Lsi01G005140 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G005140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RAC-like GTP binding protein 5
Location	chr01 : 4201695 .. 4204427 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTATGTAGATTTACTGGTTCGCGATTCACCCTCTTTTTTTCTTCACTTCCTTTCTCGTTCTTTCCTTGTGAATTGCTCTATGTTTCTCTGTTTTTGCACAAATTTACACGATAATCTTCGGATTTAATCACACCATTTTTGCGATTAATCAGTGTAGTCTGAAGCAGATCCGGCCGGAAAAATGTCTTATGCTTACCTATTCAAATACATCGTCATCGGTGATACTGGTACGTCTCTCACCATCCTTAACTACTGAATCATTTTTCCCAACATCGGTTTGCATTTGTGTTTCTTGAATTCTATGGCGTCCTCTGGTTTCTTTTTAATATCATAAACAACCGTTGTTTCGTCTTCAGGAGTTGGGAAATCATGTCTTCTCCTTCAGTTCACGGACAATCGATTTCAGCCGGTTCATGACTTAACTATCGGGGTTGAATTCGGAGCCAGGATGATCACGATTGAGAATAAGCCTATTAAGCTGCAGATTTGGGATACGGTATGTTTCTTTGGTTTCTAATTCGAATTTTCTGTAGCTTGTGTTACTTTAATCGAATACTTATGTAATTCTTTTGGATTCGAGAGAAGGTATATATATTCTTATGGTGCTGTCAACTGATTATACCTTTATTCCTTCTGTTGCGTCACTTTCTTAAGCAGTTTAGACTCTCTGCTTGGGTATGATTTCTTAGGCAACTTGTCAATTGTCAGCCACTCCATCACTTAGTTATCGGAGTATCCAAAAGATGCTGTCGTTCTCCATGTTAATTTATGGTGTCAATTGTCTTTTGTTACAGACGCTTTGCATTTTCCTTTAGTGGGATTTTCGTTCATATTTTAATTGGAACCAAACTTAGCAACTTCCTCCTTGTCCTTACTTTCTTAGAGTGTAACTTTTCTATTGTCTTCTTTATGATATATTTAACAAACAAGTGGGTCCATTCATACTTTAGATCTAATAAAGGTAAGTCACAAGTTGGAGCTATTACTGTTTCTTTTTGCGAGTTTAACGATTTAGGAGCTGGGTATTCGAACCGTCAACCTTTAGAATGGTCGTAACTCATAGACAACTTACCGTGTAGCTAATACTAATTAGCATGTACGTAATTTTTTTTTTTAATTCTTACAAATAGTACGAACAGAAGTTAGTCATTCCTTTTTCTTTATGGCACTTAGCATGAATTTTGACCATGTTGTGGAATCTATGAATAATCATCTCTTGACCTAACCCATGAAAATTGTTGTTGCGTTACCATATGGTCAAGGTTTTTTCCTTTTTCGCAAACATCAGTTTTTATTCAGTTGGGGATAGGATGGCCTCTTTTCTAATTGATAAGGCCGGCTAAGATACTGTTAACACACTTCTCAATTTTAAGGTTTGTATGATTGTAACAGGCCGGCCAAGAGTCATTCAGGTCCATCACGAGGTCCTACTATAGAGGTGCTGCTGGTGCCTTGCTTGTCTATGATATTACCAGGTCTTATTTTGTTTATTTTTCTTCTTGAATGACTTAGTATGCAAATGTGAAGTAATTTTTCACTTCATCTTTAATAAATGCTGGATCTTTATAAGCATCCTTAAATGATTAAAAAGATGGGACTTGTCATAAAGCGGTCCTTTGAAATCTGTGTTGGAAATGGATGTCCTATTGGATTTTTAATGTGAAGTTTTTCATTCTAATGTGCCTTTACCAAGCTGTTTATTTACACGAGAATTATGGTGACTGCGTTATTCAGAAGGGAGACTTTCAATCACTTGGTTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGTGAACAGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAAAATGTTGAAGAGGTGACTACATGAAATATGCTTATGCTGAAATACTTCGAAGCACACTGAGGCTTGTTTGGGTGTAAATTTTTATAGTATGCTAAAACCATTTAAGGAATCCAATCTCTCTAAATGACAAGCACCTCATTTTCAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGACGTTTCAAATGAGGTTAACATCCGTCTCTATCTTTTCTACTTCGACATACATAGATGACAAATTCGTGATTCGTTATTAGAACAACGAACTAAAATGTTAATGTTTTTAACTAAACAAAAAACATCAAGTGTATATTCTACTTCTGATTATGCATTTTCTGTCATCCTCAGTCTTATGGAATCAAAGTTGGATATGGCGGGATACCGGGACCGTCAGGAGGCAGAGAGGGATCATCTTCCCAAGCTGGTGGCTGTTGCAGTTGAACCTTGAACTTATAGAAACTAGCTGACTTCAATCTGTTTGTGCCTGCCTTAATTCATTTCTTCTTTCAATCTTTTTCATCATTCTTCATGTGCTGCTGTGAAATGTGAATACCCCACCCCCCCAACCAAAAAAAAGAGTAGAAGAACCTCTGTATGTTAAAAGAAAAGGCAGGTTCTTTTAATGCTACGCTTTCTTTCACTCTGCTGTCAGTTCAATTGTAAATCAACATTGTTTTGAATTCATTAGTTCATTTGGTGAAGAACCCTTAGCTCCATTTCTTGATTTTGGCTGTTTTTTATTCAATAAATGTGAAGATGGGGGTCTGACTTTCAAAGTTTC

