Carg00538 (gene) Silver-seed gourd

Overview
NameCarg00538
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHeterogeneous nuclear ribonucleoprotein, putative
LocationCucurbita_argyrosperma_scaffold_014 : 235392 .. 236162 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGGAGCGGGGGGGTTTCGAATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTATGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCCGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTAGACATTGTGGATGTGCTGCTTGTCAACAAGAATGGGCGATTCATGGGAGAAGCCTTTGTTGTCTTTGCTGGATCTTTGCAGGTTGAGTTCGCGTTGCAACGGGATCGACAGAATATGGGGCGTAGATATGTAGAAGTCTTTAGCTGCAAAAGGCAGGATTATTATAATGCTGTTGCTGCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACAATGGAAGTCCTCCTCCTCGACAAAAGAGGATCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTCGACCTTGCAGAAGAAAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGGGAGGCTTATGTGGAGTTCGCTTCAGCAGAGGATGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGGTACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCTAGGAGAGCTGAGTCAAGGTCAAGACAGTGA

mRNA sequence

ATGTTGGGGAGCGGGGGGGTTTCGAATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTATGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCCGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTAGACATTGTGGATGTGCTGCTTGTCAACAAGAATGGGCGATTCATGGGAGAAGCCTTTGTTGTCTTTGCTGGATCTTTGCAGGTTGAGTTCGCGTTGCAACGGGATCGACAGAATATGGGGCGTAGATATGTAGAAGTCTTTAGCTGCAAAAGGCAGGATTATTATAATGCTGTTGCTGCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACAATGGAAGTCCTCCTCCTCGACAAAAGAGGATCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTCGACCTTGCAGAAGAAAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGGGAGGCTTATGTGGAGTTCGCTTCAGCAGAGGATGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGGTACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCTAGGAGAGCTGAGTCAAGGTCAAGACAGTGA

Coding sequence (CDS)

ATGTTGGGGAGCGGGGGGGTTTCGAATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCAACCTTATGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCCGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGATATTTTCAAGTTCTTTGCTGGACTAGACATTGTGGATGTGCTGCTTGTCAACAAGAATGGGCGATTCATGGGAGAAGCCTTTGTTGTCTTTGCTGGATCTTTGCAGGTTGAGTTCGCGTTGCAACGGGATCGACAGAATATGGGGCGTAGATATGTAGAAGTCTTTAGCTGCAAAAGGCAGGATTATTATAATGCTGTTGCTGCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACAATGGAAGTCCTCCTCCTCGACAAAAGAGGATCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTCCCCTTCTCTGTGACAAAATCCAACATCATTGAATTTTTCGGAGAGTTCGACCTTGCAGAAGAAAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGGGAGGCTTATGTGGAGTTCGCTTCAGCAGAGGATGCAAAGAGAGCAATGAGCAAGGACAAGATGACAATTGGATCGAGGTACGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCTAGGAGAGCTGAGTCAAGGTCAAGACAGTGA

Protein sequence

MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Homology
[Close]
BLAST of Carg00538 vs. NCBI nr
Match: XP_023544122.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544123.1 heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 512.3 bits (1318), Expect = 9.5e-142
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFAS EDAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASVEDAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]
BLAST of Carg00538 vs. NCBI nr
Match: XP_023544124.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023544125.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 512.3 bits (1318), Expect = 9.5e-142
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFAS EDAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASVEDAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]
BLAST of Carg00538 vs. NCBI nr
Match: XP_022950265.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >XP_022950266.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >XP_022950267.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >XP_022950268.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 510.8 bits (1314), Expect = 2.8e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASR DGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRSDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]
BLAST of Carg00538 vs. NCBI nr
Match: XP_022950263.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita moschata] >XP_022950264.1 heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 510.8 bits (1314), Expect = 2.8e-141
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASR DGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEERIHIASRSDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]
BLAST of Carg00538 vs. NCBI nr
Match: XP_022977312.1 (heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita maxima] >XP_022977313.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita maxima] >XP_022977314.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita maxima] >XP_022977315.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 508.8 bits (1309), Expect = 1.0e-140
Identity = 252/256 (98.44%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GY+VGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 1   MLGSGGVSDGYKVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           FSCKRQDYYNAVAAEVNYEGIY+NDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK
Sbjct: 121 FSCKRQDYYNAVAAEVNYEGIYNNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAE+AKRAMSKDKMTIGSRYVELF
Sbjct: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 241 PSTPNEARRAESRSRQ 256

