CsGy1G007660 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G007660
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RPA-interacting protein A
Location	Chr1 : 4907571 .. 4909998 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCGTAATCATCGCCCCAGACTACATTCTTGAACAAAATGTCACCCCGTCGACATGTAAACGACCATTCACAATCATAACAAGCCGAGGGCAAATTTCGGTACCCCAGTCGTTGAATAAAACAGTTAAAGAATGGAAGAAGATAGTCCAAATCCCGTCATCCAAACCCGCCGTTCTTCAATTAAGACCCATCCTCGTTACAACAATCAACAATCATGGAAGCAGAAGGTGAATTTTCTCTTTGCTCGATGCCTTGTTCTGTGTTTTTTTGGCGGGTTTTTGTTTAATTCGAAAATTAAAGTCTACTATTGATAGCTGAGGGAAAACTGTTGCAAGAGAGTTAGAGAAGGAAGAAGCCGCTTGCTCTGGAAAATGAGGTTGCCCATGTCCTCGCCCACTTATTCCCATTCTCTCAACAATCGACAGCAGGTCAATTTTTATAATTTTTTGTTTTTTCATTGCAATTAATTGATGGGTGTTGCATAATTTGTGCTCCAAATACTTCAATCCTTCTTTTGTAATGTAGTTTGTGTCTGTTCTTTTTGGGTATTTTGTTGGTTGTAGGATTTGATCAAATCTGCTTTTCAAGACATCTTTGCTGATGAGCTGAAAAAGATTAAAGATGAATCTGTGAATGACTATAATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCATGATGCCTATGAAGGTGATGGTGAAGAAATACTGTTGGAAATGCAAAGGATCTTTTATGAGGATCTGAATGTTGATCTGAGACAAAAAGGTGAACTTTCCGATGCTGTTTTATTTTCTGAAGTTCATTATCTCAAAGTTTGTATATTCTGTGGCTTTCTTCCAAGGACTAAATGGTTTGTCATTCTCCGGGGAAACTGTGTTTTATGGTAGTCATTAATTTGGATTGATTTTCATTAGTTAAGTGCATGCAGCAATAGTCAATGTCAAGTAATAATAATAATTGAACTTGTGTATTGTTTCATCTGTTCTTTTAATTTTATTGATGTTACTGCAGGTTCTGTTGTAGTATATGGTGATCGATCTTCTCTGTTATTATTTTAGCTTTTAAAAACCCTATTTTGAGTAGGATGTTTACTCAGTTTTTTGCAGAATCTGAAGACCCTATTGTGACATGGGAAGATGAAGAAGATGAGTTCTTAGCCCGTGCAGTTTATGAACATATGCAACTTAGTAATGAGAAGGTTAGTTTTCATCCTTACTTTTGAGGGTTGTGAACACTTGTCCATGCAAATTACAAAATCTTATGCCTCCTACAAGAGTAATTAACTTGAAATTTTGTATACTTTCGGCGTTTTTTTTAATCATATCTTACATTTACATTGGTTAGGCATGATTTATTCTTAGTGTAATCGTAAGCTTACATGTCCTGTTTAAAATTTCACGTTAGATTCTTGAGAAGTTCTGGTGCCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTCATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTTTCCACTTGATCTTAAGACCTCTGAGTTGATCATCCTCTTCTTAATCACATCTTTTACTCCAAGGTCCATATTAAGTTATTAGGCAGTTGCTATTACTTGAGTGAGTGTCAATCAATGGTTGTTGTCTTCTTAACATGTCAGATTATTCTTGCAGCTAATATGTTACTTCCTGAATGAATTACGAAGACCACTCTCAACTTAGACTGGAAGTTGGCGCCTATGTTTATTGTCATTTGGTCATGGGACAGATGTTATATGAACTTTCCAACCCTCCCCCCCAATAATAAAATAAAATAAAAAGAGAAAAGAGAAAAACTAATGAAAATAAATCTTTGGAAGGTAAATTTGATTATCTTGTGCTGCGCTGTGGTGTCCTACTGGCCATGTCTGGCATAGAATAACTGTGTGCAATAATATCAGTATGTGATATTGAAGTCGTAATTTGTCGAAATGTTAACTTTGCAATTTTTTTATTATTTGTCATATGACCTTTCAGGTTACTCTGGACCTCCTCCGTTGCCGGTTGGCAGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGTAGATTTAACATTACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGGTTGTAATATAGCATGTTAATTAAGAATCACCTGTCTCAACGTTTGTGATTAAAATGATTTTTTATTGGTTATGACAAAAGATGATTGTGACACTCGAGGTTGTGAATTAATTGTAACATACCATGCTAAGAATCAGGTACCTGAAAGTTTATCGACGAGATTCTTCGTACTTAGATACGACAGAAAAATGATAACACATTTGTGTTTAAAATAAAGGCTCGTGAAGAATTTAGTGAC

