Lsi02G002990 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G002990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RPA-interacting B
Location	chr02 : 2581037 .. 2583314 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAAATGGAAGACGATGATTCAAATTCCGACATTGAAACCCATCGTTCTTCGATTAAGACCCATCCTCGCTACAACAATCAACAGTCATGGAAGCAGAAGGTGAATTTTCTCTTTTCTCGATGCCTTGTTCTGTGTTTTTGGCGGGTTTTTTTATTTATTTATTTATTCGAAATTGAAATTTTACAATCCATAGCTGAGGGAAAACTGTTACAAGAGAGTCAGAGAAGGAAGAAGCCGCTTGCTCTGGAAGATGAGGTTGCCCATCTCCTCGCCCACTTATCCCCATTCTCTTAATAATCGACAGCATGTCAATTTTTTCTTTTCTTTTCATGTATTTACAATTTTTGTTTTGTCATTGCAATGAATTTTAACAATTAGTTGTTGGGTGTTGCATAATTGGTGCTTCAGATGCTTTAATCCTTCTTTTGTTATGTAATTCGTGTCTTTTCTTTGTGGGTATTTTGTTGGTTGTAGGATTTTATCAAATCTGCTTTTCAAGACATCTTTTCTGATGAGCTGAAAAAGATTTAAGACCAATCTGTGAATGACTATAATAAGAATATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGAATTCAGGATGCTTATGAAGGTGAAGGTGAAGAAATATTGTTGGAAATGCAAAGGATTTTTTATGAAGATCTGAATGTTGATCTGAGACAAAAAGGTGATTTTGCTGATGCAGTTTTATTTTCTAAAGTTCATTGTCTCAAAGCTGTTGATATATTTTCTGTTTTGGAATTGAAAAACATCATCCTCCTACCATAAGTGGGGGAAAAAATGCAGTAGCAGCAAGTTGGCTGTCTTCCAAGGACTAAATGATTTGTCATTCTTCTGGGAAACTCTGTTTGATCTTTCAATTTTATGATAGTTATTAATTAGGATTGATTTTCGATAGTTAAGTTCAGGCAACAATAGTCAAAGTCAAGTAATATTAATAATTGAACTTGTGCTATTGTTTCATCCGTTCTTTGAATTTTATTTATGTTACTGCAGGTTCTGTTAATTTTTTTTGGTAAAATACTGCTGGTTCTGTTATAATATATGGTGATCGATCTTCTCTGTTTATCTTTTAGCTGTCAAAATCACTATTTTGAGTAGGATGTTTACTCAGCTCTTTGCAGAATCTGAAGGCCCTATTCTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAGCATATGCAACTTAGTAGTGAGAAGGTTGGTTTTCATCTTGACTCTTATGAAAATTACAAAATCTTATATGTCTTCTACAAGAGCAATTAAAGCATGATTTATTCTTAATATAATCACAAGCTTGCATTTCCTTTTTAAAATATCATGGTAGGATCTTGAGAAGTTTTGGTGTCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTGATGATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTTTCCACTAACTTGATCTTAAAACCTTGTAGCTAACCATCCTCTTCTTAAATCCCATCTTTTACTCCAAGCTGCATATTAGGTTATTATTGTTATTCTTTTTTGGATAAGCAGCATTTCATTGATAAATAAAATAAGGTAAAAGCCTGCACCCCGCAACATAATTTTCCAATTGGAAACTAAATTAGATAAACTAAAATGAGTAAAAAGGTGCTTAGTTTTACACCAGTGAAAAGCAGTAGATAAGATCAAATCCACGAAATGATTAAAGGAGGAAAAAGAGCCTTTGAAAAGGCGGCCATTGCGCTCTCCCCAAAGAATCGAGAAGAAAGCAGTCAAGCACGAGTAATAACCATATTAGGTTATTAGGTTCTTGCTATTACTTATAAATTAATGGTTGTTGTCTTTGTAAACGTGTCAGATTATTCTTACAACTAATATGTTACTTCCTGAAGGAATTAAGAAGACCACTCCCAACTTAGACTGGAAGTTGGTGCCTATGTTTATTGTCATGGCCATGTGAGGGATGTTATGTAAAATTTTGAAATATTTATTTAATGCGGGATATTTCAAATTAATGTTCCCTTCATTTTAGAAGATTTTGTTTATTTTTTCCCCATATTTCTAGCTAAAAGTCGATCACCTCTCTATTGAGATCTCAAGTATATGTCGAATATACTGTTATACACTAGTCCATCTTTAGTATCCTAAGGCTCTATGAAAAATGTAAATATAAATAATGTTGGGGCAAGGTTGGGCCTTAGGACTTGACCTAGAGTAGAG

