Lsi01G005300 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G005300
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA binding protein
Locationchr01 : 4343875 .. 4344645 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGACAGAATATGGGGCGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTGTTGCTTCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACCATGGAAGCCCTCCTCCTCGACAAAAAAGGTTCAGCGACAAGGATCAGATGGAATACACTGAGATACTGAAGCTTCGTGGTCTCCCCTTTTCTGTGACAAAATCCAACATCATTGAATTTTTCGGGGAGTTCGATCTGGCAGAAGATAGGATACATATTGCAAGTCGTCCAGATGGGAAGGCTACCGGAGAGGCTTACGTGGAGTTTGCTTCAGCAGAGGAGGCGAAGAGAGCGATGAGCAAGGACAAGATGACAATTGGATCGAGATATGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAA

mRNA sequence

ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGACAGAATATGGGGCGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTGTTGCTTCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACCATGGAAGCCCTCCTCCTCGACAAAAAAGGTTCAGCGACAAGGATCAGATGGAATACACTGAGATACTGAAGCTTCGTGGTCTCCCCTTTTCTGTGACAAAATCCAACATCATTGAATTTTTCGGGGAGTTCGATCTGGCAGAAGATAGGATACATATTGCAAGTCGTCCAGATGGGAAGGCTACCGGAGAGGCTTACGTGGAGTTTGCTTCAGCAGAGGAGGCGAAGAGAGCGATGAGCAAGGACAAGATGACAATTGGATCGAGATATGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAA

Coding sequence (CDS)

ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGACAGAATATGGGGCGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTGTTGCTTCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACCATGGAAGCCCTCCTCCTCGACAAAAAAGGTTCAGCGACAAGGATCAGATGGAATACACTGAGATACTGAAGCTTCGTGGTCTCCCCTTTTCTGTGACAAAATCCAACATCATTGAATTTTTCGGGGAGTTCGATCTGGCAGAAGATAGGATACATATTGCAAGTCGTCCAGATGGGAAGGCTACCGGAGAGGCTTACGTGGAGTTTGCTTCAGCAGAGGAGGCGAAGAGAGCGATGAGCAAGGACAAGATGACAATTGGATCGAGATATGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTAA

Protein sequence

MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Homology
[Close]
BLAST of Lsi01G005300 vs. Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.4e-26
Identity = 74/202 (36.63%), Postives = 108/202 (53.47%), Query Frame = 1 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM--------------DWVLKHSGPNSADTANDG------ 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  II+FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 -FVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Lsi01G005300 vs. Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-26
Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 1 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM--------------DWVLKHSGPNSADSANDG------ 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 -FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Lsi01G005300 vs. Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-26
Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 1 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM--------------DWVLKHSGPNSADSANDG------ 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 -FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Lsi01G005300 vs. Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-26
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 1 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDV-----LLVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM--------------DWVLKHSGPNSADSANDG------ 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 -FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Lsi01G005300 vs. Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-26
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 1 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDV-----LLVNKNGRFMGEAFVVFAGSVQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYT 171
           ++DR++MG RY+EVF+  R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM--------------DWVLKHSGPNSADSANDG------ 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMS 231
             ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 -FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Lsi01G005300 vs. TrEMBL
Match: A0A0A0KJN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509630 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 2.4e-143
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]
BLAST of Lsi01G005300 vs. TrEMBL
Match: A0A067EU91_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024584mg PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.3e-124
Identity = 223/258 (86.43%), Postives = 239/258 (92.64%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS-FPPTHAFPVVRLRGLP 60
           +LGSGGVSDGYEVGSKRQRMMEPNPYFAVSSS +GFQPYGYG  FPP  +FPVVRLRGLP
Sbjct: 8   ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLP 67

Query: 61  FNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVE 120
           FNCTDIDI KFFAGLDIVDVLLVNKNGRF GEAFVVFAG +QVEFALQRDRQNMGRRYVE
Sbjct: 68  FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127

Query: 121 VFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFSV 180
           VFRCKRQDYYNAVASEVNYEGIYDND+HGSPPP R KR++DKDQME+TEILK+RGLPFSV
Sbjct: 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187

Query: 181 TKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVE 240
            KS I++FF ++ + ED+IHIA RPDGKATGEAYVEF S EEAKRAM KDKMTIGSRYVE
Sbjct: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247

