Lsi02G004650 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G004650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger CCCH domain-containing protein 43
Location	chr02 : 3897490 .. 3899170 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTTGGGATGGAAACTCCTCTCTTTTAATGGCTTCATAATTTTATTTACAATTTTTTTGGTAAAAGAATAAAATACAATCCACCCCAATTCACTTTCCAATCCAATATTGTCAAAGCACCCCACGAATTGTCTAGAAGAAAAGAAAAAAGAAAAAAAAAATGAAAATTTGAAAATTGTTTAGAGAGAGGCAGAGCAAACGTACGCAGTGCAGAAAGTAACCTTTTTTTTGTGCAACTTTTCTTGTGTTTAGTTCTCACTAGCAATTAGCGTCAACCCAATTGCTATTTGCTACAAAAGTTTATTTTTACACTACACCCATTTCTCCATGTACTTTTATTCTCTGTAGCTAGGGTTTTTTGGGTTCAAATGTGAAGCAGAATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACTGTCAAGCACCGGCTTCTGGGTTTCAATCCTCACAGTTTCATAGTTCTGTTCTTGATCCTGCACCATTTGATGCACAGCGTGTAGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGAAAACCGTGAAAGATTTTGATGAAGGTGGAGAATGGGAAGTTGCGAAGAATCCCTGTGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAGTGATCGAGATAGAAGCGTTCGGAATGACGAGGATGATGACGATGATGATGTCGATGAGGAGGGTGATGCAGGCGACGGCGGTGAGGTGGAAAAGAAAGGGGATTGGAGAGCCAGAAGCAACCAGTACCCAGTACGGCCTGAGGCTGAGGATTGTGCCTTTTACCTTAAAACTGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAAGAACCAGGTATGCTTTTGGTGATCTCATTCACTTGAGGAAGCAAATATCTCTTTTTAAATGTTTAATTGTTTATATTTGTTTGTTGACAATAAAATCTCCTTTTCCAGTATTATCTTCAGCTGATAAGTTAATTTAACTTTTGCATGTACAGTTTTTATACTCCTACATCTATCATCTATGCAAATGAGTTGCCAAATAGTCTTAATTATTTTCCCTGAGAAGAAACTATTTAATTCTGTCAAGAGAACTGAGGATAGAAGAACTGGTCTGCTGGATTGCAGTACATTTCTGCATTAACTTTGTCTAGTTTTGATTACAAACATATAAAAAAATCGTTGAAAGAATTAGAAGTGCAAATGAGGAGGGCCAAGTCCAACCTATTGGAGATTGCAAAGACAACCCCAATTGGTCTTGTTTTTAAGCTCATGCTGCATTAAACCGATAAAATTAGCTGGAAAGATCGTAATATTTCTCTTTTTCTCTTAAATTTGAGGAAGTAGTCTTCACTCAGACATCATTATAAATGCTAGTAACGTGTGTCAGCCTGCTTAGTTTTGTCCGAGCTGAGACTTTCCTGTTTTCGGTGCGTTGGTATCCGTCCATCTCTTGTTCCATCAGTAAGAAGATGGATTGGAACTGTTATCTTATGATATTTTGAGTGTACTCATTGAAGAATTGATATTTTGGCTTTGTGGTAATTTTCTGGAGAAGTACTCTTAAGCAAAATTGCTTAAACATACTTATCTACTAGTTAAGAATAAAGTTAAAATTTGCAGAGGACTGTGTGGTTCTTAG