[Close]
BLAST of Carg00538 vs. TAIR10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-93
Identity = 173/263 (65.78%), Postives = 204/263 (77.57%), Query Frame = 0 

Query: 1   MLGSGGV---SNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRG 60
           M GS G    S GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVVRLRG
Sbjct: 1   MYGSRGAMFGSGGYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAG-----GFPVVRLRG 60

Query: 61  LPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRY 120
           LPFNC DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFAG +QVE ALQRDR NMGRRY
Sbjct: 61  LPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRY 120

Query: 121 VEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPP----RQKRISDKDQMEYTEILKLRG 180
           VEVF C +QDYYNAVAAE   EG Y+ +   SPPP    R KR S+K+++EYTE+LK+RG
Sbjct: 121 VEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRG 180

Query: 181 LPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIG 240
           LP+SV K  IIEFF  + + + R+ +  RPDGKATGEA+VEF + E+A+RAM+KDKM+IG
Sbjct: 181 LPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIG 240

Query: 241 SRYVELFPSTPNEARRAESRSRQ 257
           SRYVELFP+T  EARRAE+RSRQ
Sbjct: 241 SRYVELFPTTREEARRAEARSRQ 255

[Close]
BLAST of Carg00538 vs. TAIR10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-58
Identity = 124/288 (43.06%), Postives = 174/288 (60.42%), Query Frame = 0 

Query: 3   GSGGVSNGYEVGSKRQRMME---PNPYFAV-SSSTAGFQPYGYGSFPPTHAFPVVRLRGL 62
           G G   +G E+G KRQRM++   P P++    SS   + PYG+ +      FP VRLRGL
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPXXXXXFPAVRLRGL 64

Query: 63  PFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYV 122
           PF+C ++D+ +FF GLD+VDVL V++N +  GEAF V    LQV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 123 EVFSCKRQDYYNAVAAEVNYEGIY-----------------------------DNDYNGS 182
           EVF   +Q+YY A+A EV    ++                                    
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184

Query: 183 PPPRQKRISD--KDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKA 242
               + R SD  K+ +E+T IL+LRGLPFS  K +I++FF +F+L+E+ +H+    +G+ 
Sbjct: 185 XXXXRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 243 TGEAYVEFASAEDAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSR 256
           TGEA+VEF +AED++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of Carg00538 vs. TAIR10
Match: AT4G36960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-07
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 169 LKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKD 228
           L + G+P+ +    + ++  +F   E+ I +  R  G++ G  YV FASAEDAK A+ K 
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KG 64

Query: 229 KMTIGSRYVELFPSTPNEARRAESR 254
           +  +G+R +E+  +TP E  R  ++
Sbjct: 65  EHFLGNRILEVKVATPKEEMRQPAK 88

[Close]
BLAST of Carg00538 vs. Swiss-Prot
Match: sp|Q3US41|ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-26
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 0 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSLQVEFALQR 111
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284

Query: 112 DRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEI 171
            + +MG RY+EV+    +D+        N    +              +S ++Q+    I
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQF--------------LSKENQV----I 344

Query: 172 LKLRGLPFSVTKSNIIEFFGE---FDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAM 231
           +++RGLPF+ T   ++ FFG+       +E I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 345 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 404

Query: 232 SKDKMTIGSRYVELFPSTPNEARRAESR 254
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 405 RKHKELLGKRYIELFRSTAAEVQQVLNR 414

[Close]
BLAST of Carg00538 vs. Swiss-Prot
Match: sp|Q6NXG1|ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 0 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSLQVEFALQR 111
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285

Query: 112 DRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEI 171
            + +MG RY+EV+    +D+        N    +              +S ++Q+    I
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQF--------------LSKENQV----I 345

Query: 172 LKLRGLPFSVTKSNIIEFFGE---FDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAM 231
           +++RGLPF+ T   ++ FFG+       +E I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 346 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 405

Query: 232 SKDKMTIGSRYVELFPSTPNEARRAESR 254
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 406 RKHKDLLGKRYIELFRSTAAEVQQVLNR 415

[Close]
BLAST of Carg00538 vs. Swiss-Prot
Match: sp|B2RYD2|ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-26
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 0 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFMGEAFVVFAGSLQVEFALQR 111
           VVR RGLP+  +D DI +FF GL+I      L +N  GR  GEA V F      + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285

Query: 112 DRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEI 171
            + +MG RY+EV+    +D+        N    +              +S ++Q+    I
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQF--------------LSKENQV----I 345

