Cp4.1LG09g10730 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g10730
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRPA-interacting protein A
LocationCp4.1LG09 : 9321539 .. 9325017 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCGTCGATGCATAATTCGCGGCCGGAATTAAAATGTTGAAGGTCACCGCTTCCACATGAAGAGAGGACCGTTCATTAGTTGAGGGCAAATTTCTGTATCGTAGCGGAAAAGAAGCAGTGAAAATGGAGGAGAAGGATCCAGATTCCGTCACTCAAACGCATCGTTCTTCGATTAAGACTCATCCTCGTTACAACAATCATCAGTCATGGAAGGAGAAGGTGAATTTTCTCTTTTCTTGATGCCAATTGTTTTGTGTTTCTTGCGGGATATATGATCAATTAGAAGAAGAAGAATAATGTATTCGTTAATTTTATTCGAAATTGATAATTTTACTGTGATTAGCTGAGGGAGAACTGTTGCAAGAGGGTCAGAGAAGGAAGAAACCGCTTGCTCTGGAAGATGAGGTCGCCCGGTTATCTCCATTCTCTCGATGATCGGCAGCAGGTTAGGTTTTGTAAATATTTTTGTAATATTTACGATTTCAACAATTAGTTGTTGGATGTTGTGGAGAAGGACATTGATGTTATATGTTGCTCTTTGTTATGTAATTTGCATGTGTTTTTCTGGATTTTGGTTGGTTGTAGGATTTCATCAGATCTTCTTTTCAAGATATATTTTCTGATGAGCTGAAAAAGATTAAAGACGAAGCTGAGAATGAATGTTATAAGAATTTAACCTCTGCTCCCGAGTCTGATGATGTTCTTTGGGAATATGAGGGGCTTCATGATGCTTATGGAGGTGAAGGTGAAGAAATTTTGTTGGAAATGCAAAGGATTTTTTATGAGGATTTGAATGTTGATCTGAAACAAAAAGGTGATTTTTCTAACACCATTCTATATGTTGATGTTCATTGGCTTCATTGACTGTATCTGTAGCTACCGAAGCTCTCCGCTAGTTGATATTGCCTTTTTTAGATTTTTCCTTGCTTCCCCTCAAAGTTTTAAAACGCATCGGCTAGGGAGAAGTTTCCACATCCTTATAAAATATGTTTCGTTCCCCTCTCCAATCGACGTGGGATCTCACAATCCACTTCCTTCAGGGTCTAGTGTCCTCGCTAGCACTCGTTCCCCTCTCTAATTGATGTGGAACCCCCCAATCCATCCTCTTCGAGGCTCAACCTCCTCGCTGGCACATAACCCGGTGTCTAACTCTGATACTATTTGTAACAGCCCAAGCTCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTCCAGACTTCCCCTCAATGTTTTAAAACGCGTCTACTATAGAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTCCTACAACCGATGTGGGATCTCACAGTATCAAAGCAGCAGTAAGCAGGCTTTGTCTTCCGGGGAATAAATGATTTGTAATGTTTTGAGGAAACTTTGTTCGGGTTGTCATTAATTGAGATTGATTTTTGTTTGTTAAGTTCATGCAACAAATAGTCAATGTGAAGTACTAATTGAACTAGTGCTATTGTTGTCATCTGTTCTTTTAGCAGGCTCTGTTATAATAGAGCCATGGTTATTGATCTTCTCTGGTAGTATTTAAGCTGTTAAAATCACTATTTTGAGTAGGATGTTTACTCAGCTCCTTGCAGAATCTGAAGGCCCTATTGTAACATGGGAAGACGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAACATATGCAACTTAACAGTGAGAAGGTTGGTTTTTATCTTGATTCTTGAGGGCTGTAATTAACTTGAAATTTTGGATGCCTTTAGGCATTCTTATTAACTAGATCTTACATTTACATTGCTAAAGCGTGGTTTATTCTTAAAACAATCCCAAATTTACATTTCCCTTTTATCTATTTTGAATGTCTTGTTAGGTTCTTGAGAAGTTATGGTGTCCTATTTGTAAACAAGGAGATCTGCAAGAGAACAAACACTTCATACATTGCACTCACTGTGGAGTTCAGCTTAACAAAGGCAATGAGGTTTTCCACTAATTTGATCTTAAGAGCTTATAGTCCACCATCCTCATCTTAATCCCATGTCCATATTAAGATATTTGATGGTTACTATGGTTAGAAACTACAGATCTTCACAATGGTATGATATCGCCCACGTTAAGCATAAGCTCTCATGAATTTGCTTTTGGTTTCCCCAAAATGCCTCATAACATTGGAGATGTATTCATTACTTATAAACCCATGATCATCCCCCTTAATTAGCCTACATGGGACTCCCTCTCAACAATCCATAACAATCCTCTCCTCGAACAAAGTACACTATAGAGCCTCCCTTGAGGTTTATGTAGCCCTCGACCAGTCTTTCCTTAATCGAAATTCGACTATTTTCTCTAGAGCCTTTGAACAAAGTACACCATTTGTTCGATACTTGAGTCACTTTTGACTACATCTTTGAGGCTAGCAACTTTGTTCAACCCTTGAGGATTCTATTGACATGACTAAGCTAAGGGCATGGTTTTGATACCATGTTAGAAATCACAAACCTCTACAATGGTATGACATTGTCCACTTTGAGCATAAGCTCTCATAGATTAGCTTTTGGTTCCCCTAAAAGACCTCGTTCTAGTGGAGACGTATTCATTACTTATAAACCAATGATCATCCCCTTAATTAGCCAATGTGGGACTCCCTCCCAACCATCCTCAACAACTACTACCATATAATATTTATTGTTTTAGAATTCAGCGACACAGTAGTACAATCTATAGAACAAATCCTGTTCAAGCAACGTCGTGACATTATTAGATAATACGTTGGCTGAGTATTTATATTTAGAAATTGTGGTTGCTATCTTTTTATAACTTGTCAGATCATTGCCTGTGACTTTGATATATGATCTCATGATGGGGCTTAATAAATCTGATTATCTTGAGCTGCTGTGGCCCCATTGGCCATGCCTGGAATTGAATAACTTGTCGAATAACAGGGTGATGTTTAGAAAGAAAAAGTAAAATTGATGTGAAAATTTCGACATGATTCGAATGCTTGATCGAAACGAAACAACCGTTGTTTATCTCTACAGTCTTTTAATTACTAGTTCTATGGCCTTTCAGGTTACTCTGGACCTCCTCCGTTCCCGGTTGGCCGATGTGCATGCTGAACATCTCGATCGAGGTTGCAGGTTGAAACCTATGTTTTGTATTGAGAGTAGATTTAACATAACTGCATTATATATCTCTTGTAAAGGCTGCAACACATTTGAGGTTGTCATATAGCATTGTTAAGAAACAGAGCCCTTCAGGTTCAGTTGTGTGATTAAAATTGGTTTTATTAGTTATGACAGAATGATGACCAACATTTTTTATGGGTAACATAGCATGTGTGAAGAATCAGGTGTCTCTAACGCCTGCCATCGTACCAGAACTAACAGTCTGTTGCTCGGGGCTGATTTGTTCGGTAGGTTGTACAACTATGTTCTCGAGTTCTAAAGAATCGGGTTTCCTAGGTTTTATGATTAAAATTACTTTTACTAGAAA