mRNA sequence

ATTCGTAATCATCGCCCCAGACTACATTCTTGAACAAAATGTCACCCCGTCGACATGTAAACGACCATTCACAATCATAACAAGCCGAGGGCAAATTTCGGTACCCCAGTCGTTGAATAAAACAGTTAAAGAATGGAAGAAGATAGTCCAAATCCCGTCATCCAAACCCGCCGTTCTTCAATTAAGACCCATCCTCGTTACAACAATCAACAATCATGGAAGCAGAAGATTAAAGATGAATCTGTGAATGACTATAATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCATGATGCCTATGAAGGTGATGGTGAAGAAATACTGTTGGAAATGCAAAGGATCTTTTATGAGGATCTGAATGTTGATCTGAGACAAAAAGAATCTGAAGACCCTATTGTGACATGGGAAGATGAAGAAGATGAGTTCTTAGCCCGTGCAGTTTATGAACATATGCAACTTAGTAATGAGAAGATTCTTGAGAAGTTCTGGTGCCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTCATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTACTCTGGACCTCCTCCGTTGCCGGTTGGCAGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGTAGATTTAACATTACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGGTTGTAATATAGCATGTTAATTAAGAATCACCTGTCTCAACGTTTGTGATTAAAATGATTTTTTATTGGTTATGACAAAAGATGATTGTGACACTCGAGGTTGTGAATTAATTGTAACATACCATGCTAAGAATCAGGTACCTGAAAGTTTATCGACGAGATTCTTCGTACTTAGATACGACAGAAAAATGATAACACATTTGTGTTTAAAATAAAGGCTCGTGAAGAATTTAGTGAC

Coding sequence (CDS)

ATGGAAGAAGATAGTCCAAATCCCGTCATCCAAACCCGCCGTTCTTCAATTAAGACCCATCCTCGTTACAACAATCAACAATCATGGAAGCAGAAGATTAAAGATGAATCTGTGAATGACTATAATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCATGATGCCTATGAAGGTGATGGTGAAGAAATACTGTTGGAAATGCAAAGGATCTTTTATGAGGATCTGAATGTTGATCTGAGACAAAAAGAATCTGAAGACCCTATTGTGACATGGGAAGATGAAGAAGATGAGTTCTTAGCCCGTGCAGTTTATGAACATATGCAACTTAGTAATGAGAAGATTCTTGAGAAGTTCTGGTGCCCTATATGTAAACAAGGAGAGCTGCAAGAGAACAACCACTTCATACATTGCACTCATTGTGGACTTCGGCTTAACAAAGGCAATGAGGTTACTCTGGACCTCCTCCGTTGCCGGTTGGCAGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGTAGATTTAACATTACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGGTTGTAATATAG

Protein sequence

MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISCEGCNTFEVVI

Homology

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BLAST of CsGy1G007660 vs. NCBI nr
Match: XP_011651131.1 (PREDICTED: uncharacterized protein LOC101216926 [Cucumis sativus] >KGN64242.1 hypothetical protein Csa_1G044910 [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 4.5e-113
Identity = 210/266 (78.95%), Postives = 211/266 (79.32%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ----------------------------- 60
           MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ                             
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  --------------------------KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
                                     KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 212
           KFWCP+CKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

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BLAST of CsGy1G007660 vs. NCBI nr
Match: XP_008437393.1 (PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo])

HSP 1 Score: 404.4 bits (1038), Expect = 2.3e-109
Identity = 203/266 (76.32%), Postives = 209/266 (78.57%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ----------------------------- 60
           ME+D+PNPVIQTRRSSIKTHPRYNNQQSWKQ                             
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  --------------------------KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
                                     KIKDESVND+NENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVD+RQKESE PIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 212
           KFWCP+CKQGELQEN+HFIHCT CGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENSHFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

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BLAST of CsGy1G007660 vs. NCBI nr
Match: XP_023541291.1 (uncharacterized protein LOC111801509 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.2 bits (905), Expect = 6.1e-94
Identity = 176/262 (67.18%), Postives = 193/262 (73.66%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ----------------------------- 60
           MEE  P+ V QT RSSIKTHPRYNN QSWK+                             
Sbjct: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHS 60