mRNA sequence

TCAAAATGGAAGACGATGATTCAAATTCCGACATTGAAACCCATCGTTCTTCGATTAAGACCCATCCTCGCTACAACAATCAACAGTCATGGAAGCAGAAGGTGAATTTTCTCTTTTCTCGATGCCTTGTTCTGTGTTTTTGGCGGCTGAGGGAAAACTGTTACAAGAGAGTCAGAGAAGGAAGAAGCCGCTTGCTCTGGAAGATGAGGTTGCCCATCTCCTCGCCCACTTATCCCCATTCTCTTAATAATCGACAGCATGCTGCTGATGTTCTTTGGGAATATGAGGGAATTCAGGATGCTTATGAAGGTGAAGGTGAAGAAATATTGTTGGAAATGCAAAGGATTTTTTATGAAGATCTGAATGTTGATCTGAGACAAAAAGGTGATTTTGCTGATGCAGTTTTATTTTCTAAATTAAGTTCAGGCAACAATAGTCAAAGTCAACTCTTTGCAGAATCTGAAGGCCCTATTCTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAGCATATGCAACTTAGTAGTGAGAAGGATCTTGAGAAGTTTTGGTGTCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTGATGATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTTTCCACTAACTTGATCTTAAAACCTTGTAGCTAACCATCCTCTTCTTAAATCCCATCTTTTACTCCAAGCTGCATATTAGGTTATTATTGTTATTCTTTTTTGGATAAGCAGCATTTCATTGATAAATAAAATAAGGTAAAAGCCTGCACCCCGCAACATAATTTTCCAATTGGAAACTAAATTAGATAAACTAAAATGAGTAAAAAGGTGCTTAGTTTTACACCAGTGAAAAGCAGTAGATAAGATCAAATCCACGAAATGATTAAAGGAGGAAAAAGAGCCTTTGAAAAGGCGGCCATTGCGCTCTCCCCAAAGAATCGAGAAGAAAGCAGTCAAGCACGAGTAATAACCATATTAGGTTATTAGGTTCTTGCTATTACTTATAAATTAATGGTTGTTGTCTTTGTAAACGTGTCAGATTATTCTTACAACTAATATGTTACTTCCTGAAGGAATTAAGAAGACCACTCCCAACTTAGACTGGAAGTTGGTGCCTATGTTTATTGTCATGGCCATGTGAGGGATGTTATGTAAAATTTTGAAATATTTATTTAATGCGGGATATTTCAAATTAATGTTCCCTTCATTTTAGAAGATTTTGTTTATTTTTTCCCCATATTTCTAGCTAAAAGTCGATCACCTCTCTATTGAGATCTCAAGTATATGTCGAATATACTGTTATACACTAGTCCATCTTTAGTATCCTAAGGCTCTATGAAAAATGTAAATATAAATAATGTTGGGGCAAGGTTGGGCCTTAGGACTTGACCTAGAGTAGAG

Coding sequence (CDS)