Query: 172 LKLRGLPFSVTKSNIIEFFGE---FDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAM 231
           +++RGLPF+ T   ++ FFG+       +E I   + PDG+ TG+A+V FA  E A+ A+
Sbjct: 346 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 405

Query: 232 SKDKMTIGSRYVELFPSTPNEARRAESR 254
            K K  +G RY+ELF ST  E ++  +R
Sbjct: 406 RKHKDLLGKRYIELFRSTAAEVQQVLNR 415

[Close]
BLAST of Carg00538 vs. Swiss-Prot
Match: sp|Q5E9J1|HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-26
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = 0 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSLQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 112 QRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYT 171
           ++DR++MG RY+EVF   R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADTAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMS 231
             ++LRGLPF  TK  II+FF   ++    I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Carg00538 vs. Swiss-Prot
Match: sp|P52597|HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 7.6e-26
Identity = 73/202 (36.14%), Postives = 105/202 (51.98%), Query Frame = 0 

Query: 52  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSLQVEFAL 111
           VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 112 QRDRQNMGRRYVEVFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYT 171
           ++DR++MG RY+EVF   R +               D     S P      +D       
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE--------------MDWVLKHSGPNSADSAND------- 131

Query: 172 EILKLRGLPFSVTKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMS 231
             ++LRGLPF  TK  I++FF   ++    I +   P+GK TGEA+V+FAS E A++A+ 
Sbjct: 132 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 191

Query: 232 KDKMTIGSRYVELFPSTPNEAR 249
           K K  IG RY+E+F S+  E R
Sbjct: 192 KHKERIGHRYIEVFKSSQEEVR 192

[Close]
BLAST of Carg00538 vs. TrEMBL
Match: tr|A0A0A0KJN7|A0A0A0KJN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 1.3e-139
Identity = 249/256 (97.27%), Postives = 254/256 (99.22%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           F CKRQDYYNAVAAEVNYEGIYDNDY+GSPPPRQKR SDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAE+RIHIASRPDGKATGEAYVEFASAE+AKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]
BLAST of Carg00538 vs. TrEMBL
Match: tr|A0A1S4DTH1|A0A1S4DTH1_CUCME (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485191 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 1.7e-139
Identity = 248/256 (96.88%), Postives = 254/256 (99.22%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLGSGGVS+GYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 67

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+QVEFALQRDRQNMGRRYVEV
Sbjct: 68  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 127

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPPRQKRISDKDQMEYTEILKLRGLPFSVTK 180
           F CKRQDYYNA+AAEVNYEGIYDNDY+GSPPPRQKR SDKDQMEYTEILKLRGLPFSVTK
Sbjct: 128 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 187

Query: 181 SNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVELF 240
           SNIIEFFGEFDLAE+RIHIASRPDGKATGEAYVEFASAE+AKRAMSKDKMTIGSRYVELF
Sbjct: 188 SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247

Query: 241 PSTPNEARRAESRSRQ 257
           PSTPNEARRAESRSRQ
Sbjct: 248 PSTPNEARRAESRSRQ 263

[Close]
BLAST of Carg00538 vs. TrEMBL
Match: tr|A0A2P5FTQ9|A0A2P5FTQ9_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_029370 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 7.2e-122
Identity = 222/257 (86.38%), Postives = 236/257 (91.83%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLG GGVS+GYEVGSKRQRMME NPYFAVSS T+GFQPYGYG       FPVVRLRGLPF
Sbjct: 1   MLGRGGVSDGYEVGSKRQRMMESNPYFAVSSGTSGFQPYGYGGVFQAPPFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRF GEAFVVFAG++QV+FAL+RDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGAVQVDFALRRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPP-RQKRISDKDQMEYTEILKLRGLPFSVT 180
           F CKRQDYYNA+AAEVNYEGIYDNDY+GSPPP R KR SDKDQMEYTEILK+RGLPFSVT
Sbjct: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPTRSKRFSDKDQMEYTEILKMRGLPFSVT 180

Query: 181 KSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVEL 240
           KS+I EFFG+F L E+RIHIA RPDGKATGEAYVEF SAE+AKRAM KDKMTIGSRYVEL
Sbjct: 181 KSDISEFFGDFKLIEDRIHIACRPDGKATGEAYVEFDSAEEAKRAMCKDKMTIGSRYVEL 240