mRNA sequence

ATGGAACCTTGGGATGGAAACTCCTCTCTTTTAATGGCTTCATAATTTTATTTACAATTTTTTTGGTAAAAGAATAAAATACAATCCACCCCAATTCACTTTCCAATCCAATATTGTCAAAGCACCCCACGAATTGTCTAGAAGAAAAGAAAAAAGAAAAAAAAAATGAAAATTTGAAAATTGTTTAGAGAGAGGCAGAGCAAACGTACGCAGTGCAGAAAGTAACCTTTTTTTTGTGCAACTTTTCTTGTGTTTAGTTCTCACTAGCAATTAGCGTCAACCCAATTGCTATTTGCTACAAAAGTTTATTTTTACACTACACCCATTTCTCCATGTACTTTTATTCTCTGTAGCTAGGGTTTTTTGGGTTCAAATGTGAAGCAGAATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACTGTCAAGCACCGGCTTCTGGGTTTCAATCCTCACAGTTTCATAGTTCTGTTCTTGATCCTGCACCATTTGATGCACAGCGTGTAGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGAAAACCGTGAAAGATTTTGATGAAGGTGGAGAATGGGAAGTTGCGAAGAATCCCTGTGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAGTGATCGAGATAGAAGCGTTCGGAATGACGAGGATGATGACGATGATGATGTCGATGAGGAGGGTGATGCAGGCGACGGCGGTGAGGTGGAAAAGAAAGGGGATTGGAGAGCCAGAAGCAACCAGTACCCAGTACGGCCTGAGGCTGAGGATTGTGCCTTTTACCTTAAAACTGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAAGAACCAGTACATTTCTGCATTAACTTTGTCTAGTTTTGATTACAAACATATAAAAAAATCGTTGAAAGAATTAGAAGTGCAAATGAGGAGGGCCAAGTCCAACCTATTGGAGATTGCAAAGACAACCCCAATTGTAACGTGTGTCAGCCTGCTTAGTTTTGTCCGAGCTGAGACTTTCCTGTTTTCGGTGCGTTGGTATCCGTCCATCTCTTGTTCCATCATTAAGAATAAAGTTAAAATTTGCAGAGGACTGTGTGGTTCTTAG

Coding sequence (CDS)

ATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACTGTCAAGCACCGGCTTCTGGGTTTCAATCCTCACAGTTTCATAGTTCTGTTCTTGATCCTGCACCATTTGATGCACAGCGTGTAGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGAAAACCGTGAAAGATTTTGATGAAGGTGGAGAATGGGAAGTTGCGAAGAATCCCTGTGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAGTGATCGAGATAGAAGCGTTCGGAATGACGAGGATGATGACGATGATGATGTCGATGAGGAGGGTGATGCAGGCGACGGCGGTGAGGTGGAAAAGAAAGGGGATTGGAGAGCCAGAAGCAACCAGTACCCAGTACGGCCTGAGGCTGAGGATTGTGCCTTTTACCTTAAAACTGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAAGAACCAGTACATTTCTGCATTAACTTTGTCTAGTTTTGATTACAAACATATAAAAAAATCGTTGAAAGAATTAGAAGTGCAAATGAGGAGGGCCAAGTCCAACCTATTGGAGATTGCAAAGACAACCCCAATTGTAACGTGTGTCAGCCTGCTTAGTTTTGTCCGAGCTGAGACTTTCCTGTTTTCGGTGCGTTGGTATCCGTCCATCTCTTGTTCCATCATTAAGAATAAAGTTAAAATTTGCAGAGGACTGTGTGGTTCTTAG

Protein sequence

MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYISALTLSSFDYKHIKKSLKELEVQMRRAKSNLLEIAKTTPIVTCVSLLSFVRAETFLFSVRWYPSISCSIIKNKVKICRGLCGS

Homology

[Close]

BLAST of Lsi02G004650 vs. Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 89  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLK 148
           +D+S ++ SV       + + D     G   + E++G  +     YPVRP++EDC+FY++
Sbjct: 53  LDDSAKELSVPISVPQGNVETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMR 112

Query: 149 TGTCKFGSFCKFNHPVRKKNQ 170
           TG+CK+GS CKFNHPVR+K Q
Sbjct: 113 TGSCKYGSSCKFNHPVRRKLQ 133

[Close]

BLAST of Lsi02G004650 vs. Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1


Query: 134 YPVRPEAEDCAFYLKTGTCKFGSFCKFNHP 164
           YP+RP  ++CA+YL+TG CKFGS CKF+HP
Sbjct: 144 YPLRPNEKECAYYLRTGQCKFGSTCKFHHP 173

[Close]

BLAST of Lsi02G004650 vs. Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 1


Query: 134 YPVRPEAEDCAFYLKTGTCKFGSFCKFNHP 164
           YP+RP  ++CA+YLKTG CK+G+ CKF+HP
Sbjct: 168 YPLRPSEKECAYYLKTGQCKYGNTCKFHHP 197

[Close]

BLAST of Lsi02G004650 vs. Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1


Query: 130 RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP 164
           R N +P RP   +C FY+KTG CKFG+ CKF+HP
Sbjct: 267 RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHP 300

[Close]