Query: 61  ----------------------KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDG 120
                                 KIKDE+ N+  +NL S PE+ DVLWEYEG+HDAY G+G
Sbjct: 61  LDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEG 120

Query: 121 EEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWC 180
           EEILLEMQRIFYEDLNVDL+QKESE PIVTWEDEEDEFLARAVYEHMQL++EK+LEK WC
Sbjct: 121 EEILLEMQRIFYEDLNVDLKQKESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWC 180

Query: 181 PICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVE 212
           PICKQG+LQEN HFIHCTHCG++LNKGNEVTLDLLR RLADVHAEHLDRGCRLKP FC+E
Sbjct: 181 PICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCIE 240

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BLAST of CsGy1G007660 vs. NCBI nr
Match: XP_022955133.1 (uncharacterized protein LOC111457192 isoform X1 [Cucurbita moschata])

HSP 1 Score: 349.4 bits (895), Expect = 8.8e-93
Identity = 175/262 (66.79%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ----------------------------- 60
           MEE  P+ V QT RSSIKTHPRYNN QSWK+                             
Sbjct: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHS 60

Query: 61  ----------------------KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDG 120
                                 KIKDE+ N+  +NLPS PE+ DVLWEYEG+HDAY G+G
Sbjct: 61  LDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLPSAPESDDVLWEYEGLHDAYGGEG 120

Query: 121 EEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWC 180
           EEILLEMQRIFYEDLNVDL+QKESE PIVTWEDEEDEFLARAVYEHMQL++EK L K WC
Sbjct: 121 EEILLEMQRIFYEDLNVDLKQKESEGPIVTWEDEEDEFLARAVYEHMQLNSEKDLGKLWC 180

Query: 181 PICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVE 212
           PICKQG+LQEN HFIHCTHCG++LNKGNEVTLDLLR RLADVHAEHLDRGCRL+P FCVE
Sbjct: 181 PICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLRPMFCVE 240

[Close]

BLAST of CsGy1G007660 vs. NCBI nr
Match: XP_022994657.1 (uncharacterized protein LOC111490304 isoform X1 [Cucurbita maxima])

HSP 1 Score: 343.6 bits (880), Expect = 4.8e-91
Identity = 173/262 (66.03%), Postives = 189/262 (72.14%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ----------------------------- 60
           MEE  P+ V QT RSSIKTHPRYNN QSWK+                             
Sbjct: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLKENCCKRVREGRNRLLWKMRSPGYLHS 60

Query: 61  ----------------------KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDG 120
                                 KIKDE+ N+  +NL S PE+ D LWEYEG+HDAY G+G
Sbjct: 61  LDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDALWEYEGLHDAYAGEG 120

Query: 121 EEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWC 180
           EEILLEMQRIFYEDLNVDL+QKESE PIVTWEDEED+FLARAVYEHMQL++EK L K WC
Sbjct: 121 EEILLEMQRIFYEDLNVDLKQKESEGPIVTWEDEEDKFLARAVYEHMQLNSEKDLGKLWC 180

Query: 181 PICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVE 212
           PICKQG+LQEN HFIHCTHCG++LNKGNEVTLDLLR RLADVHAEHLDRGCRLKP FCVE
Sbjct: 181 PICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCVE 240

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BLAST of CsGy1G007660 vs. TAIR10
Match: AT4G12760.1 (unknown protein)

HSP 1 Score: 195.3 bits (495), Expect = 3.8e-50
Identity = 96/182 (52.75%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 31  QKIKDESVNDYNENLPSVPEAADVLWEY-EGIHDAYEGDGEEILLEMQRIFYEDLNVDLR 90
           +KI+D S N  + N     +  D+LWEY EG+   YEGD EEILLEMQ+IFY+DL  +  
Sbjct: 78  KKIEDSSRN-LSGNKTLTEDCDDILWEYEEGLKGVYEGDSEEILLEMQQIFYKDLLSETN 137

Query: 91  QKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPICKQGELQENNHFIHCTHC 150
              S   + TWEDEED++LA  V ++M L++E+   + WCPICK+GEL EN+  I C  C
Sbjct: 138 VNGSFVQVETWEDEEDDYLAALVSQNMCLNSEQEESQIWCPICKKGELMENHRHIDCNMC 197

Query: 151 GLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISCEGCNTFEV 210
            ++LNKG EV L++L+ RLA+ H EHL RGCRLKP+F V+S +N+ ALYI+CE C TFEV
Sbjct: 198 DMQLNKGEEVNLNILQERLAEAHGEHLQRGCRLKPEFSVQSVYNLKALYITCEACKTFEV 257