Query: 241 LFPSTPNEARRAESRSRQ 257
           LFPSTP+EARRAESRSRQ
Sbjct: 248 LFPSTPDEARRAESRSRQ 265

[Close]
BLAST of Lsi01G005300 vs. TrEMBL
Match: V4TGP3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016281mg PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.3e-124
Identity = 223/258 (86.43%), Postives = 239/258 (92.64%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS-FPPTHAFPVVRLRGLP 60
           +LGSGGVSDGYEVGSKRQRMMEPNPYFAVSSS +GFQPYGYG  FPP  +FPVVRLRGLP
Sbjct: 8   ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLP 67

Query: 61  FNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVE 120
           FNCTDIDI KFFAGLDIVDVLLVNKNGRF GEAFVVFAG +QVEFALQRDRQNMGRRYVE
Sbjct: 68  FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127

Query: 121 VFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFSV 180
           VFRCKRQDYYNAVASEVNYEGIYDND+HGSPPP R KR++DKDQME+TEILK+RGLPFSV
Sbjct: 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187

Query: 181 TKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVE 240
            KS I++FF ++ + ED+IHIA RPDGKATGEAYVEF S EEAKRAM KDKMTIGSRYVE
Sbjct: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247

Query: 241 LFPSTPNEARRAESRSRQ 257
           LFPSTP+EARRAESRSRQ
Sbjct: 248 LFPSTPDEARRAESRSRQ 265

[Close]
BLAST of Lsi01G005300 vs. TrEMBL
Match: A5BUE1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016468 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.3e-124
Identity = 225/259 (86.87%), Postives = 243/259 (93.82%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS--FPPTHAFPVVRLRGL 60
           MLGSGGVSDGYE+GSKRQRMME NPYFAVSSS +GFQPYGYGS   PPT  FPVVRLRGL
Sbjct: 1   MLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPT--FPVVRLRGL 60

Query: 61  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 120
           PFNCTDIDIFKFFAGLDIVDVLLVNK+GRF GEA+VVFAGS+Q +FALQRDRQNMGRRYV
Sbjct: 61  PFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYV 120

Query: 121 EVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFS 180
           EVFRCK+QDYY+AVASEVNYEGIYDND+HGSPPP R KRFSDKDQME+TEILKLRGLPFS
Sbjct: 121 EVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFS 180

Query: 181 VTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYV 240
           V KS I+EFFG+F+L +D++HIA RPDGKATGEAYVEFASAEEAK+AM KDKMTIGSRYV
Sbjct: 181 VKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYV 240

Query: 241 ELFPSTPNEARRAESRSRQ 257
           ELFPSTP+EARRAESRSRQ
Sbjct: 241 ELFPSTPDEARRAESRSRQ 257

[Close]
BLAST of Lsi01G005300 vs. TrEMBL
Match: F6I0K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00080 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.3e-124
Identity = 225/259 (86.87%), Postives = 243/259 (93.82%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS--FPPTHAFPVVRLRGL 60
           MLGSGGVSDGYE+GSKRQRMME NPYFAVSSS +GFQPYGYGS   PPT  FPVVRLRGL
Sbjct: 8   MLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPT--FPVVRLRGL 67

Query: 61  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 120
           PFNCTDIDIFKFFAGLDIVDVLLVNK+GRF GEA+VVFAGS+Q +FALQRDRQNMGRRYV
Sbjct: 68  PFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYV 127

Query: 121 EVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFS 180
           EVFRCK+QDYY+AVASEVNYEGIYDND+HGSPPP R KRFSDKDQME+TEILKLRGLPFS
Sbjct: 128 EVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFS 187

Query: 181 VTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYV 240
           V KS I+EFFG+F+L +D++HIA RPDGKATGEAYVEFASAEEAK+AM KDKMTIGSRYV
Sbjct: 188 VKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYV 247

Query: 241 ELFPSTPNEARRAESRSRQ 257
           ELFPSTP+EARRAESRSRQ
Sbjct: 248 ELFPSTPDEARRAESRSRQ 264

[Close]
BLAST of Lsi01G005300 vs. TAIR10
Match: AT5G66010.1 (AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-94
Identity = 175/263 (66.54%), Postives = 206/263 (78.33%), Query Frame = 1 

Query: 1   MLGSGGV---SDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRG 60
           M GS G    S GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVVRLRG
Sbjct: 1   MYGSRGAMFGSGGYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAG-----GFPVVRLRG 60