mRNA sequence

CGCCGTCGATGCATAATTCGCGGCCGGAATTAAAATGTTGAAGGTCACCGCTTCCACATGAAGAGAGGACCGTTCATTAGTTGAGGGCAAATTTCTGTATCGTAGCGGAAAAGAAGCAGTGAAAATGGAGGAGAAGGATCCAGATTCCGTCACTCAAACGCATCGTTCTTCGATTAAGACTCATCCTCGTTACAACAATCATCAGTCATGGAAGGAGAAGCTGAGGGAGAACTGTTGCAAGAGGGTCAGAGAAGGAAGAAACCGCTTGCTCTGGAAGATGAGGTCGCCCGGTTATCTCCATTCTCTCGATGATCGGCAGCAGGATTTCATCAGATCTTCTTTTCAAGATATATTTTCTGATGAGCTGAAAAAGATTAAAGACGAAGCTGAGAATGAATGTTATAAGAATTTAACCTCTGCTCCCGAGTCTGATGATGTTCTTTGGGAATATGAGGGGCTTCATGATGCTTATGGAGGTGAAGGTGAAGAAATTTTGATGTTTACTCAGCTCCTTGCAGAATCTGAAGGCCCTATTGTAACATGGGAAGACGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAACATATGCAACTTAACAGTGAGAAGGTTCTTGAGAAGTTATGGTGTCCTATTTGTAAACAAGGAGATCTGCAAGAGAACAAACACTTCATACATTGCACTCACTGTGGAGTTCAGCTTAACAAAGGCAATGAGGTTACTCTGGACCTCCTCCGTTCCCGGTTGGCCGATGTGCATGCTGAACATCTCGATCGAGGTTGCAGGTTGAAACCTATGTTTTGTATTGAGAGTAGATTTAACATAACTGCATTATATATCTCTTGTAAAGGCTGCAACACATTTGAGGTTGTCATATAGCATTGTTAAGAAACAGAGCCCTTCAGGTTCAGTTGTGTGATTAAAATTGGTTTTATTAGTTATGACAGAATGATGACCAACATTTTTTATGGGTAACATAGCATGTGTGAAGAATCAGGTGTCTCTAACGCCTGCCATCGTACCAGAACTAACAGTCTGTTGCTCGGGGCTGATTTGTTCGGTAGGTTGTACAACTATGTTCTCGAGTTCTAAAGAATCGGGTTTCCTAGGTTTTATGATTAAAATTACTTTTACTAGAAA