Query: 211 VI 212
           V+
Sbjct: 258 VV 258

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BLAST of CsGy1G007660 vs. TrEMBL
Match: tr|A0A0A0LTY4|A0A0A0LTY4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044910 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 3.0e-113
Identity = 210/266 (78.95%), Postives = 211/266 (79.32%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ----------------------------- 60
           MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ                             
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  --------------------------KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
                                     KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 212
           KFWCP+CKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

[Close]

BLAST of CsGy1G007660 vs. TrEMBL
Match: tr|A0A1S3AU18|A0A1S3AU18_CUCME (uncharacterized protein LOC103482820 OS=Cucumis melo OX=3656 GN=LOC103482820 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.5e-109
Identity = 203/266 (76.32%), Postives = 209/266 (78.57%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQ----------------------------- 60
           ME+D+PNPVIQTRRSSIKTHPRYNNQQSWKQ                             
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  --------------------------KIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120
                                     KIKDESVND+NENLPSVPEAADVLWEYEGIHDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180
           EGDGEEILLEMQRIFYEDLNVD+RQKESE PIVTWEDEEDEFLARAVYEHMQLSNEKILE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KFWCPICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 212
           KFWCP+CKQGELQEN+HFIHCT CGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK
Sbjct: 181 KFWCPMCKQGELQENSHFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

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BLAST of CsGy1G007660 vs. TrEMBL
Match: tr|A0A2I4GEJ5|A0A2I4GEJ5_9ROSI (uncharacterized protein LOC109007202 isoform X1 OS=Juglans regia OX=51240 GN=LOC109007202 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-66
Identity = 121/181 (66.85%), Postives = 151/181 (83.43%), Query Frame = 0


Query: 31  QKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDGEEILLEMQRIFYEDLNVDLRQ 90
           +KIKD S+ND +E L S PEA DVLWEY+G+ +AY+G+ EEILLEMQRIFY+DL V+  +
Sbjct: 99  RKIKDSSLNDCSEFLTSAPEANDVLWEYDGLCNAYQGECEEILLEMQRIFYDDLGVEPTR 158

Query: 91  KESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPICKQGELQENNHFIHCTHCG 150
           KE +  + TWE+EEDE+LARAVYEHMQL++E++ EK WCPICKQGEL EN   I+C+ C 
Sbjct: 159 KEPDSHVETWEEEEDEYLARAVYEHMQLNDEQVCEKIWCPICKQGELLENYLLIYCSLCE 218

Query: 151 LRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISCEGCNTFEVV 210
           L+LNK NEV+LDL+R RLA+ HAEHLDRGCRLKPKFC+E+RF++TALYI C  CN FEVV
Sbjct: 219 LKLNKDNEVSLDLMRVRLAEAHAEHLDRGCRLKPKFCMETRFDLTALYICCPSCNIFEVV 278

Query: 211 I 212
           +
Sbjct: 279 M 279

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BLAST of CsGy1G007660 vs. TrEMBL
Match: tr|M5W481|M5W481_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa010845mg PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.1e-66
Identity = 128/217 (58.99%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 13  RRSSIKTHPRYNNQQSWKQ-----------------KIKDESVNDYNENLPSVPEAADVL 72
           R+ S+K HP +NN  SWK                  KIKD S++D      SVPE  DVL
Sbjct: 17  RKHSLKPHPIFNNYNSWKHKDLIKSAFQDIVSAELGKIKDSSLDDNTRISKSVPEGNDVL 76

Query: 73  WEYEGIHDAYEGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEH 132
           WEYEG+ DAY+GD EE+LLEMQRIFY+DL  +   KE+E  + TWEDEEDE+LA+AV+EH
Sbjct: 77  WEYEGLTDAYQGDCEEMLLEMQRIFYQDLRTEPTTKETEIRVETWEDEEDEYLAQAVFEH 136

Query: 133 MQLSNEKI-LEKFWCPICKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAE 192
           MQL+++++  E+ WCPICK G LQEN H I+C+ C ++LNKG+EV L+LLR RLA+VHAE
Sbjct: 137 MQLNDKQLRKEEVWCPICKHGVLQENYHLIYCSLCEIQLNKGDEVNLELLRGRLAEVHAE 196

Query: 193 HLDRGCRLKPKFCVESRFNITALYISCEGCNTFEVVI 212
           H DRGC LKPKFC+E+RFNITALYI C  CNTFE+VI
Sbjct: 197 HFDRGCTLKPKFCIETRFNITALYILCAACNTFEIVI 233