Query: 61  LPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRY 120
           LPFNC DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFAG +QVE ALQRDR NMGRRY
Sbjct: 61  LPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRY 120

Query: 121 VEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEILKLRG 180
           VEVFRC +QDYYNAVA+E   EG Y+ +   SPPP    R KRFS+K+++EYTE+LK+RG
Sbjct: 121 VEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240
           LP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF + EEA+RAM+KDKM+IG
Sbjct: 181 LPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 257
           SRYVELFP+T  EARRAE+RSRQ
Sbjct: 241 SRYVELFPTTREEARRAEARSRQ 255

[Close]
BLAST of Lsi01G005300 vs. TAIR10
Match: AT3G20890.1 (AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 130/288 (45.14%), Postives = 182/288 (63.19%), Query Frame = 1 

Query: 3   GSGGVSDGYEVGSKRQRMME---PNPYFAVSSSTAG-FQPYGYGSFPPTHAFPVVRLRGL 62
           G G   DG E+G KRQRM++   P P++    S+   + PYG+ + PP   FP VRLRGL
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGL 64

Query: 63  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 122
           PF+C ++D+ +FF GLD+VDVL V++N +  GEAF V    +QV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 123 EVFRCKRQDYYNAVASEVNYEGIY--------------------------DNDYHGSPPP 182
           EVFR  +Q+YY A+A+EV    ++                               GS P 
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPR 184

Query: 183 R---QKRFSD--KDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKA 242
           R   + R SD  K+ +E+T IL+LRGLPFS  K +I++FF +F+L+ED +H+    +G+ 
Sbjct: 185 RHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 243 TGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSR 256
           TGEA+VEF +AE+++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of Lsi01G005300 vs. TAIR10
Match: AT4G36960.1 (AT4G36960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-07
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 169 LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKD 228
           L + G+P+ +    + ++  +F   ED I +  R  G++ G  YV FASAE+AK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 229 KMTIGSRYVELFPSTPNEARRAESR 254
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

[Close]
BLAST of Lsi01G005300 vs. TAIR10
Match: AT3G10845.1 (AT3G10845.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 4.1e-06
Identity = 39/157 (24.84%), Postives = 69/157 (43.95%), Query Frame = 1 

Query: 80  LLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM---GRRYVEVFRC------KRQDYYN 139
           L+VN  G+ +G+ FV FA + + E AL++ +      G  +++          K +DY  
Sbjct: 214 LIVNHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLG 273

Query: 140 AVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEF 199
               E   EG+ +  Y      ++  F             +  LP   +   ++ FF +F
Sbjct: 274 QERDEAAVEGLAETPYFVEEARKKTLF-------------VTNLPPRTSIQRMLYFFQDF 333

Query: 200 DLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSK 228
           ++   R+ +     GK  G  Y EFASA EA++A+ +
Sbjct: 334 EVV--RVRLIVDQSGKHMGCGYFEFASANEAEKALEQ 355

[Close]
BLAST of Lsi01G005300 vs. NCBI nr
Match: gi|449434084|ref|XP_004134826.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus])

HSP 1 Score: 516.2 bits (1328), Expect = 3.4e-143
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]
BLAST of Lsi01G005300 vs. NCBI nr
Match: gi|659080654|ref|XP_008440908.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo])

HSP 1 Score: 515.8 bits (1327), Expect = 4.4e-143
Identity = 254/256 (99.22%), Postives = 256/256 (100.00%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
           FRCKRQDYYNA+A+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]
BLAST of Lsi01G005300 vs. NCBI nr
Match: gi|1009169220|ref|XP_015903074.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 465.3 bits (1196), Expect = 6.8e-128
Identity = 232/258 (89.92%), Postives = 246/258 (95.35%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS-FPPTHAFPVVRLRGLP 60
           M GSGGVSDGYEVGSKRQRMME NPYFAVSSST+GFQPYGYG+ F    +FPVVRLRGLP
Sbjct: 8   MFGSGGVSDGYEVGSKRQRMMESNPYFAVSSSTSGFQPYGYGAGFHQPPSFPVVRLRGLP 67

Query: 61  FNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVE 120
           FNCTDIDIFKFFAGLDIVDVLLVNKNGRF GEAFVVFAGS+QVEFALQRDRQNMGRRYVE
Sbjct: 68  FNCTDIDIFKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGSMQVEFALQRDRQNMGRRYVE 127