Coding sequence (CDS)

ATGGAGGAGAAGGATCCAGATTCCGTCACTCAAACGCATCGTTCTTCGATTAAGACTCATCCTCGTTACAACAATCATCAGTCATGGAAGGAGAAGCTGAGGGAGAACTGTTGCAAGAGGGTCAGAGAAGGAAGAAACCGCTTGCTCTGGAAGATGAGGTCGCCCGGTTATCTCCATTCTCTCGATGATCGGCAGCAGGATTTCATCAGATCTTCTTTTCAAGATATATTTTCTGATGAGCTGAAAAAGATTAAAGACGAAGCTGAGAATGAATGTTATAAGAATTTAACCTCTGCTCCCGAGTCTGATGATGTTCTTTGGGAATATGAGGGGCTTCATGATGCTTATGGAGGTGAAGGTGAAGAAATTTTGATGTTTACTCAGCTCCTTGCAGAATCTGAAGGCCCTATTGTAACATGGGAAGACGAAGAAGACGAGTTCTTAGCCCGTGCAGTTTACGAACATATGCAACTTAACAGTGAGAAGGTTCTTGAGAAGTTATGGTGTCCTATTTGTAAACAAGGAGATCTGCAAGAGAACAAACACTTCATACATTGCACTCACTGTGGAGTTCAGCTTAACAAAGGCAATGAGGTTACTCTGGACCTCCTCCGTTCCCGGTTGGCCGATGTGCATGCTGAACATCTCGATCGAGGTTGCAGGTTGAAACCTATGTTTTGTATTGAGAGTAGATTTAACATAACTGCATTATATATCTCTTGTAAAGGCTGCAACACATTTGAGGTTGTCATATAG

Protein sequence

MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHSLDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEGEEILMFTQLLAESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWCPICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCIESRFNITALYISCKGCNTFEVVI
Homology
[Close]
BLAST of Cp4.1LG09g10730 vs. Swiss-Prot
Match: RIPA_XENLA (RPA-interacting protein A OS=Xenopus laevis GN=rpain-a PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 57/236 (24.15%), Postives = 105/236 (44.49%), Query Frame = 1 

Query: 29  WKEKLRENCCKRVREGRNRLLWKMRSPGYLHSLDDRQQDFIRSSF--QDIFSDELKKIKD 88
           WKE  R+ C +R++  R++LL K R  G      +R    +  SF  Q++  +E K +  
Sbjct: 18  WKETYRKRCVERLKRNRSKLLDKFRQVG------ERIHGGVGGSFLVQEVMEEEWKAM-- 77

Query: 89  EAENECYKNLTSAPESDDVLWEYEGLHDAYG--GEGEEILMF----TQLLAESEGPIVTW 148
           ++EN  + +          +W+ E    A     + +E+        +LL E +  I   
Sbjct: 78  QSENGSFPS----------MWKKEAFSQALNIMRDPDELATLEEIKQELLLEEKAMI--- 137

Query: 149 EDEEDEFLARAVYEHMQLNSEKVL---EKLWCPICKQGDLQENKHFIHCTHCGVQLNKGN 208
               +EF     +E   L+S   L   +++ CP+C +  L     FI C  CGV +N  +
Sbjct: 138 ----EEFENILQFEEQCLDSVVELSTGDQIVCPVCNRNYLTVTSCFIVC-QCGVYINTQS 197

Query: 209 E-VTLDLLRSRLADVHAEHLDRGCRLKPMFCIESRF-NITALYISCKGCNTFEVVI 252
           + ++++ L S L      H    C   P+F + +      +L++SC+ C+   V++
Sbjct: 198 QGMSIEKLHSLLESSLTSH-GYHCTKLPVFSVATELGGAASLFMSCQECDAMVVIL 226

