CsaV3_6G042120 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G042120
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 24648610 .. 24649877 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAATTTTCAAGATTAGCTCCATAAACTTACTTTTGTAACTCAAAATTTCATATAATCGTATACAATTTAAGATAAATTATTTAAGAAAGCTATTATTGAAAAGTCTAATTTATTTTTCAAAAAAAAATTGTGAAGTAAAAAGCGATTTATATTTTATAATGTCCTATTCGATGATTGTACATATAAAAATGGATTCTAAACACAAATTTGGTGAATACATCTAGTTTTGATTGGTCCATACCACCATTAATACCATCACTTAGATGAAAAACAATATGTTAGAACAATATCAATCCCATCTGCAGCTTCATTCTGGGAAGGATACCACAATCCAATTAAGGAAAATTAAGATTCCATAGGAACAGGCAACTTCAATGCTGCAAAAGCCCACAAATTCAGCAAGGTTATATGAGAATTCAAGCATTTTAAATTCAAAGAAAAAACTGAAGAAACAAGAAACGACCATAAACATTTTTCTGGTGTATGTTCTTTCGATAATGTTTATTGAGAAATAAGCCTTAGGATTTAAGTATATGACACTGAATTCCAAACAACAGAAAGCATGGTGAATGTGAATGTATAAAGGAATCAATGAATGACACACCTTTGATTTATCAAATTGGGTTTTATTTTTCATAAGTTGATAAGAAACTCAGACATCCAAGGAAGGAAAAAAAGCAGCAATAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTAAGGATATCATCACTGTTAAGAGTTCTCCAACGGGTAAAAGTCATACAAATCAAGCATGTAAAATCGAATAATGAAAGTGAAAATCTTCCATCCAGCAATGATCAGCAAGACATAATAGAAAGAGCTGACAAAGTGAAAAGGATGGAAATGAATATATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

mRNA sequence

ATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

Coding sequence (CDS)

ATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

Protein sequence

MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFVRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP
Homology
[Close]
BLAST of CsaV3_6G042120 vs. NCBI nr
Match: KGN48407.1 (hypothetical protein Csa_6G486800 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.0e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60
           MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV
Sbjct: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60

Query: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 119
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 118

[Close]
BLAST of CsaV3_6G042120 vs. NCBI nr
Match: KCW62444.1 (hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 62 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 96
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

[Close]
BLAST of CsaV3_6G042120 vs. TrEMBL
Match: tr|A0A0A0KJ49|A0A0A0KJ49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486800 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.7e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60
           MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV
Sbjct: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60

Query: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 119
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 118

[Close]
BLAST of CsaV3_6G042120 vs. TrEMBL
Match: tr|A0A059B8W6|A0A059B8W6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H05083 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 62 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 96
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

The following BLAST results are available for this feature:
BLAST of CsaV3_6G042120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48407.11.0e-61100.00hypothetical protein Csa_6G486800 [Cucumis sativus][more]
KCW62444.11.6e-0691.18hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis][more]
BLAST of CsaV3_6G042120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G042120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G042120 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJ49|A0A0A0KJ49_CUCSA6.7e-62100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486800 PE=4 SV=1[more]
tr|A0A059B8W6|A0A059B8W6_EUCGR1.0e-0691.18Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H05083 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G042120.1CsaV3_6G042120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G042120CSPI06G26970Wild cucumber (PI 183967)cpicucB363
CsaV3_6G042120ClCG01G015840Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G042120Lsi01G011110Bottle gourd (USVL1VR-Ls)cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G042120Watermelon (Charleston Gray)cucwcgB467
CsaV3_6G042120Watermelon (97103) v1cucwmB527
CsaV3_6G042120Watermelon (97103) v1cucwmB556
CsaV3_6G042120Watermelon (97103) v2cucwmbB430
CsaV3_6G042120Watermelon (97103) v2cucwmbB454
CsaV3_6G042120Wax gourdcucwgoB635
CsaV3_6G042120Wax gourdcucwgoB643
CsaV3_6G042120Cucumber (Chinese Long) v3cuccucB092
CsaV3_6G042120Silver-seed gourdcarcucB0271
CsaV3_6G042120Silver-seed gourdcarcucB0849
CsaV3_6G042120Cucumber (Gy14) v2cgybcucB089
CsaV3_6G042120Cucumber (Gy14) v2cgybcucB298
CsaV3_6G042120Cucumber (Gy14) v1cgycucB126
CsaV3_6G042120Cucumber (Gy14) v1cgycucB381
CsaV3_6G042120Cucurbita maxima (Rimu)cmacucB0670
CsaV3_6G042120Cucurbita maxima (Rimu)cmacucB0749
CsaV3_6G042120Cucurbita maxima (Rimu)cmacucB0809
CsaV3_6G042120Cucurbita maxima (Rimu)cmacucB1035
CsaV3_6G042120Cucurbita moschata (Rifu)cmocucB0658
CsaV3_6G042120Cucurbita moschata (Rifu)cmocucB0738
CsaV3_6G042120Cucurbita moschata (Rifu)cmocucB0793
CsaV3_6G042120Cucurbita moschata (Rifu)cmocucB1019
CsaV3_6G042120Cucurbita pepo (Zucchini)cpecucB0092
CsaV3_6G042120Cucurbita pepo (Zucchini)cpecucB0366
CsaV3_6G042120Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G042120Cucurbita pepo (Zucchini)cpecucB0944
CsaV3_6G042120Wild cucumber (PI 183967)cpicucB113
CsaV3_6G042120Bottle gourd (USVL1VR-Ls)cuclsiB447
CsaV3_6G042120Melon (DHL92) v3.5.1cucmeB439
CsaV3_6G042120Melon (DHL92) v3.6.1cucmedB430