ALI  SE R+LV   GG   SEKT  FQFFPGYG
Sbjct: 1  MGSFLALKFLWLLVLFALICASEPRRLV-GTGGGFGSEKTGYFQFFPGYG 49

[Close]
BLAST of Cla97C03G055780 vs. TrEMBL
Match: tr|A0A0A0LS00|A0A0A0LS00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.6e-17
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLG 54
          MGS AFK LWLVVLCALIW SE RKLVI+NGGEIESEKT+ FQFFPGYGGGLG
Sbjct: 1  MGSSAFKYLWLVVLCALIWASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLG 53

[Close]
BLAST of Cla97C03G055780 vs. TrEMBL
Match: tr|A0A1S3BEW4|A0A1S3BEW4_CUCME (glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC103489125 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.6e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLG 54
          MGSLAFK LWLVVLCALI  SE R+LVI+NGGEIESEKT+ FQFFPGYGGGLG
Sbjct: 1  MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLG 53

[Close]
BLAST of Cla97C03G055780 vs. TrEMBL
Match: tr|E5GC63|E5GC63_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.6e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  MGSLAFKILWLVVLCALIWTSETRKLVISNGGEIESEKTVAFQFFPGYGGGLG 54
          MGSLAFK LWLVVLCALI  SE R+LVI+NGGEIESEKT+ FQFFPGYGGGLG
Sbjct: 1  MGSLAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLG 53

The following BLAST results are available for this feature:
BLAST of Cla97C03G055780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648421.11.0e-1686.79PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508... [more]
XP_008446362.11.4e-1584.91PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 ... [more]
XP_022140151.17.2e-0761.82glycine-rich protein 5-like [Momordica charantia][more]
XP_022994117.15.2e-0566.67glycine-rich protein 5 [Cucurbita maxima][more]
XP_023542188.12.0e-0466.00glycine-rich protein 23 [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C03G055780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LS00|A0A0A0LS00_CUCSA6.6e-1786.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1[more]
tr|A0A1S3BEW4|A0A1S3BEW4_CUCME9.6e-1684.91glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC10348912... [more]
tr|E5GC63|E5GC63_CUCME9.6e-1684.91Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
BLAST of Cla97C03G055780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G055780 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G055780.1Cla97C03G055780.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G055780Cla019370Watermelon (97103) v1wmwmbB124
Cla97C03G055780Csa1G062340Cucumber (Chinese Long) v2cuwmbB032
Cla97C03G055780MELO3C002446Melon (DHL92) v3.5.1mewmbB156
Cla97C03G055780ClCG03G004620Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G055780CSPI01G10570Wild cucumber (PI 183967)cpiwmbB032
Cla97C03G055780Lsi02G005890Bottle gourd (USVL1VR-Ls)lsiwmbB176
Cla97C03G055780MELO3C002446.2Melon (DHL92) v3.6.1medwmbB145
Cla97C03G055780CsaV3_1G010650Cucumber (Chinese Long) v3cucwmbB030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G055780Watermelon (97103) v2wmbwmbB013
Cla97C03G055780Silver-seed gourdcarwmbB0517
Cla97C03G055780Silver-seed gourdcarwmbB0672
Cla97C03G055780Silver-seed gourdcarwmbB0976
Cla97C03G055780Silver-seed gourdcarwmbB1061
Cla97C03G055780Cucumber (Gy14) v2cgybwmbB032
Cla97C03G055780Cucumber (Gy14) v2cgybwmbB426
Cla97C03G055780Cucumber (Gy14) v1cgywmbB023
Cla97C03G055780Cucumber (Gy14) v1cgywmbB092
Cla97C03G055780Cucurbita maxima (Rimu)cmawmbB228
Cla97C03G055780Cucurbita maxima (Rimu)cmawmbB417
Cla97C03G055780Cucurbita maxima (Rimu)cmawmbB683
Cla97C03G055780Cucurbita maxima (Rimu)cmawmbB888
Cla97C03G055780Cucurbita moschata (Rifu)cmowmbB212
Cla97C03G055780Cucurbita moschata (Rifu)cmowmbB394
Cla97C03G055780Cucurbita moschata (Rifu)cmowmbB656
Cla97C03G055780Cucurbita moschata (Rifu)cmowmbB858
Cla97C03G055780Wild cucumber (PI 183967)cpiwmbB041
Cla97C03G055780Wild cucumber (PI 183967)cpiwmbB473
Cla97C03G055780Cucumber (Chinese Long) v3cucwmbB040
Cla97C03G055780Cucumber (Chinese Long) v3cucwmbB467
Cla97C03G055780Cucumber (Chinese Long) v2cuwmbB449
Cla97C03G055780Bottle gourd (USVL1VR-Ls)lsiwmbB131
Cla97C03G055780Melon (DHL92) v3.6.1medwmbB524
Cla97C03G055780Melon (DHL92) v3.5.1mewmbB158
Cla97C03G055780Melon (DHL92) v3.5.1mewmbB531
Cla97C03G055780Watermelon (Charleston Gray)wcgwmbB103
Cla97C03G055780Watermelon (97103) v1wmwmbB260
Cla97C03G055780Wax gourdwgowmbB421
Cla97C03G055780Wax gourdwgowmbB473