BLAST of Lsi02G004650 vs. Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 134 YPVRPEAEDCAFYLKTGTCKFGSFCKFNHPV 165
           YP+RP  ++C++YL+TG CKFG  C+FNHPV
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPV 175

[Close]

BLAST of Lsi02G004650 vs. TrEMBL
Match: E5GBX3_CUCME (Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.5e-76
Identity = 150/176 (85.23%), Postives = 158/176 (89.77%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKE 60
           MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE
Sbjct: 1   MEPSEAVSVPNHCEAPPSGFQSSQLHSSVHDPPPFDAQHVTTDDRIHAELQKLDLKDEKE 60

Query: 61  KTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEGDA----G 120
           + VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRND+DD  DDVDEE DA    G
Sbjct: 61  EPVKDFDDGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDGYDDVDEEVDAGDGDG 120

Query: 121 DGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS 173
           DGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Sbjct: 121 DGGEVERKGDWRGKSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVS 176

[Close]

BLAST of Lsi02G004650 vs. TrEMBL
Match: A0A0A0LU93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050060 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.6e-75
Identity = 149/174 (85.63%), Postives = 157/174 (90.23%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKE 60
           MEPSEAVSVPNHC+AP S FQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE
Sbjct: 1   MEPSEAVSVPNHCEAPPSEFQSSQLHSSVHDPPPFDAQHVPTDDRIHAELQKLDLKDEKE 60

Query: 61  KTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEGDA--GDG 120
           + VKDFD GGEWEV KNP EDEGNDTKKIDE+DRDRSVRND+DDD DDVDEE DA  GDG
Sbjct: 61  EPVKDFDGGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDDYDDVDEEVDAGDGDG 120

Query: 121 GEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS 173
           GEVE+KGDWR +SNQYPVRP+AEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Sbjct: 121 GEVERKGDWRGKSNQYPVRPDAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVS 174

[Close]

BLAST of Lsi02G004650 vs. TrEMBL
Match: A0A151TE42_CAJCA (Zinc finger CCCH domain-containing protein 43 OS=Cajanus cajan GN=KK1_011562 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-17
Identity = 72/151 (47.68%), Postives = 92/151 (60.93%), Query Frame = 1


Query: 27  SSVLDPAPFDAQRVATDDRIHAELQ-KLDLK--DEKEKTVKDFDEGG---EWEVAKNPCE 86
           S V  P P D    A +D +  ELQ KLDLK  DE E+ V +F++GG   + E AK   +
Sbjct: 26  SPVAHPEPSDLNHAAEEDPLAGELQTKLDLKGGDEGEEKVSNFNDGGGVCDEETAKGDGD 85

Query: 87  DEGNDTKKIDESDRDRSVRND-EDDDDDDVDEEGDAGDGGEVEKKGDWRAR-SNQYPVRP 146
             G +T   +E   +  V  D E D D DVD   D  DG  VEKK +  +  ++QYP+RP
Sbjct: 86  SRGWETNSWNE---EVGVDVDVEGDGDGDVDVHDDDDDGDGVEKKEEKSSGGTHQYPLRP 145

Query: 147 EAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ 170
           EAEDCAFY+KTG CKFG  CKFNHP+R+K+Q
Sbjct: 146 EAEDCAFYMKTGNCKFGFNCKFNHPIRRKSQ 173

[Close]

BLAST of Lsi02G004650 vs. TrEMBL
Match: M5WCW0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004690mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.8e-17
Identity = 74/189 (39.15%), Postives = 102/189 (53.97%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFH------------SSVLDPAPFDAQRVATDDRIHA 60
           ME SEA+SVP +  A  +     + H            SS  DPAP D      D     
Sbjct: 1   MEVSEAISVPPNLDAN-NNHHIDEHHQPSHSELVFLPSSSDPDPAPSDFDHAVLD----- 60

Query: 61  ELQKLDLKDEKEKT-----VKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDED 120
           ELQKLDLK+++E+      + +F +    E      E+E  D +K   + R+    N+ +
Sbjct: 61  ELQKLDLKEKEEEEEGEDHLDEFQKLDLKEKEDAKEEEEEEDVEKKSSNGRETENENENE 120

Query: 121 DDDDDVDEEGDAG-----DGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFC 168
           ++ +   E+ D G     DGG+ EKK +   R  QYPVRPEAEDC++YLKTG+CKFGS C
Sbjct: 121 NESERQSEQSDGGENQSEDGGDAEKKAEESRRRYQYPVRPEAEDCSYYLKTGSCKFGSNC 180