[Close]

BLAST of CsGy1G007660 vs. TrEMBL
Match: tr|A0A061DMM5|A0A061DMM5_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_002533 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.9e-64
Identity = 130/259 (50.19%), Postives = 165/259 (63.71%), Query Frame = 0


Query: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWK------------------------------ 60
           ME+D P      +R S+KTHP++NN   WK                              
Sbjct: 1   MEDDCPT----IKRRSLKTHPQFNNYSFWKDKVRENCYKRVREDRTRLLWKMRSPAAQSL 60

Query: 61  ------------------QKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDGEEI 120
                             +KIKD S++D  E+  SVP+A D LWEY G+ DAY+G+ EE+
Sbjct: 61  IDKEFIKSTFQEIVSDELKKIKDSSLSDCLESSNSVPKATDELWEYNGLQDAYQGECEEL 120

Query: 121 LLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPIC 180
           LLEMQRIFYEDL  +  +KE ED I TW DEEDE+LARAV EHMQL +E++ ++ WCPIC
Sbjct: 121 LLEMQRIFYEDLRTEPARKEPEDQIKTWADEEDEYLARAVSEHMQLKDEQVHKQIWCPIC 180

Query: 181 KQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRF 212
           KQGELQ+ +  I+CT C L+LN+ +EV LD+LR RLA+ H +HLDRGCRLKPKFC+E+RF
Sbjct: 181 KQGELQQKHQLIYCTLCNLQLNRDDEVNLDILRDRLAEAHDDHLDRGCRLKPKFCLETRF 240

The following BLAST results are available for this feature:

BLAST of CsGy1G007660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651131.1	4.5e-113	78.95	PREDICTED: uncharacterized protein LOC101216926 [Cucumis sativus] >KGN64242.1 hy...	[more]
XP_008437393.1	2.3e-109	76.32	PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo]	[more]
XP_023541291.1	6.1e-94	67.18	uncharacterized protein LOC111801509 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022955133.1	8.8e-93	66.79	uncharacterized protein LOC111457192 isoform X1 [Cucurbita moschata]	[more]
XP_022994657.1	4.8e-91	66.03	uncharacterized protein LOC111490304 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy1G007660 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12760.1	3.8e-50	52.75	unknown protein	[more]

BLAST of CsGy1G007660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G007660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTY4\|A0A0A0LTY4_CUCSA	3.0e-113	78.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044910 PE=4 SV=1	[more]
tr\|A0A1S3AU18\|A0A1S3AU18_CUCME	1.5e-109	76.32	uncharacterized protein LOC103482820 OS=Cucumis melo OX=3656 GN=LOC103482820 PE=...	[more]
tr\|A0A2I4GEJ5\|A0A2I4GEJ5_9ROSI	1.6e-66	66.85	uncharacterized protein LOC109007202 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|M5W481\|M5W481_PRUPE	2.1e-66	58.99	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa010845mg PE=4 SV=1	[more]
tr\|A0A061DMM5\|A0A061DMM5_THECC	1.9e-64	50.19	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_002533 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028156	RIP
IPR028159	RPA_interact_C_dom
IPR028155	RPA_interact_central

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G007660.1	CsGy1G007660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028155	RPA-interacting protein, central domain	PFAM	PF14767	RPA_interact_M	coord: 50..112 e-value: 1.0E-8 score: 35.5
IPR028159	RPA-interacting protein, C-terminal domain	PFAM	PF14768	RPA_interact_C	coord: 128..209 e-value: 8.1E-21 score: 74.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PRODOM	PD472859		coord: 126..211 e-value: 9.0E-7 score: 125.0
IPR028156	RPA-interacting protein	PANTHER	PTHR31742	FAMILY NOT NAMED	coord: 22..211

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G007660	Cla008352	Watermelon (97103) v1	cgybwmB042
CsGy1G007660	Csa1G044910	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G007660	MELO3C002194	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G007660	ClCG01G014510	Watermelon (Charleston Gray)	cgybwcgB020
CsGy1G007660	CSPI01G07830	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G007660	CmaCh18G001180	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G007660	CmoCh18G000930	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G007660	Lsi02G002990	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G007660	Cp4.1LG09g10730	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G007660	MELO3C002194.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G007660	CsaV3_1G007790	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G007660	Cla97C01G013540	Watermelon (97103) v2	cgybwmbB010
CsGy1G007660	Bhi08G001153	Wax gourd	cgybwgoB025
CsGy1G007660	Carg06674	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G007660	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G007660	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G007660	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G007660	Silver-seed gourd	carcgybB0991