Query: 121 VFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFSV 180
           VFRCKR+DYYNAVA+EVNYEGIYDNDYHGSPPP R KRFSDK+QMEYTEILK+RGLPFS 
Sbjct: 128 VFRCKREDYYNAVAAEVNYEGIYDNDYHGSPPPSRSKRFSDKEQMEYTEILKMRGLPFSA 187

Query: 181 TKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVE 240
           TKS+I+EFFGEF+LAEDRIHIA RPDGKATGEAYVEF+SAEEAK+AMSKDKMTIGSRYVE
Sbjct: 188 TKSDIVEFFGEFNLAEDRIHIACRPDGKATGEAYVEFSSAEEAKKAMSKDKMTIGSRYVE 247

Query: 241 LFPSTPNEARRAESRSRQ 257
           LFPSTP+EARRAESRSRQ
Sbjct: 248 LFPSTPDEARRAESRSRQ 265

[Close]
BLAST of Lsi01G005300 vs. NCBI nr
Match: gi|147834707|emb|CAN70556.1| (hypothetical protein VITISV_016468 [Vitis vinifera])

HSP 1 Score: 451.1 bits (1159), Expect = 1.3e-123
Identity = 225/259 (86.87%), Postives = 243/259 (93.82%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS--FPPTHAFPVVRLRGL 60
           MLGSGGVSDGYE+GSKRQRMME NPYFAVSSS +GFQPYGYGS   PPT  FPVVRLRGL
Sbjct: 1   MLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPT--FPVVRLRGL 60

Query: 61  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYV 120
           PFNCTDIDIFKFFAGLDIVDVLLVNK+GRF GEA+VVFAGS+Q +FALQRDRQNMGRRYV
Sbjct: 61  PFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYV 120

Query: 121 EVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFS 180
           EVFRCK+QDYY+AVASEVNYEGIYDND+HGSPPP R KRFSDKDQME+TEILKLRGLPFS
Sbjct: 121 EVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFS 180

Query: 181 VTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYV 240
           V KS I+EFFG+F+L +D++HIA RPDGKATGEAYVEFASAEEAK+AM KDKMTIGSRYV
Sbjct: 181 VKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYV 240

Query: 241 ELFPSTPNEARRAESRSRQ 257
           ELFPSTP+EARRAESRSRQ
Sbjct: 241 ELFPSTPDEARRAESRSRQ 257

[Close]
BLAST of Lsi01G005300 vs. NCBI nr
Match: gi|567907979|ref|XP_006446303.1| (hypothetical protein CICLE_v10016281mg [Citrus clementina])

HSP 1 Score: 451.1 bits (1159), Expect = 1.3e-123
Identity = 223/258 (86.43%), Postives = 239/258 (92.64%), Query Frame = 1 

Query: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS-FPPTHAFPVVRLRGLP 60
           +LGSGGVSDGYEVGSKRQRMMEPNPYFAVSSS +GFQPYGYG  FPP  +FPVVRLRGLP
Sbjct: 8   ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLP 67

Query: 61  FNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVE 120
           FNCTDIDI KFFAGLDIVDVLLVNKNGRF GEAFVVFAG +QVEFALQRDRQNMGRRYVE
Sbjct: 68  FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127

Query: 121 VFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFSV 180
           VFRCKRQDYYNAVASEVNYEGIYDND+HGSPPP R KR++DKDQME+TEILK+RGLPFSV
Sbjct: 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187

Query: 181 TKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVE 240
            KS I++FF ++ + ED+IHIA RPDGKATGEAYVEF S EEAKRAM KDKMTIGSRYVE
Sbjct: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247