Query: 241 FPSTPNEARRAESRSRQ 257
           FPSTP+EARRAESRSRQ
Sbjct: 241 FPSTPDEARRAESRSRQ 257

[Close]
BLAST of Carg00538 vs. TrEMBL
Match: tr|A0A2P5CZS0|A0A2P5CZS0_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_109740 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 9.4e-122
Identity = 222/257 (86.38%), Postives = 236/257 (91.83%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
           MLG GGVS+GYEVGSKRQRMME NPYFAVSS T+GFQPYGYG       FPVVRLRGLPF
Sbjct: 1   MLGRGGVSDGYEVGSKRQRMMESNPYFAVSSGTSGFQPYGYGGVIQAPPFPVVRLRGLPF 60

Query: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVEV 120
           NCTDIDIFKFFAGLDIVDVLLVNKNGRF GEAFVVFAG++QV+FAL+RDRQNMGRRYVEV
Sbjct: 61  NCTDIDIFKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGAVQVDFALRRDRQNMGRRYVEV 120

Query: 121 FSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPP-RQKRISDKDQMEYTEILKLRGLPFSVT 180
           F CKRQDYYNA+AAEVNYEGIYDNDY+GSPPP R KR SDKDQMEYTEILK+RGLPFSVT
Sbjct: 121 FRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPTRLKRFSDKDQMEYTEILKMRGLPFSVT 180

Query: 181 KSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVEL 240
           KS+I EFFG+F L E+RIHIA RPDGKATGEAYVEF SAE+AKRAM KDKMTIGSRYVEL
Sbjct: 181 KSDISEFFGDFKLIEDRIHIACRPDGKATGEAYVEFDSAEEAKRAMCKDKMTIGSRYVEL 240

Query: 241 FPSTPNEARRAESRSRQ 257
           FPSTP+EARRAESRSRQ
Sbjct: 241 FPSTPDEARRAESRSRQ 257

[Close]
BLAST of Carg00538 vs. TrEMBL
Match: tr|A0A2I4H792|A0A2I4H792_9ROSI (heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Juglans regia OX=51240 GN=LOC109014134 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 2.7e-121
Identity = 223/258 (86.43%), Postives = 238/258 (92.25%), Query Frame = 0 

Query: 1   MLGSGGVSNGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGY-GSFPPTHAFPVVRLRGLP 60
           MLGSGGVS+GYEVGSKRQRMME NPYFAVSS T+GFQPYGY GSF P   FPV+RLRGLP
Sbjct: 8   MLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTSGFQPYGYGGSFQPP-PFPVIRLRGLP 67

Query: 61  FNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSLQVEFALQRDRQNMGRRYVE 120
           FNCTDIDIFKFFAGLDIVDVLLVNK+GRF GEAFVVFAGS+QVEFALQRDRQ+MGRRYVE
Sbjct: 68  FNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAFVVFAGSMQVEFALQRDRQSMGRRYVE 127

Query: 121 VFSCKRQDYYNAVAAEVNYEGIYDNDYNGSPPP-RQKRISDKDQMEYTEILKLRGLPFSV 180
           VF CKRQDYYNAVAAE+NYEGIYDNDY+GSPPP R KR SDKDQ+EYTEILK+RGLPFSV
Sbjct: 128 VFRCKRQDYYNAVAAEINYEGIYDNDYHGSPPPARSKRFSDKDQLEYTEILKMRGLPFSV 187

Query: 181 TKSNIIEFFGEFDLAEERIHIASRPDGKATGEAYVEFASAEDAKRAMSKDKMTIGSRYVE 240
            K  I+EFF +F L EERIH+A RPDGKATGEAYVEFASAE+AKRAM KDKMTIGSRYVE
Sbjct: 188 KKPEIVEFFQDFKLIEERIHVACRPDGKATGEAYVEFASAEEAKRAMGKDKMTIGSRYVE 247