ATGGAAGACGATGATTCAAATTCCGACATTGAAACCCATCGTTCTTCGATTAAGACCCATCCTCGCTACAACAATCAACAGTCATGGAAGCAGAAGGTGAATTTTCTCTTTTCTCGATGCCTTGTTCTGTGTTTTTGGCGGCTGAGGGAAAACTGTTACAAGAGAGTCAGAGAAGGAAGAAGCCGCTTGCTCTGGAAGATGAGGTTGCCCATCTCCTCGCCCACTTATCCCCATTCTCTTAATAATCGACAGCATGCTGCTGATGTTCTTTGGGAATATGAGGGAATTCAGGATGCTTATGAAGGTGAAGGTGAAGAAATATTGTTGGAAATGCAAAGGATTTTTTATGAAGATCTGAATGTTGATCTGAGACAAAAAGGTGATTTTGCTGATGCAGTTTTATTTTCTAAATTAAGTTCAGGCAACAATAGTCAAAGTCAACTCTTTGCAGAATCTGAAGGCCCTATTCTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAGCATATGCAACTTAGTAGTGAGAAGGATCTTGAGAAGTTTTGGTGTCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTGATGATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTTTCCACTAA

Protein sequence

MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQHAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEVFH

Homology

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BLAST of Lsi02G002990 vs. TrEMBL
Match: A0A0A0LTY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G044910 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.9e-57
Identity = 135/239 (56.49%), Postives = 149/239 (62.34%), Query Frame = 1


Query: 1   MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVN------FLFSRCLVLCFWRL------ 60
           ME+D  N  I+T RSSIKTHPRYNNQQSWKQK+           R  +L   RL      
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  --------RENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQHAADVLWEYEGIQDAY 120
                   +++  K   +       K     S   Y  +L +   AADVLWEYEGI DAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWE 180
           EG+GEEILLEMQRIFYEDLNVDLRQK                        ESE PI+TWE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQK------------------------ESEDPIVTWE 180

Query: 181 DEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           DEEDEFLARAVYEHMQLS+EK LEKFWCP+CKQGELQENNH  IHCTHCGLRLNKGNEV
Sbjct: 181 DEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENNH-FIHCTHCGLRLNKGNEV 214

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BLAST of Lsi02G002990 vs. TrEMBL
Match: A0A0B0NLC6_GOSAR (RPA-interacting B OS=Gossypium arboreum GN=F383_17311 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-41
Identity = 104/234 (44.44%), Postives = 128/234 (54.70%), Query Frame = 1


Query: 14  RSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISS 73
           R S+KTHPR+NN   WK                +LRENCYKRVRE R+RLLWKMRLP + 
Sbjct: 14  RPSLKTHPRFNNYSLWKH---------------KLRENCYKRVREDRTRLLWKMRLPAAQ 73

Query: 74  PTYP----------------------------HSLNNRQHAADVLWEYEGIQDAYEGEGE 133
                                            S N+   A D LWEY G+QDAY+GE E
Sbjct: 74  SLNHKEFIKTAFQDIVSDELKKIKGSPISDCLESSNSVSSAPDELWEYSGLQDAYQGECE 133

Query: 134 EILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE 193
           EILLEMQRIFYEDL  +   K                        E +  I +WEDE+DE
Sbjct: 134 EILLEMQRIFYEDLRREPAGK------------------------EPKEGIESWEDEQDE 193

Query: 194 FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           +LARAVYEHMQL+ E+  ++ WCPICK+GELQ+ NH +I+CT C L+LN+ +EV
Sbjct: 194 YLARAVYEHMQLNDEQVQKQIWCPICKRGELQQ-NHQLIYCTLCKLQLNRDDEV 207

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BLAST of Lsi02G002990 vs. TrEMBL
Match: A0A059A3K0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02344 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.5e-40
Identity = 99/238 (41.60%), Postives = 129/238 (54.20%), Query Frame = 1


Query: 10  IETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRL 69
           I   R+ +K+   +N++  WK K               LRENCY+RVRE R RLLWKMRL
Sbjct: 50  IARRRTPLKSRSGFNDRSGWKHK---------------LRENCYRRVREDRGRLLWKMRL 109