[Close]

BLAST of Lsi02G004650 vs. TrEMBL
Match: I1K073_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G044300 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1


Query: 1   MEPSEAVSVP---NHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQ-KLDLK 60
           ME SE+ SV    ++ + P  G  SS        P P D    A ++ +  ELQ KLDLK
Sbjct: 1   MEGSESDSVSLSISNGEEPQLGRPSSP----AAPPEPSDLNHAAEEETLSGELQSKLDLK 60

Query: 61  D--EKEKTVKDFDEGG---EWEVAKNPCEDEGNDTKKIDES-DRDRSVRNDEDDDDDDVD 120
           D  E E+ V DF++GG   + E  K   + +G +T   +E    D  V  D D D DD D
Sbjct: 61  DVDESEEKVSDFNDGGGVCDEETGKGDGDSKGWETNSWNEEVGVDVDVDGDGDGDGDD-D 120

Query: 121 EEGDAGDGGEVEKK-GDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ 172
            +GD     EVEKK G     ++ YP+RPEAEDCAFY+KTG CKFG  CKFNHP+++K+Q
Sbjct: 121 VDGDVDGDDEVEKKEGRNSGGTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIKRKSQ 177

[Close]

BLAST of Lsi02G004650 vs. TAIR10
Match: AT5G63260.2 (AT5G63260.2 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-10
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 1


Query: 89  IDESDRDRSVRNDEDDDDDDVDEEGDAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLK 148
           +D+S ++ SV       + + D     G   + E++G  +     YPVRP++EDC+FY++
Sbjct: 53  LDDSAKELSVPISVPQGNVETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMR 112

Query: 149 TGTCKFGSFCKFNHPVRKKNQYISAL 175
           TG+CK+GS CKFNHPVR+K Q +  L
Sbjct: 113 TGSCKYGSSCKFNHPVRRKLQDLKFL 138

[Close]

BLAST of Lsi02G004650 vs. TAIR10
Match: AT3G02830.1 (AT3G02830.1 zinc finger protein 1)

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-08
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1


Query: 130 RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP 164
           R N +P RP   +C FY+KTG CKFG+ CKF+HP
Sbjct: 267 RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHP 300

[Close]

BLAST of Lsi02G004650 vs. TAIR10
Match: AT3G06410.1 (AT3G06410.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-08
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 134 YPVRPEAEDCAFYLKTGTCKFGSFCKFNHPV 165
           YP+RP  ++C++YL+TG CKFG  C+FNHPV
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPV 175

[Close]

BLAST of Lsi02G004650 vs. TAIR10
Match: AT5G16540.1 (AT5G16540.1 zinc finger nuclease 3)

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-08
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1


Query: 130 RSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHP 164
           R N +P RP   +C FY+KTG CKFG+ CKF+HP
Sbjct: 236 RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHP 269

[Close]

BLAST of Lsi02G004650 vs. TAIR10
Match: AT3G48440.1 (AT3G48440.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 54  DLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEG 113
           DL    E         G  EV K   E   + ++     D +  V  ++++++++ D +G
Sbjct: 32  DLNHAAEDLSDKLKNVGLNEVTKEQSEKMMSVSESNGGLDSNAVVTINQEEEEEEEDRDG 91

Query: 114 DAGDGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ 170
                G  E + +     N YPVRP AEDC+FY++TG+CKFGS CKFNHP+ +K Q
Sbjct: 92  YGYGDGWSENESE-----NVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQ 142

[Close]

BLAST of Lsi02G004650 vs. NCBI nr
Match: gi|659067397|ref|XP_008439243.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 7.9e-76
Identity = 150/176 (85.23%), Postives = 158/176 (89.77%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKE 60
           MEPSEAVSVPNHC+AP SGFQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE
Sbjct: 1   MEPSEAVSVPNHCEAPPSGFQSSQLHSSVHDPPPFDAQHVTTDDRIHAELQKLDLKDEKE 60

Query: 61  KTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEGDA----G 120
           + VKDFD+GGEWEV KNP EDEGNDTKKIDE+DRDRSVRND+DD  DDVDEE DA    G
Sbjct: 61  EPVKDFDDGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDGYDDVDEEVDAGDGDG 120

