Lsi01G011110 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G011110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr01 : 9190209 .. 9190642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGAAATTGAATAATGAAAGTGAAGATCTTCCATCCAACAATGATCAGCAAGACATGAAAGACAGAGCTGACAAAGTGAAAAGAATGGATATGAATATGGGGGACTTTGTTCATCCCTAAAGCACTCAGAACACTGCTAAAGAGACAGACGCAAAGTCCCAATTAGTCACTTAGACGGGAAATTTTGAAACCCAAATCCAAAAATCATAGAAAACGGAAAATTCAACATTCTGGCATTTAGATTAAAGAGACGAAAACATGAATGTATATTGTTTATCAAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAGATTTATCCTCACAGACCCATTACCGAATTATCAGAGCTAA

mRNA sequence

ATGAAAGACGAAAACATGAATGTATATTGTTTATCAAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAGATTTATCCTCACAGACCCATTACCGAATTATCAGAGCTAA

Coding sequence (CDS)

ATGAAAGACGAAAACATGAATGTATATTGTTTATCAAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAGATTTATCCTCACAGACCCATTACCGAATTATCAGAGCTAA

Protein sequence

MKDENMNVYCLSRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYRFILTDPLPNYQS

Homology

[Close]

BLAST of Lsi01G011110 vs. TrEMBL
Match: A0A0A0KJ49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486800 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.0e-17
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1


Query: 13  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYRFILTDPLPNY 60
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPY+FILTDPLP+Y
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHY 107

[Close]

BLAST of Lsi01G011110 vs. TrEMBL
Match: A0A059B8W6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05083 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 14 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 48
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

[Close]

BLAST of Lsi01G011110 vs. NCBI nr
Match: gi|700193203|gb|KGN48407.1| (hypothetical protein Csa_6G486800 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1


Query: 13  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYRFILTDPLPNY 60
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPY+FILTDPLP+Y
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHY 107

[Close]

BLAST of Lsi01G011110 vs. NCBI nr
Match: gi|629096449|gb|KCW62444.1| (hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis])

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 14 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 48
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

The following BLAST results are available for this feature:

BLAST of Lsi01G011110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G011110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ49_CUCSA	9.0e-17	95.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486800 PE=4 SV=1	[more]
A0A059B8W6_EUCGR	2.9e-07	91.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05083 PE=4 SV=1	[more]

BLAST of Lsi01G011110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G011110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193203\|gb\|KGN48407.1\|	1.3e-16	95.74	hypothetical protein Csa_6G486800 [Cucumis sativus]	[more]
gi\|629096449\|gb\|KCW62444.1\|	4.2e-07	91.18	hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G011110.1	Lsi01G011110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G011110	Csa6G486800	Cucumber (Chinese Long) v2	culsiB434
Lsi01G011110	CSPI06G26970	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G011110	CsaV3_6G042120	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G011110	Cucumber (Chinese Long) v3	cuclsiB116
Lsi01G011110	Watermelon (97103) v2	lsiwmbB115
Lsi01G011110	Watermelon (97103) v2	lsiwmbB126
Lsi01G011110	Wax gourd	lsiwgoB162
Lsi01G011110	Wax gourd	lsiwgoB183
Lsi01G011110	Bottle gourd (USVL1VR-Ls)	lsilsiB029
Lsi01G011110	Cucumber (Gy14) v1	cgylsiB125
Lsi01G011110	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G011110	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G011110	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G011110	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G011110	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G011110	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G011110	Wild cucumber (PI 183967)	cpilsiB105
Lsi01G011110	Cucumber (Chinese Long) v2	culsiB108
Lsi01G011110	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G011110	Watermelon (97103) v1	lsiwmB142
Lsi01G011110	Watermelon (97103) v1	lsiwmB160
Lsi01G011110	Cucumber (Gy14) v2	cgyblsiB096
Lsi01G011110	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G011110	Melon (DHL92) v3.6.1	lsimedB134
Lsi01G011110	Silver-seed gourd	carlsiB214
Lsi01G011110	Silver-seed gourd	carlsiB742