Query: 70  PISSPTYPH----------------------------SLNNRQHAADVLWEYEGIQDAYE 129
           P S P                                ++++    AD+LWEY+G+ +AY+
Sbjct: 110 PDSEPCTSQEYIKSAFRDIVSDELKKIKSTSVADSLKTVHDTHEQADMLWEYDGLHNAYQ 169

Query: 130 GEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWED 189
           G+ EEILLEMQRIFYEDL+ +  +K                        ESE  +  WED
Sbjct: 170 GDCEEILLEMQRIFYEDLDSEQNRK------------------------ESESCVDNWED 229

Query: 190 EEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           EEDE LA AV+EHMQL+ ++  ++ WCPICKQGELQE NH +I+CT C L+LNKG EV
Sbjct: 230 EEDELLACAVFEHMQLNEDEVSKRVWCPICKQGELQE-NHSLIYCTLCNLKLNKGTEV 247

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BLAST of Lsi02G002990 vs. TrEMBL
Match: A0A059A4T8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02344 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.2e-40
Identity = 98/238 (41.18%), Postives = 129/238 (54.20%), Query Frame = 1


Query: 10  IETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRL 69
           I   R+ +K+   +N++  WK K               LRENCY+RVRE R RLLWKMRL
Sbjct: 50  IARRRTPLKSRSGFNDRSGWKHK---------------LRENCYRRVREDRGRLLWKMRL 109

Query: 70  PISSPTYPH----------------------------SLNNRQHAADVLWEYEGIQDAYE 129
           P S P                                ++++    AD+LWEY+G+ +AY+
Sbjct: 110 PDSEPCTSQEYIKSAFRDIVSDELKKIKSTSVADSLKTVHDTHEQADMLWEYDGLHNAYQ 169

Query: 130 GEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWED 189
           G+ EEILLEMQRIFYEDL+ +  +K                        ESE  +  WED
Sbjct: 170 GDCEEILLEMQRIFYEDLDSEQNRK------------------------ESESCVDNWED 229

Query: 190 EEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           EEDE LA AV+EHMQL+ ++  ++ WCPICKQGELQE NH +I+CT C L+LNKG E+
Sbjct: 230 EEDELLACAVFEHMQLNEDEVSKRVWCPICKQGELQE-NHSLIYCTLCNLKLNKGTEI 247

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BLAST of Lsi02G002990 vs. TrEMBL
Match: W9QUV9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001274 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.6e-37
Identity = 102/248 (41.13%), Postives = 132/248 (53.23%), Query Frame = 1


Query: 2   EDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRS 61
           + D + + I + R+S+KTHP +N+   WK+K               LRENCYKRVRE R 
Sbjct: 101 QTDSAKTSIRS-RTSLKTHPFFNHHDIWKRK---------------LRENCYKRVREDRR 160

Query: 62  RLLWKMR-LPISSP----------------------------TYPHSLNNRQ--HAADVL 121
           RL+WKMR +P S P                            +Y +   +     + D+L
Sbjct: 161 RLVWKMRVIPSSQPLNLGSKDLIKSAFKDIVSDELKKLKDSSSYDNMKTSTSIPESDDIL 220

Query: 122 WEYEGIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFA 181
           WEY G+ DAY+GE EEILLEMQ IFYEDL+ +L +K                        
Sbjct: 221 WEYGGLHDAYQGECEEILLEMQMIFYEDLSTELARK------------------------ 280

Query: 182 ESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCG 219
           E E  + TWEDEEDE+L+ AVYEH+QL+ +K  E  WCPICK+GELQEN  L I C  C 
Sbjct: 281 EPENYVETWEDEEDEYLSHAVYEHLQLNEKKLQEVIWCPICKRGELQENQSL-ISCNLCE 307

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BLAST of Lsi02G002990 vs. TAIR10
Match: AT4G12760.1 (AT4G12760.1 unknown protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 60/133 (45.11%), Postives = 79/133 (59.40%), Query Frame = 1