Query: 121 DGGEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS 173
           DGGEVE+KGDWR +SNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Sbjct: 121 DGGEVERKGDWRGKSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVS 176

[Close]

BLAST of Lsi02G004650 vs. NCBI nr
Match: gi|449469596|ref|XP_004152505.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 5.1e-75
Identity = 149/174 (85.63%), Postives = 157/174 (90.23%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKE 60
           MEPSEAVSVPNHC+AP S FQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE
Sbjct: 1   MEPSEAVSVPNHCEAPPSEFQSSQLHSSVHDPPPFDAQHVPTDDRIHAELQKLDLKDEKE 60

Query: 61  KTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEGDA--GDG 120
           + VKDFD GGEWEV KNP EDEGNDTKKIDE+DRDRSVRND+DDD DDVDEE DA  GDG
Sbjct: 61  EPVKDFDGGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDDYDDVDEEVDAGDGDG 120

Query: 121 GEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS 173
           GEVE+KGDWR +SNQYPVRP+AEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Sbjct: 121 GEVERKGDWRGKSNQYPVRPDAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVS 174

[Close]

BLAST of Lsi02G004650 vs. NCBI nr
Match: gi|778657993|ref|XP_011651926.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 5.1e-75
Identity = 149/174 (85.63%), Postives = 157/174 (90.23%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKE 60
           MEPSEAVSVPNHC+AP S FQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE
Sbjct: 1   MEPSEAVSVPNHCEAPPSEFQSSQLHSSVHDPPPFDAQHVPTDDRIHAELQKLDLKDEKE 60

Query: 61  KTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEGDA--GDG 120
           + VKDFD GGEWEV KNP EDEGNDTKKIDE+DRDRSVRND+DDD DDVDEE DA  GDG
Sbjct: 61  EPVKDFDGGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDDYDDVDEEVDAGDGDG 120

Query: 121 GEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQYIS 173
           GEVE+KGDWR +SNQYPVRP+AEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ +S
Sbjct: 121 GEVERKGDWRGKSNQYPVRPDAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVS 174

[Close]

BLAST of Lsi02G004650 vs. NCBI nr
Match: gi|778657996|ref|XP_011651936.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 148/172 (86.05%), Postives = 156/172 (90.70%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFHSSVLDPAPFDAQRVATDDRIHAELQKLDLKDEKE 60
           MEPSEAVSVPNHC+AP S FQSSQ HSSV DP PFDAQ V TDDRIHAELQKLDLKDEKE
Sbjct: 1   MEPSEAVSVPNHCEAPPSEFQSSQLHSSVHDPPPFDAQHVPTDDRIHAELQKLDLKDEKE 60

Query: 61  KTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDDDVDEEGDA--GDG 120
           + VKDFD GGEWEV KNP EDEGNDTKKIDE+DRDRSVRND+DDD DDVDEE DA  GDG
Sbjct: 61  EPVKDFDGGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDDYDDVDEEVDAGDGDG 120

Query: 121 GEVEKKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQY 171
           GEVE+KGDWR +SNQYPVRP+AEDCAFYLKTGTCKFGSFCKFNHPVRKKNQ+
Sbjct: 121 GEVERKGDWRGKSNQYPVRPDAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQF 172

[Close]

BLAST of Lsi02G004650 vs. NCBI nr
Match: gi|1009130550|ref|XP_015882360.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 [Ziziphus jujuba])

HSP 1 Score: 99.4 bits (246), Expect = 9.8e-18
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = 1


Query: 1   MEPSEAVSVPNHCQAPASGFQSSQFHSSV------------LDPAPFDAQRVATDDR-IH 60
           MEPSEA SVP +   P +  Q+    S++            LDPAP D  + A   R I 
Sbjct: 1   MEPSEASSVPTN---PTNDSQNDDASSALQPSLPSSNGDPDLDPAPTDLDQAAQGVREIE 60

Query: 61  AELQKLDLKDEKEKTVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNDEDDDDD 120
            +  ++ LK+ KE+  +  + G + +  ++  E + +  ++  + +  +S   +E D  +
Sbjct: 61  EQFGEMGLKENKEENEEVVESGLKEKEEEDGAEGDSDGGERERKEENGKSEEEEESDGGE 120