mRNA sequence

TGTATGTAGATTTACTGGTTCGCGATTCACCCTCTTTTTTTCTTCACTTCCTTTCTCGTTCTTTCCTTGTGAATTGCTCTATGTTTCTCTGTTTTTGCACAAATTTACACGATAATCTTCGGATTTAATCACACCATTTTTGCGATTAATCAGTGTAGTCTGAAGCAGATCCGGCCGGAAAAATGTCTTATGCTTACCTATTCAAATACATCGTCATCGGTGATACTGGAGTTGGGAAATCATGTCTTCTCCTTCAGTTCACGGACAATCGATTTCAGCCGGTTCATGACTTAACTATCGGGGTTGAATTCGGAGCCAGGATGATCACGATTGAGAATAAGCCTATTAAGCTGCAGATTTGGGATACGGCCGGCCAAGAGTCATTCAGGTCCATCACGAGGTCCTACTATAGAGGTGCTGCTGGTGCCTTGCTTGTCTATGATATTACCAGAAGGGAGACTTTCAATCACTTGGTTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGTGAACAGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAAAATGTTGAAGAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGACGTTTCAAATGAGTCTTATGGAATCAAAGTTGGATATGGCGGGATACCGGGACCGTCAGGAGGCAGAGAGGGATCATCTTCCCAAGCTGGTGGCTGTTGCAGTTGAACCTTGAACTTATAGAAACTAGCTGACTTCAATCTGTTTGTGCCTGCCTTAATTCATTTCTTCTTTCAATCTTTTTCATCATTCTTCATGTGCTGCTGTGAAATGTGAATACCCCACCCCCCCAACCAAAAAAAAGAGTAGAAGAACCTCTGTATGTTAAAAGAAAAGGCAGGTTCTTTTAATGCTACGCTTTCTTTCACTCTGCTGTCAGTTCAATTGTAAATCAACATTGTTTTGAATTCATTAGTTCATTTGGTGAAGAACCCTTAGCTCCATTTCTTGATTTTGGCTGTTTTTTATTCAATAAATGTGAAGATGGGGGTCTGACTTTCAAAGTTTC

Coding sequence (CDS)