Query: 88  DVLWEYE-GIQDAYEGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQS 147
           D+LWEYE G++  YEG+ EEILLEMQ+IFY+DL  +    G F                 
Sbjct: 99  DILWEYEEGLKGVYEGDSEEILLEMQQIFYKDLLSETNVNGSFVQ--------------- 158

Query: 148 QLFAESEGPILTWEDEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHC 207
                    + TWEDEED++LA  V ++M L+SE++  + WCPICK+GEL E NH  I C
Sbjct: 159 ---------VETWEDEEDDYLAALVSQNMCLNSEQEESQIWCPICKKGELME-NHRHIDC 206

Query: 208 THCGLRLNKGNEV 220
             C ++LNKG EV
Sbjct: 219 NMCDMQLNKGEEV 206

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BLAST of Lsi02G002990 vs. NCBI nr
Match: gi|778657584|ref|XP_011651131.1| (PREDICTED: uncharacterized protein LOC101216926 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 4.2e-57
Identity = 135/239 (56.49%), Postives = 149/239 (62.34%), Query Frame = 1


Query: 1   MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVN------FLFSRCLVLCFWRL------ 60
           ME+D  N  I+T RSSIKTHPRYNNQQSWKQK+           R  +L   RL      
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  --------RENCYKRVREGRSRLLWKMRLPISSPTYPHSLNNRQHAADVLWEYEGIQDAY 120
                   +++  K   +       K     S   Y  +L +   AADVLWEYEGI DAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWE 180
           EG+GEEILLEMQRIFYEDLNVDLRQK                        ESE PI+TWE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQK------------------------ESEDPIVTWE 180

Query: 181 DEEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           DEEDEFLARAVYEHMQLS+EK LEKFWCP+CKQGELQENNH  IHCTHCGLRLNKGNEV
Sbjct: 181 DEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENNH-FIHCTHCGLRLNKGNEV 214

[Close]

BLAST of Lsi02G002990 vs. NCBI nr
Match: gi|659067046|ref|XP_008437393.1| (PREDICTED: uncharacterized protein LOC103482820 isoform X1 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 4.2e-57
Identity = 132/238 (55.46%), Postives = 154/238 (64.71%), Query Frame = 1


Query: 1   MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGR 60
           MEDD+ N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGR
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQK---------------LRENCCKRVREGR 60

Query: 61  SRLLWKMRLPISSPTYPHSLNNRQHAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLN 120
           SRLLWKMRLP+SSPTYPHSLNNRQ         + I+ A++    + L +++     D N
Sbjct: 61  SRLLWKMRLPMSSPTYPHSLNNRQQ--------DFIKSAFQDIFSDELKKIKDESVNDFN 120

Query: 121 VDLRQKGDFADAVL----FSKLSSGNNSQ-----SQLF----------AESEGPILTWED 180
            +L    + AD +           G+  +      ++F           ESEGPI+TWED
Sbjct: 121 ENLPSVPEAADVLWEYEGIHDAYEGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWED 180

Query: 181 EEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           EEDEFLARAVYEHMQLS+EK LEKFWCP+CKQGELQEN+H  IHCT CGLRLNKGNEV
Sbjct: 181 EEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENSH-FIHCTQCGLRLNKGNEV 214

[Close]

BLAST of Lsi02G002990 vs. NCBI nr
Match: gi|659067048|ref|XP_008437401.1| (PREDICTED: uncharacterized protein LOC103482820 isoform X2 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 2.3e-55
Identity = 129/235 (54.89%), Postives = 151/235 (64.26%), Query Frame = 1


Query: 1   MEDDDSNSDIETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGR 60
           MEDD+ N  I+T RSSIKTHPRYNNQQSWKQK               LRENC KRVREGR
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQK---------------LRENCCKRVREGR 60

Query: 61  SRLLWKMRLPISSPTYPHSLNNRQHAADVLWEYEGIQDAYEGEGEEILLEMQRIFYEDLN 120
           SRLLWKMRLP+SSPTYPHSLNNRQ         + I+ A++    + L +++     D N
Sbjct: 61  SRLLWKMRLPMSSPTYPHSLNNRQQ--------DFIKSAFQDIFSDELKKIKDESVNDFN 120