[Close]
BLAST of Cp4.1LG09g10730 vs. TrEMBL
Match: A0A0A0LTY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G044910 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.5e-113
Identity = 201/266 (75.56%), Postives = 226/266 (84.96%), Query Frame = 1 

Query: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMR----SPG 60
           MEE  P+ V QT RSSIKTHPRYNN QSWK+KLRENCCKRVREGR+RLLWKMR    SP 
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YLHSLDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAY 120
           Y HSL++RQQD I+S+FQDIF+DELKKIKDE+ N+  +NL S PE+ DVLWEYEG+HDAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 GGEGEEILMFTQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLE 180
            G+GEEIL+  Q +            ESE PIVTWEDEEDEFLARAVYEHMQL++EK+LE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KLWCPICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPM 240
           K WCP+CKQG+LQEN HFIHCTHCG++LNKGNEVTLDLLR RLADVHAEHLDRGCRLKP 
Sbjct: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCIESRFNITALYISCKGCNTFEVVI 252
           FC+ESRFNITALYISC+GCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 266

[Close]
BLAST of Cp4.1LG09g10730 vs. TrEMBL
Match: A0A061DMM5_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_002533 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 144/256 (56.25%), Postives = 184/256 (71.88%), Query Frame = 1 

Query: 7   DSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHSLDDRQQ 66
           D      R S+KTHP++NN+  WK+K+RENC KRVRE R RLLWKMRSP     +D   +
Sbjct: 3   DDCPTIKRRSLKTHPQFNNYSFWKDKVRENCYKRVREDRTRLLWKMRSPAAQSLID---K 62

Query: 67  DFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEGEEILMF 126
           +FI+S+FQ+I SDELKKIKD + ++C ++  S P++ D LWEY GL DAY GE EE+L+ 
Sbjct: 63  EFIKSTFQEIVSDELKKIKDSSLSDCLESSNSVPKATDELWEYNGLQDAYQGECEELLLE 122

Query: 127 TQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWCPICKQG 186
            Q +            E E  I TW DEEDE+LARAV EHMQL  E+V +++WCPICKQG
Sbjct: 123 MQRIFYEDLRTEPARKEPEDQIKTWADEEDEYLARAVSEHMQLKDEQVHKQIWCPICKQG 182

Query: 187 DLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCIESRFNIT 246
           +LQ+    I+CT C +QLN+ +EV LD+LR RLA+ H +HLDRGCRLKP FC+E+RF +T
Sbjct: 183 ELQQKHQLIYCTLCNLQLNRDDEVNLDILRDRLAEAHDDHLDRGCRLKPKFCLETRFGLT 242

Query: 247 ALYISCKGCNTFEVVI 252
           ALYI C+ CNTFEVVI
Sbjct: 243 ALYILCQDCNTFEVVI 255

[Close]
BLAST of Cp4.1LG09g10730 vs. TrEMBL
Match: A0A061DUL2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_002533 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.2e-76
Identity = 144/257 (56.03%), Postives = 184/257 (71.60%), Query Frame = 1 

Query: 7   DSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHSLDDRQQ 66
           D      R S+KTHP++NN+  WK+K+RENC KRVRE R RLLWKMRSP     +D   +
Sbjct: 3   DDCPTIKRRSLKTHPQFNNYSFWKDKVRENCYKRVREDRTRLLWKMRSPAAQSLID---K 62

Query: 67  DFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEGEEILMF 126
           +FI+S+FQ+I SDELKKIKD + ++C ++  S P++ D LWEY GL DAY GE EE+L+ 
Sbjct: 63  EFIKSTFQEIVSDELKKIKDSSLSDCLESSNSVPKATDELWEYNGLQDAYQGECEELLLE 122

Query: 127 TQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWCPICKQG 186
            Q +            E E  I TW DEEDE+LARAV EHMQL  E+V +++WCPICKQG
Sbjct: 123 MQRIFYEDLRTEPARKEPEDQIKTWADEEDEYLARAVSEHMQLKDEQVHKQIWCPICKQG 182

Query: 187 DLQENKHFIHCTHCGVQLNKGNE-VTLDLLRSRLADVHAEHLDRGCRLKPMFCIESRFNI 246
           +LQ+    I+CT C +QLN+ +E V LD+LR RLA+ H +HLDRGCRLKP FC+E+RF +
Sbjct: 183 ELQQKHQLIYCTLCNLQLNRDDEVVNLDILRDRLAEAHDDHLDRGCRLKPKFCLETRFGL 242