Query: 241 LFPSTPNEARRAESRSRQ 257
           LFPSTP+EARRAESRSRQ
Sbjct: 248 LFPSTPDEARRAESRSRQ 265

The following BLAST results are available for this feature:
BLAST of Lsi01G005300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HNRPF_BOVIN4.4e-2636.63Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3[more]
HNRPF_RAT5.8e-2636.14Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV... [more]
HNRPF_MOUSE5.8e-2636.14Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3[more]
HNRPF_MACFA5.8e-2636.14Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 ... [more]
HNRPF_HUMAN5.8e-2636.14Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3[more]
BLAST of Lsi01G005300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJN7_CUCSA2.4e-14399.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509630 PE=4 SV=1[more]
A0A067EU91_CITSI9.3e-12486.43Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024584mg PE=4 SV=1[more]
V4TGP3_9ROSI9.3e-12486.43Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016281mg PE=4 SV=1[more]
A5BUE1_VITVI9.3e-12486.87Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016468 PE=4 SV=1[more]
F6I0K0_VITVI9.3e-12486.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00080 PE=4 SV=... [more]
BLAST of Lsi01G005300 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G66010.11.4e-9466.54 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G20890.11.4e-6245.14 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G36960.18.3e-0732.94 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G10845.14.1e-0624.84 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Lsi01G005300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434084|ref|XP_004134826.1|3.4e-14399.61PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativu... [more]
gi|659080654|ref|XP_008440908.1|4.4e-14399.22PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo][more]
gi|1009169220|ref|XP_015903074.1|6.8e-12889.92PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Ziziphus jujub... [more]
gi|147834707|emb|CAN70556.1|1.3e-12386.87hypothetical protein VITISV_016468 [Vitis vinifera][more]
gi|567907979|ref|XP_006446303.1|1.3e-12386.43hypothetical protein CICLE_v10016281mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004712 protein serine/threonine/tyrosine kinase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G005300.1Lsi01G005300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 54..116
score: 1.7E-6coord: 171..237
score: 6.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 52..121
score: 1.3E-5coord: 168..240
score: 1.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 167..244
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 52..133
score: 3.5E-17coord: 151..255
score: 6.1
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 45..130
score: 1.61E-17coord: 166..253
score: 1.02
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 8..256
score: 4.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G005300Csa6G509630Cucumber (Chinese Long) v2culsiB434
Lsi01G005300CSPI06G32460Wild cucumber (PI 183967)cpilsiB439
Lsi01G005300Cucsa.044260Cucumber (Gy14) v1cgylsiB022
Lsi01G005300CmaCh07G003850Cucurbita maxima (Rimu)cmalsiB786
Lsi01G005300CmaCh03G006230Cucurbita maxima (Rimu)cmalsiB597
Lsi01G005300CmoCh07G003780Cucurbita moschata (Rifu)cmolsiB774
Lsi01G005300Cla014352Watermelon (97103) v1lsiwmB144
Lsi01G005300MELO3C007973Melon (DHL92) v3.5.1lsimeB156
Lsi01G005300ClCG01G020890Watermelon (Charleston Gray)lsiwcgB127
Lsi01G005300MELO3C007973.2Melon (DHL92) v3.6.1lsimedB163
Lsi01G005300Cla97C01G020450Watermelon (97103) v2lsiwmbB115
Lsi01G005300Bhi03G000568Wax gourdlsiwgoB168
Lsi01G005300Cp4.1LG10g10320Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G005300CsGy6G032090Cucumber (Gy14) v2cgyblsiB398
Lsi01G005300Carg00538Silver-seed gourdcarlsiB364
Lsi01G005300Carg07917Silver-seed gourdcarlsiB585
Lsi01G005300CsaV3_6G047850Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G005300Bottle gourd (USVL1VR-Ls)lsilsiB078
Lsi01G005300Cucumber (Gy14) v1cgylsiB527
Lsi01G005300Cucurbita maxima (Rimu)cmalsiB306
Lsi01G005300Cucurbita maxima (Rimu)cmalsiB407
Lsi01G005300Cucurbita maxima (Rimu)cmalsiB517
Lsi01G005300Cucurbita moschata (Rifu)cmolsiB293
Lsi01G005300Cucurbita moschata (Rifu)cmolsiB393
Lsi01G005300Cucurbita moschata (Rifu)cmolsiB502
Lsi01G005300Cucurbita moschata (Rifu)cmolsiB582
Lsi01G005300Cucurbita pepo (Zucchini)cpelsiB165
Lsi01G005300Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G005300Wild cucumber (PI 183967)cpilsiB164
Lsi01G005300Melon (DHL92) v3.5.1lsimeB146
Lsi01G005300Watermelon (Charleston Gray)lsiwcgB120
Lsi01G005300Watermelon (97103) v1lsiwmB129
Lsi01G005300Melon (DHL92) v3.6.1lsimedB152
Lsi01G005300Cucumber (Chinese Long) v3cuclsiB181
Lsi01G005300Watermelon (97103) v2lsiwmbB118