Query: 121 VDLRQKGDFADAVL----FSKLSSGNNSQ-----SQLF----------AESEGPILTWED 180
            +L    + AD +           G+  +      ++F           ESEGPI+TWED
Sbjct: 121 ENLPSVPEAADVLWEYEGIHDAYEGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWED 180

Query: 181 EEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKG 217
           EEDEFLARAVYEHMQLS+EK LEKFWCP+CKQGELQEN+H  IHCT CGLRLNKG
Sbjct: 181 EEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENSH-FIHCTQCGLRLNKG 211

[Close]

BLAST of Lsi02G002990 vs. NCBI nr
Match: gi|728833181|gb|KHG12624.1| (RPA-interacting B [Gossypium arboreum])

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 104/234 (44.44%), Postives = 128/234 (54.70%), Query Frame = 1


Query: 14  RSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRLPISS 73
           R S+KTHPR+NN   WK                +LRENCYKRVRE R+RLLWKMRLP + 
Sbjct: 14  RPSLKTHPRFNNYSLWKH---------------KLRENCYKRVREDRTRLLWKMRLPAAQ 73

Query: 74  PTYP----------------------------HSLNNRQHAADVLWEYEGIQDAYEGEGE 133
                                            S N+   A D LWEY G+QDAY+GE E
Sbjct: 74  SLNHKEFIKTAFQDIVSDELKKIKGSPISDCLESSNSVSSAPDELWEYSGLQDAYQGECE 133

Query: 134 EILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWEDEEDE 193
           EILLEMQRIFYEDL  +   K                        E +  I +WEDE+DE
Sbjct: 134 EILLEMQRIFYEDLRREPAGK------------------------EPKEGIESWEDEQDE 193

Query: 194 FLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           +LARAVYEHMQL+ E+  ++ WCPICK+GELQ+ NH +I+CT C L+LN+ +EV
Sbjct: 194 YLARAVYEHMQLNDEQVQKQIWCPICKRGELQQ-NHQLIYCTLCKLQLNRDDEV 207

[Close]

BLAST of Lsi02G002990 vs. NCBI nr
Match: gi|702495760|ref|XP_010037063.1| (PREDICTED: uncharacterized protein LOC104425896 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 173.7 bits (439), Expect = 3.6e-40
Identity = 99/238 (41.60%), Postives = 129/238 (54.20%), Query Frame = 1


Query: 10  IETHRSSIKTHPRYNNQQSWKQKVNFLFSRCLVLCFWRLRENCYKRVREGRSRLLWKMRL 69
           I   R+ +K+   +N++  WK K               LRENCY+RVRE R RLLWKMRL
Sbjct: 50  IARRRTPLKSRSGFNDRSGWKHK---------------LRENCYRRVREDRGRLLWKMRL 109

Query: 70  PISSPTYPH----------------------------SLNNRQHAADVLWEYEGIQDAYE 129
           P S P                                ++++    AD+LWEY+G+ +AY+
Sbjct: 110 PDSEPCTSQEYIKSAFRDIVSDELKKIKSTSVADSLKTVHDTHEQADMLWEYDGLHNAYQ 169

Query: 130 GEGEEILLEMQRIFYEDLNVDLRQKGDFADAVLFSKLSSGNNSQSQLFAESEGPILTWED 189
           G+ EEILLEMQRIFYEDL+ +  +K                        ESE  +  WED
Sbjct: 170 GDCEEILLEMQRIFYEDLDSEQNRK------------------------ESESCVDNWED 229

Query: 190 EEDEFLARAVYEHMQLSSEKDLEKFWCPICKQGELQENNHLMIHCTHCGLRLNKGNEV 220
           EEDE LA AV+EHMQL+ ++  ++ WCPICKQGELQE NH +I+CT C L+LNKG EV
Sbjct: 230 EEDELLACAVFEHMQLNEDEVSKRVWCPICKQGELQE-NHSLIYCTLCNLKLNKGTEV 247