Query: 247 TALYISCKGCNTFEVVI 252
           TALYI C+ CNTFEVVI
Sbjct: 243 TALYILCQDCNTFEVVI 256

[Close]
BLAST of Cp4.1LG09g10730 vs. TrEMBL
Match: A0A0B0NLC6_GOSAR (RPA-interacting B OS=Gossypium arboreum GN=F383_17311 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.1e-76
Identity = 144/262 (54.96%), Postives = 187/262 (71.37%), Query Frame = 1 

Query: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHS 60
           ME K  D+     R S+KTHPR+NN+  WK KLRENC KRVRE R RLLWKMR P    S
Sbjct: 1   MERKMEDTCPIIQRPSLKTHPRFNNYSLWKHKLRENCYKRVREDRTRLLWKMRLPA-AQS 60

Query: 61  LDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEG 120
           L+ ++  FI+++FQDI SDELKKIK    ++C ++  S   + D LWEY GL DAY GE 
Sbjct: 61  LNHKE--FIKTAFQDIVSDELKKIKGSPISDCLESSNSVSSAPDELWEYSGLQDAYQGEC 120

Query: 121 EEILMFTQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWC 180
           EEIL+  Q +            E +  I +WEDE+DE+LARAVYEHMQLN E+V +++WC
Sbjct: 121 EEILLEMQRIFYEDLRREPAGKEPKEGIESWEDEQDEYLARAVYEHMQLNDEQVQKQIWC 180

Query: 181 PICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCIE 240
           PICK+G+LQ+N   I+CT C +QLN+ +EV LD+LR RLA+ H +HL+RGCRLKP FC+E
Sbjct: 181 PICKRGELQQNHQLIYCTLCKLQLNRDDEVNLDVLRDRLAEAHVDHLERGCRLKPKFCLE 240

Query: 241 SRFNITALYISCKGCNTFEVVI 252
           ++F +TALYI C+ C+TFE+VI
Sbjct: 241 TKFGLTALYILCQDCSTFEIVI 259

[Close]
BLAST of Cp4.1LG09g10730 vs. TrEMBL
Match: A0A0D2N3Z6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G225800 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 143/262 (54.58%), Postives = 187/262 (71.37%), Query Frame = 1 

Query: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHS 60
           ME K  D+     R S+KTHPR+NN+  WK KLRENC KRVRE R RLLWKMR P    +
Sbjct: 1   MEPKMEDTCPIIQRPSLKTHPRFNNYSLWKHKLRENCYKRVREDRTRLLWKMRLPA---A 60

Query: 61  LDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEG 120
                ++FI+++FQDI SDELK+IKD   ++C ++  S   + D LWEY GL DAY GE 
Sbjct: 61  QSFNHKEFIKTAFQDIVSDELKRIKDSPISDCLESSNSVSSAPDELWEYSGLQDAYQGEC 120

Query: 121 EEILMFTQLL---------AESEGP--IVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWC 180
           EEIL+  Q +         AE E    I +WEDE+DE+LARAVYEHMQLN E+V +++WC
Sbjct: 121 EEILLEMQRIFYEDLRREPAEKEPKEGIESWEDEQDEYLARAVYEHMQLNDEQVQKQIWC 180

Query: 181 PICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCIE 240
           PICK+G+LQ+N   I+CT C +QLN+ +EV L++LR RLA+ H +HL+RGCRLKP FC+E
Sbjct: 181 PICKRGELQQNHQLIYCTLCKLQLNRDDEVNLEVLRDRLAEAHVDHLERGCRLKPKFCLE 240

Query: 241 SRFNITALYISCKGCNTFEVVI 252
           ++F +TALYI C+ C+TFE+VI
Sbjct: 241 TKFGLTALYILCQDCSTFEIVI 259

[Close]
BLAST of Cp4.1LG09g10730 vs. TAIR10
Match: AT4G12760.1 (AT4G12760.1 unknown protein)

HSP 1 Score: 228.4 bits (581), Expect = 4.9e-60
Identity = 127/263 (48.29%), Postives = 170/263 (64.64%), Query Frame = 1 

Query: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHS 60
           ME+    + T   R+S K+ P ++ +   K+K RENC +RVRE R RLLWK+R      S
Sbjct: 1   MEKLAKTASTIPKRTSNKSQPDFD-YSIRKQKFRENCFRRVREDRTRLLWKLRISDCQSS 60