ATGTCTTATGCTTACCTATTCAAATACATCGTCATCGGTGATACTGGAGTTGGGAAATCATGTCTTCTCCTTCAGTTCACGGACAATCGATTTCAGCCGGTTCATGACTTAACTATCGGGGTTGAATTCGGAGCCAGGATGATCACGATTGAGAATAAGCCTATTAAGCTGCAGATTTGGGATACGGCCGGCCAAGAGTCATTCAGGTCCATCACGAGGTCCTACTATAGAGGTGCTGCTGGTGCCTTGCTTGTCTATGATATTACCAGAAGGGAGACTTTCAATCACTTGGTTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGTGAACAGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAAAATGTTGAAGAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGACGTTTCAAATGAGTCTTATGGAATCAAAGTTGGATATGGCGGGATACCGGGACCGTCAGGAGGCAGAGAGGGATCATCTTCCCAAGCTGGTGGCTGTTGCAGTTGA

Protein sequence

MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSNESYGIKVGYGGIPGPSGGREGSSSQAGGCCS

Homology

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BLAST of Lsi01G005140 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 8.7e-113
Identity = 200/210 (95.24%), Postives = 206/210 (98.10%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCC 211
           ESYGIKVGYGGIPGPSGGR+GS+SQ GGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

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BLAST of Lsi01G005140 vs. Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 6.1e-106
Identity = 193/211 (91.47%), Postives = 198/211 (93.84%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA  I+KKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGY  IPG SGG   SSSQ GGCCS
Sbjct: 181 ESYGIKVGY-AIPGQSGGAGSSSSQGGGCCS 210

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BLAST of Lsi01G005140 vs. Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.5e-104
Identity = 192/211 (91.00%), Postives = 198/211 (93.84%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMI I+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA  I+KKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGY  +PG SGG  GSSSQ GGCCS
Sbjct: 181 ESYGIKVGY-VVPGQSGG-AGSSSQGGGCCS 209

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BLAST of Lsi01G005140 vs. Swiss-Prot
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 2.5e-99
Identity = 175/210 (83.33%), Postives = 193/210 (91.90%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSY YLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARM+T++ +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHAN NM+IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAF++TAA I + IQDGVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCC 211
           ES GIK+GYG   G +GGR+G+ SQ GGCC
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

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BLAST of Lsi01G005140 vs. Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.6e-96
Identity = 177/213 (83.10%), Postives = 188/213 (88.26%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMI I+ K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHAN NMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAF+ TA  I+KKIQDGVFDVSN
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYG-GIPGPSGGR--EGSSSQAGGCC 211
           ESYGIKVGYG G  GP   +  EG + ++  CC
Sbjct: 181 ESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

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BLAST of Lsi01G005140 vs. TrEMBL
Match: A0A0A0KMV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510340 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 6.1e-113
Identity = 207/211 (98.10%), Postives = 209/211 (99.05%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLISWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSG REGSS+QAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 211

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BLAST of Lsi01G005140 vs. TrEMBL
Match: M5WV77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011412mg PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 6.7e-112
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSGGR+GSSSQAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211

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BLAST of Lsi01G005140 vs. TrEMBL
Match: A0A067GT96_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028237mg PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 6.7e-112
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSGGR+GSSSQAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211

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BLAST of Lsi01G005140 vs. TrEMBL
Match: A0A023HJ68_HEVBR (Rab8 OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 6.7e-112
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSGGR+GSSSQAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211

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BLAST of Lsi01G005140 vs. TrEMBL
Match: V4UB37_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016687mg PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 1.5e-111
Identity = 202/210 (96.19%), Postives = 207/210 (98.57%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCC 211
           ESYGIKVGYGGIPGPSGGR+GSSSQAGGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210

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BLAST of Lsi01G005140 vs. TAIR10
Match: AT4G17170.1 (AT4G17170.1 RAB GTPase homolog B1C)

HSP 1 Score: 407.5 bits (1046), Expect = 4.9e-114
Identity = 200/210 (95.24%), Postives = 206/210 (98.10%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCC 211
           ESYGIKVGYGGIPGPSGGR+GS+SQ GGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

[Close]

BLAST of Lsi01G005140 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2)

HSP 1 Score: 362.8 bits (930), Expect = 1.4e-100
Identity = 175/210 (83.33%), Postives = 193/210 (91.90%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSY YLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARM+T++ +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHAN NM+IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAF++TAA I + IQDGVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCC 211
           ES GIK+GYG   G +GGR+G+ SQ GGCC
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

[Close]