Query: 241 LFPSTPNEARRAESRSRQ 257
           LFPSTP+EARRAESRSRQ
Sbjct: 248 LFPSTPDEARRAESRSRQ 264

The following BLAST results are available for this feature:
BLAST of Carg00538 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023544122.19.5e-14299.22heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita pepo subsp.... [more]
XP_023544124.19.5e-14299.22heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp.... [more]
XP_022950265.12.8e-14199.22heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita moschata] >... [more]
XP_022950263.12.8e-14199.22heterogeneous nuclear ribonucleoprotein H-like isoform X1 [Cucurbita moschata] >... [more]
XP_022977312.11.0e-14098.44heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita maxima] >XP... [more]
BLAST of Carg00538 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G66010.11.5e-9365.78RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G20890.11.6e-5843.06RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G36960.18.3e-0732.94RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg00538 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3US41|ESRP1_MOUSE3.4e-2635.58Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 ... [more]
sp|Q6NXG1|ESRP1_HUMAN4.5e-2635.58Epithelial splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=ESRP1 PE=1 S... [more]
sp|B2RYD2|ESRP1_RAT4.5e-2635.58Epithelial splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Esrp1 ... [more]
sp|Q5E9J1|HNRPF_BOVIN5.9e-2636.63Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S... [more]
sp|P52597|HNRPF_HUMAN7.6e-2636.14Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1... [more]
BLAST of Carg00538 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJN7|A0A0A0KJN7_CUCSA1.3e-13997.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G509630 PE=4 SV=1[more]
tr|A0A1S4DTH1|A0A1S4DTH1_CUCME1.7e-13996.88heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P5FTQ9|A0A2P5FTQ9_9ROSA7.2e-12286.38Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_029370 P... [more]
tr|A0A2P5CZS0|A0A2P5CZS0_PARAD9.4e-12286.38Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1097... [more]
tr|A0A2I4H792|A0A2I4H792_9ROSI2.7e-12186.43heterogeneous nuclear ribonucleoprotein H2 isoform X1 OS=Juglans regia OX=51240 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00538-RACarg00538-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 52..121
e-value: 2.5E-5
score: 33.7
coord: 168..240
e-value: 7.6E-9
score: 45.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 54..116
e-value: 5.6E-6
score: 26.0
coord: 171..237
e-value: 7.1E-10
score: 38.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 167..244
score: 10.36
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 42..137
e-value: 1.5E-21
score: 78.3
coord: 152..256
e-value: 4.3E-29
score: 102.7
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 8..255
NoneNo IPR availablePANTHERPTHR13976:SF61RNA-BINDING RRM/RBD/RNP MOTIFS FAMILY PROTEINcoord: 8..255
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 52..121
e-value: 1.09067E-23
score: 90.6943
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 168..240
e-value: 2.13068E-28
score: 103.406
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 166..253
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 45..130

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00538Cla014352Watermelon (97103) v1carwmB0407
Carg00538ClCG01G020890Watermelon (Charleston Gray)carwcgB0397
Carg00538Cucsa.044260Cucumber (Gy14) v1carcgyB0466
Carg00538CmaCh07G003850Cucurbita maxima (Rimu)carcmaB0571
Carg00538CmaCh03G006230Cucurbita maxima (Rimu)carcmaB0567
Carg00538CmoCh03G006520Cucurbita moschata (Rifu)carcmoB0551
Carg00538Lsi01G005300Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00538Cp4.1LG19g08500Cucurbita pepo (Zucchini)carcpeB0563
Carg00538Cp4.1LG10g10320Cucurbita pepo (Zucchini)carcpeB0554
Carg00538Cla97C01G020450Watermelon (97103) v2carwmbB0426
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00538Carg07917Silver-seed gourdcarcarB425
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00538Melon (DHL92) v3.6.1carmedB0414
Carg00538Silver-seed gourdcarcarB189
Carg00538Silver-seed gourdcarcarB370
Carg00538Cucumber (Gy14) v2carcgybB0413
Carg00538Cucumber (Gy14) v2carcgybB0418
Carg00538Cucumber (Gy14) v1carcgyB0472
Carg00538Cucurbita maxima (Rimu)carcmaB0564
Carg00538Cucurbita moschata (Rifu)carcmoB0549
Carg00538Cucurbita moschata (Rifu)carcmoB0554
Carg00538Cucurbita pepo (Zucchini)carcpeB0561
Carg00538Cucurbita pepo (Zucchini)carcpeB0575
Carg00538Wild cucumber (PI 183967)carcpiB0441
Carg00538Wild cucumber (PI 183967)carcpiB0446
Carg00538Cucumber (Chinese Long) v2carcuB0441
Carg00538Cucumber (Chinese Long) v3carcucB0438
Carg00538Cucumber (Chinese Long) v3carcucB0442
Carg00538Bottle gourd (USVL1VR-Ls)carlsiB368
Carg00538Melon (DHL92) v3.5.1carmeB0410
Carg00538Melon (DHL92) v3.5.1carmeB0414
Carg00538Melon (DHL92) v3.6.1carmedB0418
Carg00538Watermelon (Charleston Gray)carwcgB0395
Carg00538Watermelon (97103) v1carwmB0398
Carg00538Watermelon (97103) v2carwmbB0427
Carg00538Wax gourdcarwgoB0488