Query: 61  LDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYE-GLHDAYGGE 120
               Q++ I  +FQDI SDELKKI+D + N    N T   + DD+LWEYE GL   Y G+
Sbjct: 61  ---DQKEIINCAFQDIVSDELKKIEDSSRN-LSGNKTLTEDCDDILWEYEEGLKGVYEGD 120

Query: 121 GEEILM------FTQLLAESE--GPIV---TWEDEEDEFLARAVYEHMQLNSEKVLEKLW 180
            EEIL+      +  LL+E+   G  V   TWEDEED++LA  V ++M LNSE+   ++W
Sbjct: 121 SEEILLEMQQIFYKDLLSETNVNGSFVQVETWEDEEDDYLAALVSQNMCLNSEQEESQIW 180

Query: 181 CPICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCI 240
           CPICK+G+L EN   I C  C +QLNKG EV L++L+ RLA+ H EHL RGCRLKP F +
Sbjct: 181 CPICKKGELMENHRHIDCNMCDMQLNKGEEVNLNILQERLAEAHGEHLQRGCRLKPEFSV 240

Query: 241 ESRFNITALYISCKGCNTFEVVI 252
           +S +N+ ALYI+C+ C TFEVV+
Sbjct: 241 QSVYNLKALYITCEACKTFEVVV 258

[Close]
BLAST of Cp4.1LG09g10730 vs. NCBI nr
Match: gi|659067046|ref|XP_008437393.1| (PREDICTED: uncharacterized protein LOC103482820 isoform X1 [Cucumis melo])

HSP 1 Score: 419.1 bits (1076), Expect = 5.5e-114
Identity = 202/266 (75.94%), Postives = 228/266 (85.71%), Query Frame = 1 

Query: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMR----SPG 60
           ME+ +P+ V QT RSSIKTHPRYNN QSWK+KLRENCCKRVREGR+RLLWKMR    SP 
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YLHSLDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAY 120
           Y HSL++RQQDFI+S+FQDIFSDELKKIKDE+ N+  +NL S PE+ DVLWEYEG+HDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 GGEGEEILMFTQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLE 180
            G+GEEIL+  Q +            ESEGPIVTWEDEEDEFLARAVYEHMQL++EK+LE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KLWCPICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPM 240
           K WCP+CKQG+LQEN HFIHCT CG++LNKGNEVTLDLLR RLADVHAEHLDRGCRLKP 
Sbjct: 181 KFWCPMCKQGELQENSHFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCIESRFNITALYISCKGCNTFEVVI 252
           FC+ESRFNITALYISC+GCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 266

[Close]
BLAST of Cp4.1LG09g10730 vs. NCBI nr
Match: gi|778657584|ref|XP_011651131.1| (PREDICTED: uncharacterized protein LOC101216926 [Cucumis sativus])

HSP 1 Score: 417.2 bits (1071), Expect = 2.1e-113
Identity = 201/266 (75.56%), Postives = 226/266 (84.96%), Query Frame = 1 

Query: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMR----SPG 60
           MEE  P+ V QT RSSIKTHPRYNN QSWK+KLRENCCKRVREGR+RLLWKMR    SP 
Sbjct: 1   MEEDSPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YLHSLDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAY 120
           Y HSL++RQQD I+S+FQDIF+DELKKIKDE+ N+  +NL S PE+ DVLWEYEG+HDAY
Sbjct: 61  YSHSLNNRQQDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 GGEGEEILMFTQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLE 180
            G+GEEIL+  Q +            ESE PIVTWEDEEDEFLARAVYEHMQL++EK+LE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDLRQKESEDPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KLWCPICKQGDLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPM 240
           K WCP+CKQG+LQEN HFIHCTHCG++LNKGNEVTLDLLR RLADVHAEHLDRGCRLKP 
Sbjct: 181 KFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPK 240

Query: 241 FCIESRFNITALYISCKGCNTFEVVI 252
           FC+ESRFNITALYISC+GCNTFEVVI
Sbjct: 241 FCVESRFNITALYISCEGCNTFEVVI 266

[Close]
BLAST of Cp4.1LG09g10730 vs. NCBI nr
Match: gi|659067048|ref|XP_008437401.1| (PREDICTED: uncharacterized protein LOC103482820 isoform X2 [Cucumis melo])

HSP 1 Score: 310.8 bits (795), Expect = 2.1e-81
Identity = 151/211 (71.56%), Postives = 175/211 (82.94%), Query Frame = 1 

