Lsi01G019050 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G019050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 22697795 .. 22698184 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTATGTGTTAGTTTCTCCTCAAGGAGCTGATTTGTTGGTCCAACATCTCAAGCATTGTGATTGGAAAGCAATAGAAGACACTAAAGACCCCTATGTGGAAGACATGGGAAGGTTTGCAGTGGCAAAGTTTACACACCATCATCTAATAGGGGAAATAGCGACGTTCATTCGAGTGGTGAGCAGTGGGAATGTAGTGGTGGAAGAAGGAACAATATTCCGCATCGTGATAGAGATTAGAAAAGAGAACGTAACTCAATCTCACGTAAGTTCTATTGAGTTATATGTAGCTACAGTGTTGGATCATAAATATCCTCTCAAATCTTGGACGGTCTTATCTTTTGAATCTTCTACCCTTCTAGCTCTACCTTCTGGCTTGGCAATTTAA

mRNA sequence

ATGAGTTATGTGTTAGTTTCTCCTCAAGGAGCTGATTTGTTGGTCCAACATCTCAAGCATTGTGATTGGAAAGCAATAGAAGACACTAAAGACCCCTATGTGGAAGACATGGGAAGGTTTGCAGTGGCAAAGTTTACACACCATCATCTAATAGGGGAAATAGCGACGTTCATTCGAGTGGTGAGCAGTGGGAATGTAGTGGTGGAAGAAGGAACAATATTCCGCATCGTGATAGAGATTAGAAAAGAGAACGTAACTCAATCTCACGTAAGTTCTATTGAGTTATATGTAGCTACAGTGTTGGATCATAAATATCCTCTCAAATCTTGGACGGTCTTATCTTTTGAATCTTCTACCCTTCTAGCTCTACCTTCTGGCTTGGCAATTTAA

Coding sequence (CDS)

ATGAGTTATGTGTTAGTTTCTCCTCAAGGAGCTGATTTGTTGGTCCAACATCTCAAGCATTGTGATTGGAAAGCAATAGAAGACACTAAAGACCCCTATGTGGAAGACATGGGAAGGTTTGCAGTGGCAAAGTTTACACACCATCATCTAATAGGGGAAATAGCGACGTTCATTCGAGTGGTGAGCAGTGGGAATGTAGTGGTGGAAGAAGGAACAATATTCCGCATCGTGATAGAGATTAGAAAAGAGAACGTAACTCAATCTCACGTAAGTTCTATTGAGTTATATGTAGCTACAGTGTTGGATCATAAATATCCTCTCAAATCTTGGACGGTCTTATCTTTTGAATCTTCTACCCTTCTAGCTCTACCTTCTGGCTTGGCAATTTAA

Protein sequence

MSYVLVSPQGADLLVQHLKHCDWKAIEDTKDPYVEDMGRFAVAKFTHHHLIGEIATFIRVVSSGNVVVEEGTIFRIVIEIRKENVTQSHVSSIELYVATVLDHKYPLKSWTVLSFESSTLLALPSGLAI
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019050.1Lsi01G019050.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 23..102
score: 3.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 23..116
score: 3.6

The following gene(s) are paralogous to this gene:

None