The following BLAST results are available for this feature:

BLAST of Lsi02G002990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G002990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTY4_CUCSA	2.9e-57	56.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G044910 PE=4 SV=1	[more]
A0A0B0NLC6_GOSAR	1.0e-41	44.44	RPA-interacting B OS=Gossypium arboreum GN=F383_17311 PE=4 SV=1	[more]
A0A059A3K0_EUCGR	2.5e-40	41.60	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02344 PE=4 SV=1	[more]
A0A059A4T8_EUCGR	3.2e-40	41.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02344 PE=4 SV=1	[more]
W9QUV9_9ROSA	2.6e-37	41.13	Uncharacterized protein OS=Morus notabilis GN=L484_001274 PE=4 SV=1	[more]

BLAST of Lsi02G002990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12760.1	2.0e-25	45.11	unknown protein	[more]

BLAST of Lsi02G002990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657584\|ref\|XP_011651131.1\|	4.2e-57	56.49	PREDICTED: uncharacterized protein LOC101216926 [Cucumis sativus]	[more]
gi\|659067046\|ref\|XP_008437393.1\|	4.2e-57	55.46	PREDICTED: uncharacterized protein LOC103482820 isoform X1 [Cucumis melo]	[more]
gi\|659067048\|ref\|XP_008437401.1\|	2.3e-55	54.89	PREDICTED: uncharacterized protein LOC103482820 isoform X2 [Cucumis melo]	[more]
gi\|728833181\|gb\|KHG12624.1\|	1.4e-41	44.44	RPA-interacting B [Gossypium arboreum]	[more]
gi\|702495760\|ref\|XP_010037063.1\|	3.6e-40	41.60	PREDICTED: uncharacterized protein LOC104425896 isoform X2 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028158	RPA_interact_N_dom
IPR028156	RIP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G002990.1	Lsi02G002990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028156	RPA-interacting protein	PANTHER	PTHR31742	FAMILY NOT NAMED	coord: 158..214 score: 3.2E-24coord: 47..133 score: 3.2
IPR028158	RPA-interacting protein, N-terminal domain	PFAM	PF14766	RPA_interact_N	coord: 47..69 score: 5.
None	No IPR available	PANTHER	PTHR31742:SF1	RPA-INTERACTING PROTEIN	coord: 158..214 score: 3.2E-24coord: 47..133 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G002990	Csa1G044910	Cucumber (Chinese Long) v2	culsiB022
Lsi02G002990	CSPI01G07830	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G002990	Cucsa.097810	Cucumber (Gy14) v1	cgylsiB117
Lsi02G002990	CmaCh18G001180	Cucurbita maxima (Rimu)	cmalsiB370
Lsi02G002990	CmoCh18G000930	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G002990	Cla008352	Watermelon (97103) v1	lsiwmB199
Lsi02G002990	MELO3C002194	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G002990	ClCG01G014510	Watermelon (Charleston Gray)	lsiwcgB173
Lsi02G002990	MELO3C002194.2	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G002990	Cla97C01G013540	Watermelon (97103) v2	lsiwmbB158
Lsi02G002990	Bhi08G001153	Wax gourd	lsiwgoB238
Lsi02G002990	Cp4.1LG09g10730	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G002990	CsGy1G007660	Cucumber (Gy14) v2	cgyblsiB018
Lsi02G002990	Carg06674	Silver-seed gourd	carlsiB447
Lsi02G002990	CsaV3_1G007790	Cucumber (Chinese Long) v3	cuclsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G002990	Silver-seed gourd	carlsiB919
Lsi02G002990	Cucurbita maxima (Rimu)	cmalsiB208
Lsi02G002990	Cucurbita moschata (Rifu)	cmolsiB198
Lsi02G002990	Cucurbita pepo (Zucchini)	cpelsiB418