Query: 1   MEEKDPDSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMR----SPG 60
           ME+ +P+ V QT RSSIKTHPRYNN QSWK+KLRENCCKRVREGR+RLLWKMR    SP 
Sbjct: 1   MEDDNPNPVIQTRRSSIKTHPRYNNQQSWKQKLRENCCKRVREGRSRLLWKMRLPMSSPT 60

Query: 61  YLHSLDDRQQDFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAY 120
           Y HSL++RQQDFI+S+FQDIFSDELKKIKDE+ N+  +NL S PE+ DVLWEYEG+HDAY
Sbjct: 61  YPHSLNNRQQDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAY 120

Query: 121 GGEGEEILMFTQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLE 180
            G+GEEIL+  Q +            ESEGPIVTWEDEEDEFLARAVYEHMQL++EK+LE
Sbjct: 121 EGDGEEILLEMQRIFYEDLNVDMRQKESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILE 180

Query: 181 KLWCPICKQGDLQENKHFIHCTHCGVQLNKG 197
           K WCP+CKQG+LQEN HFIHCT CG++LNKG
Sbjct: 181 KFWCPMCKQGELQENSHFIHCTQCGLRLNKG 211

[Close]
BLAST of Cp4.1LG09g10730 vs. NCBI nr
Match: gi|590712896|ref|XP_007049490.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 297.7 bits (761), Expect = 1.9e-77
Identity = 144/256 (56.25%), Postives = 184/256 (71.88%), Query Frame = 1 

Query: 7   DSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHSLDDRQQ 66
           D      R S+KTHP++NN+  WK+K+RENC KRVRE R RLLWKMRSP     +D   +
Sbjct: 3   DDCPTIKRRSLKTHPQFNNYSFWKDKVRENCYKRVREDRTRLLWKMRSPAAQSLID---K 62

Query: 67  DFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEGEEILMF 126
           +FI+S+FQ+I SDELKKIKD + ++C ++  S P++ D LWEY GL DAY GE EE+L+ 
Sbjct: 63  EFIKSTFQEIVSDELKKIKDSSLSDCLESSNSVPKATDELWEYNGLQDAYQGECEELLLE 122

Query: 127 TQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWCPICKQG 186
            Q +            E E  I TW DEEDE+LARAV EHMQL  E+V +++WCPICKQG
Sbjct: 123 MQRIFYEDLRTEPARKEPEDQIKTWADEEDEYLARAVSEHMQLKDEQVHKQIWCPICKQG 182

Query: 187 DLQENKHFIHCTHCGVQLNKGNEVTLDLLRSRLADVHAEHLDRGCRLKPMFCIESRFNIT 246
           +LQ+    I+CT C +QLN+ +EV LD+LR RLA+ H +HLDRGCRLKP FC+E+RF +T
Sbjct: 183 ELQQKHQLIYCTLCNLQLNRDDEVNLDILRDRLAEAHDDHLDRGCRLKPKFCLETRFGLT 242

Query: 247 ALYISCKGCNTFEVVI 252
           ALYI C+ CNTFEVVI
Sbjct: 243 ALYILCQDCNTFEVVI 255

[Close]
BLAST of Cp4.1LG09g10730 vs. NCBI nr
Match: gi|590712899|ref|XP_007049491.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 293.1 bits (749), Expect = 4.6e-76
Identity = 144/257 (56.03%), Postives = 184/257 (71.60%), Query Frame = 1 

Query: 7   DSVTQTHRSSIKTHPRYNNHQSWKEKLRENCCKRVREGRNRLLWKMRSPGYLHSLDDRQQ 66
           D      R S+KTHP++NN+  WK+K+RENC KRVRE R RLLWKMRSP     +D   +
Sbjct: 3   DDCPTIKRRSLKTHPQFNNYSFWKDKVRENCYKRVREDRTRLLWKMRSPAAQSLID---K 62

Query: 67  DFIRSSFQDIFSDELKKIKDEAENECYKNLTSAPESDDVLWEYEGLHDAYGGEGEEILMF 126
           +FI+S+FQ+I SDELKKIKD + ++C ++  S P++ D LWEY GL DAY GE EE+L+ 
Sbjct: 63  EFIKSTFQEIVSDELKKIKDSSLSDCLESSNSVPKATDELWEYNGLQDAYQGECEELLLE 122

Query: 127 TQLL-----------AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLEKLWCPICKQG 186
            Q +            E E  I TW DEEDE+LARAV EHMQL  E+V +++WCPICKQG
Sbjct: 123 MQRIFYEDLRTEPARKEPEDQIKTWADEEDEYLARAVSEHMQLKDEQVHKQIWCPICKQG 182