BLAST of Lsi01G005140 vs. TAIR10
Match: AT4G17160.1 (AT4G17160.1 RAB GTPase homolog B1A)

HSP 1 Score: 324.3 bits (830), Expect = 5.5e-89
Identity = 165/211 (78.20%), Postives = 180/211 (85.31%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAY FKYI+IGDTGVGKSCLLL+FTD RFQ VHDLTIGVEFGA+ ITI+NKPIKLQIW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHL SWLE+ARQHA+ NMT MLIGNK
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DL  +R VSTEEGEQFA+EHGLIFMEASAKTA NVEEAFV+TAATI+K+IQDGV D +N
Sbjct: 121 CDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEAN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSS-QAGGCC 211
           E        G  PGP GG++ SSS Q  GCC
Sbjct: 181 EP-------GITPGPFGGKDASSSQQRRGCC 204

[Close]

BLAST of Lsi01G005140 vs. TAIR10
Match: AT5G45750.1 (AT5G45750.1 RAB GTPase homolog A1C)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-49
Identity = 100/209 (47.85%), Postives = 135/209 (64.59%), Query Frame = 1


Query: 3   YAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT N F      TIGVEF  R + +++K IK QIWDT
Sbjct: 10  YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNKSD 122
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++ +WL++ R H + N+ +ML+GNKSD
Sbjct: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSD 129

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSNES 182
           L H  AV TE+ + FA++  L FME SA  A NVE AF +    I   +     + ++ES
Sbjct: 130 LRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASES 189

Query: 183 YGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
             +      I     G++ S+ + GGCCS
Sbjct: 190 ANVPSKGDKI---DIGKDVSAVKKGGCCS 215

[Close]

BLAST of Lsi01G005140 vs. TAIR10
Match: AT5G60860.1 (AT5G60860.1 RAB GTPase homolog A1F)

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-48
Identity = 98/209 (46.89%), Postives = 134/209 (64.11%), Query Frame = 1


Query: 3   YAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT N F      TIGVEF  R I +++K +K QIWDT
Sbjct: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNKSD 122
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H +AN+ IM +GNK+D
Sbjct: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGNKAD 129

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSNES 182
           L H RAVSTE+ + FA+     FME SA  + NVE AF +  + I++ +     D+ ++ 
Sbjct: 130 LRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKALDIGDDP 189

Query: 183 YGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
             +  G     G     + S+ +  GCCS
Sbjct: 190 AALPKGQTINVGSKD--DVSAVKKVGCCS 216

[Close]

BLAST of Lsi01G005140 vs. NCBI nr
Match: gi|449434064|ref|XP_004134816.1| (PREDICTED: ras-related protein RABB1c-like [Cucumis sativus])

HSP 1 Score: 414.8 bits (1065), Expect = 8.7e-113
Identity = 207/211 (98.10%), Postives = 209/211 (99.05%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLISWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSG REGSS+QAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 211

[Close]

BLAST of Lsi01G005140 vs. NCBI nr
Match: gi|659080734|ref|XP_008440951.1| (PREDICTED: ras-related protein RABB1c-like [Cucumis melo])

HSP 1 Score: 412.1 bits (1058), Expect = 5.7e-112
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW
Sbjct: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLISWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
           SDLAHRRAV+TEEGE FAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVTTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSG REGSSSQ GGCC+
Sbjct: 181 ESYGIKVGYGGIPGPSGSREGSSSQTGGCCN 211

[Close]

BLAST of Lsi01G005140 vs. NCBI nr
Match: gi|470114435|ref|XP_004293420.1| (PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca])

HSP 1 Score: 411.4 bits (1056), Expect = 9.7e-112
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSGGR+GSSSQAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211

[Close]

BLAST of Lsi01G005140 vs. NCBI nr
Match: gi|567915337|ref|XP_006449982.1| (hypothetical protein CICLE_v10016687mg [Citrus clementina])

HSP 1 Score: 410.2 bits (1053), Expect = 2.2e-111
Identity = 202/210 (96.19%), Postives = 207/210 (98.57%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCC 211
           ESYGIKVGYGGIPGPSGGR+GSSSQAGGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210

[Close]