Query: 121 DVDEEGDA----GDGGEVEK--KGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFN 173
           + +E G      G+G E+EK  +G    R NQYPVRPEAEDC+FYLKTGTCKFGS CKFN
Sbjct: 121 NENENGSEVEVEGNGDELEKNNEGGGSNRRNQYPVRPEAEDCSFYLKTGTCKFGSNCKFN 180

The following BLAST results are available for this feature:

BLAST of Lsi02G004650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H67_ARATH	1.4e-08	41.98	Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g632...	[more]
C3H63_ORYSJ	4.6e-07	66.67	Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN...	[more]
C3H12_ORYSJ	1.0e-06	63.33	Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN...	[more]
C3H33_ARATH	1.7e-06	58.82	Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE...	[more]
C3H34_ARATH	1.7e-06	61.29	Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g064...	[more]

BLAST of Lsi02G004650 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBX3_CUCME	5.5e-76	85.23	Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LU93_CUCSA	3.6e-75	85.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050060 PE=4 SV=1	[more]
A0A151TE42_CAJCA	4.4e-17	47.68	Zinc finger CCCH domain-containing protein 43 OS=Cajanus cajan GN=KK1_011562 PE=...	[more]
M5WCW0_PRUPE	5.8e-17	39.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004690mg PE=4 SV=1	[more]
I1K073_SOYBN	2.9e-16	42.86	Uncharacterized protein OS=Glycine max GN=GLYMA_05G044300 PE=4 SV=1	[more]

BLAST of Lsi02G004650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63260.2	6.1e-10	40.70	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G02830.1	9.7e-08	58.82	zinc finger protein 1	[more]
AT3G06410.1	9.7e-08	61.29	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G16540.1	9.7e-08	58.82	zinc finger nuclease 3	[more]
AT3G48440.1	1.7e-07	35.34	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

BLAST of Lsi02G004650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067397\|ref\|XP_008439243.1\|	7.9e-76	85.23	PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo]	[more]
gi\|449469596\|ref\|XP_004152505.1\|	5.1e-75	85.63	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 [Cucumis sat...	[more]
gi\|778657993\|ref\|XP_011651926.1\|	5.1e-75	85.63	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 [Cucumis sat...	[more]
gi\|778657996\|ref\|XP_011651936.1\|	1.1e-74	86.05	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3 [Cucumis sat...	[more]
gi\|1009130550\|ref\|XP_015882360.1\|	9.8e-18	38.22	PREDICTED: zinc finger CCCH domain-containing protein 43 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G004650.1	Lsi02G004650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 143..162 score: 2.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 141..163 score: 3.5
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 137..164 score: 2.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 137..165 score: 1
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 137..166 score: 1.4
None	No IPR available	unknown	Coil	Coil	coord: 181..208 scor
None	No IPR available	PANTHER	PTHR12506	PROTEIN PHOSPHATASE RELATED	coord: 27..169 score: 4.0
None	No IPR available	PANTHER	PTHR12506:SF20	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43	coord: 27..169 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G004650	Csa1G050060	Cucumber (Chinese Long) v2	culsiB022
Lsi02G004650	CSPI01G09130	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G004650	Cucsa.391690	Cucumber (Gy14) v1	cgylsiB633
Lsi02G004650	CmaCh18G002080	Cucurbita maxima (Rimu)	cmalsiB370
Lsi02G004650	CmoCh18G001840	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G004650	Cla002582	Watermelon (97103) v1	lsiwmB184
Lsi02G004650	MELO3C002328	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G004650	ClCG03G003420	Watermelon (Charleston Gray)	lsiwcgB184
Lsi02G004650	MELO3C002328.2	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G004650	Cla97C03G054500	Watermelon (97103) v2	lsiwmbB176
Lsi02G004650	Cp4.1LG20g03260	Cucurbita pepo (Zucchini)	cpelsiB423
Lsi02G004650	Cp4.1LG09g09820	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G004650	CsGy1G009150	Cucumber (Gy14) v2	cgyblsiB018
Lsi02G004650	Carg06769	Silver-seed gourd	carlsiB447
Lsi02G004650	Carg07573	Silver-seed gourd	carlsiB918
Lsi02G004650	CsaV3_1G009210	Cucumber (Chinese Long) v3	cuclsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G004650	Cucurbita maxima (Rimu)	cmalsiB202
Lsi02G004650	Cucurbita moschata (Rifu)	cmolsiB192
Lsi02G004650	Wax gourd	lsiwgoB240