Query: 187 DLQENKHFIHCTHCGVQLNKGNE-VTLDLLRSRLADVHAEHLDRGCRLKPMFCIESRFNI 246
           +LQ+    I+CT C +QLN+ +E V LD+LR RLA+ H +HLDRGCRLKP FC+E+RF +
Sbjct: 183 ELQQKHQLIYCTLCNLQLNRDDEVVNLDILRDRLAEAHDDHLDRGCRLKPKFCLETRFGL 242

Query: 247 TALYISCKGCNTFEVVI 252
           TALYI C+ CNTFEVVI
Sbjct: 243 TALYILCQDCNTFEVVI 256

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g10730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIPA_XENLA1.7e-0624.15RPA-interacting protein A OS=Xenopus laevis GN=rpain-a PE=1 SV=1[more]
BLAST of Cp4.1LG09g10730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTY4_CUCSA1.5e-11375.56Uncharacterized protein OS=Cucumis sativus GN=Csa_1G044910 PE=4 SV=1[more]
A0A061DMM5_THECC1.3e-7756.25Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_002533 PE=4 SV=1[more]
A0A061DUL2_THECC3.2e-7656.03Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_002533 PE=4 SV=1[more]
A0A0B0NLC6_GOSAR7.1e-7654.96RPA-interacting B OS=Gossypium arboreum GN=F383_17311 PE=4 SV=1[more]
A0A0D2N3Z6_GOSRA1.6e-7554.58Uncharacterized protein OS=Gossypium raimondii GN=B456_001G225800 PE=4 SV=1[more]
BLAST of Cp4.1LG09g10730 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G12760.14.9e-6048.29 unknown protein[more]
BLAST of Cp4.1LG09g10730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067046|ref|XP_008437393.1|5.5e-11475.94PREDICTED: uncharacterized protein LOC103482820 isoform X1 [Cucumis melo][more]
gi|778657584|ref|XP_011651131.1|2.1e-11375.56PREDICTED: uncharacterized protein LOC101216926 [Cucumis sativus][more]
gi|659067048|ref|XP_008437401.1|2.1e-8171.56PREDICTED: uncharacterized protein LOC103482820 isoform X2 [Cucumis melo][more]
gi|590712896|ref|XP_007049490.1|1.9e-7756.25Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|590712899|ref|XP_007049491.1|4.6e-7656.03Uncharacterized protein isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028159RPA_interact_C_dom
IPR028158RPA_interact_N_dom
IPR028156RIP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g10730.1Cp4.1LG09g10730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028156RPA-interacting proteinPANTHERPTHR31742FAMILY NOT NAMEDcoord: 1..251
score: 4.8
IPR028158RPA-interacting protein, N-terminal domainPFAMPF14766RPA_interact_Ncoord: 13..55
score: 1.7
IPR028159RPA-interacting protein, C-terminal domainPFAMPF14768RPA_interact_Ccoord: 168..249
score: 1.4
NoneNo IPR availablePRODOMPD472859coord: 29..251
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g10730Cucsa.097810Cucumber (Gy14) v1cgycpeB0201
Cp4.1LG09g10730CmaCh18G001180Cucurbita maxima (Rimu)cmacpeB416
Cp4.1LG09g10730Cla008352Watermelon (97103) v1cpewmB038
Cp4.1LG09g10730Csa1G044910Cucumber (Chinese Long) v2cpecuB029
Cp4.1LG09g10730MELO3C002194Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g10730ClCG01G014510Watermelon (Charleston Gray)cpewcgB021
Cp4.1LG09g10730CSPI01G07830Wild cucumber (PI 183967)cpecpiB025
Cp4.1LG09g10730Lsi02G002990Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g10730CsaV3_1G007790Cucumber (Chinese Long) v3cpecucB0031
Cp4.1LG09g10730Bhi08G001153Wax gourdcpewgoB0045
Cp4.1LG09g10730CsGy1G007660Cucumber (Gy14) v2cgybcpeB018
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g10730Silver-seed gourdcarcpeB1394
Cp4.1LG09g10730Cucurbita pepo (Zucchini)cpecpeB049
Cp4.1LG09g10730Cucurbita maxima (Rimu)cmacpeB213
Cp4.1LG09g10730Cucurbita moschata (Rifu)cmocpeB183
Cp4.1LG09g10730Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g10730Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g10730Silver-seed gourdcarcpeB0694