Csa6G486800 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G486800
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 22615794 .. 22616165 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAAAATTTCAGAAACAAA

mRNA sequence

ATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

Coding sequence (CDS)

ATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

Protein sequence

MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFVRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP*
Homology
[Close]
BLAST of Csa6G486800 vs. TrEMBL
Match: A0A0A0KJ49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486800 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.6e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60
           MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV
Sbjct: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60

Query: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 119
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 118

[Close]
BLAST of Csa6G486800 vs. TrEMBL
Match: A0A059B8W6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05083 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.7e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 62 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 96
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

[Close]
BLAST of Csa6G486800 vs. NCBI nr
Match: gi|700193203|gb|KGN48407.1| (hypothetical protein Csa_6G486800 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.2e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60
           MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV
Sbjct: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60

Query: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 119
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 118

[Close]
BLAST of Csa6G486800 vs. NCBI nr
Match: gi|629096449|gb|KCW62444.1| (hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis])

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 62 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 96
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

The following BLAST results are available for this feature:
BLAST of Csa6G486800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ49_CUCSA3.6e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486800 PE=4 SV=1[more]
A0A059B8W6_EUCGR5.7e-0791.18Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05083 PE=4 SV=1[more]
BLAST of Csa6G486800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193203|gb|KGN48407.1|5.2e-62100.00hypothetical protein Csa_6G486800 [Cucumis sativus][more]
gi|629096449|gb|KCW62444.1|8.1e-0791.18hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091356cucumber EST collection version 3.0transcribed_cluster
CU134292cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G486800.1Csa6G486800.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU134292CU134292transcribed_cluster
CU091356CU091356transcribed_cluster