BLAST of Lsi01G005140 vs. NCBI nr
Match: gi|657984461|ref|XP_008384325.1| (PREDICTED: ras-related protein RABB1c [Malus domestica])

HSP 1 Score: 410.2 bits (1053), Expect = 2.2e-111
Identity = 202/211 (95.73%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYAYLFKYIVIGDTGVGKSCLLLQFTDNRFQPVHDLTIGVEFGARMITIENKPIKLQIW 60
           MSYAYLFKYI+IGDTGVGKSCLLLQFTD RFQPVHDLTIGVEFGARMITI+NKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLVSWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGREGSSSQAGGCCS 212
           ESYGIKVGYGGIPGPSGGR+G+SSQAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGASSQAGGCCS 211

The following BLAST results are available for this feature:

BLAST of Lsi01G005140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAB1C_ARATH	8.7e-113	95.24	Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1	[more]
RAB2B_MAIZE	6.1e-106	91.47	Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1	[more]
RAB2A_MAIZE	2.5e-104	91.00	Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1	[more]
RAB1B_ARATH	2.5e-99	83.33	Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1	[more]
YPTV4_VOLCA	2.6e-96	83.10	GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1	[more]

BLAST of Lsi01G005140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMV2_CUCSA	6.1e-113	98.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510340 PE=4 SV=1	[more]
M5WV77_PRUPE	6.7e-112	96.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011412mg PE=4 SV=1	[more]
A0A067GT96_CITSI	6.7e-112	96.21	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028237mg PE=4 SV=1	[more]
A0A023HJ68_HEVBR	6.7e-112	96.21	Rab8 OS=Hevea brasiliensis PE=2 SV=1	[more]
V4UB37_9ROSI	1.5e-111	96.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016687mg PE=4 SV=1	[more]

BLAST of Lsi01G005140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17170.1	4.9e-114	95.24	RAB GTPase homolog B1C	[more]
AT4G35860.1	1.4e-100	83.33	GTP-binding 2	[more]
AT4G17160.1	5.5e-89	78.20	RAB GTPase homolog B1A	[more]
AT5G45750.1	1.1e-49	47.85	RAB GTPase homolog A1C	[more]
AT5G60860.1	1.2e-48	46.89	RAB GTPase homolog A1F	[more]

BLAST of Lsi01G005140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434064\|ref\|XP_004134816.1\|	8.7e-113	98.10	PREDICTED: ras-related protein RABB1c-like [Cucumis sativus]	[more]
gi\|659080734\|ref\|XP_008440951.1\|	5.7e-112	97.16	PREDICTED: ras-related protein RABB1c-like [Cucumis melo]	[more]
gi\|470114435\|ref\|XP_004293420.1\|	9.7e-112	96.21	PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]	[more]
gi\|567915337\|ref\|XP_006449982.1\|	2.2e-111	96.19	hypothetical protein CICLE_v10016687mg [Citrus clementina]	[more]
gi\|657984461\|ref\|XP_008384325.1\|	2.2e-111	95.73	PREDICTED: ras-related protein RABB1c [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR005225	Small_GTP-bd_dom
IPR001806	Small_GTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0030100	regulation of endocytosis
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0016482	cytosolic transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016049	cell growth
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005773	vacuole
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005768	endosome
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G005140.1	Lsi01G005140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 8..167 score: 1.1
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 7..161 score: 8.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..186 score: 2.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..179 score: 4.69
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 145..167 score: 2.2E-41coord: 110..123 score: 2.2E-41coord: 7..28 score: 2.2E-41coord: 48..70 score: 2.2E-41coord: 30..46 score: 2.2
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..211 score: 3.5E
None	No IPR available	PANTHER	PTHR24073:SF545	RAS-RELATED PROTEIN RABB1C	coord: 1..211 score: 3.5E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 4..170 score: 1.5
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 9..170 score: 5.5
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 7..170 score: 4.5E
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 12..211 score: 1.
None	No IPR available	PROFILE	PS51419	RAB	coord: 2..210 score: 35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G005140	Csa1G172570	Cucumber (Chinese Long) v2	culsiB020
Lsi01G005140	Csa6G510340	Cucumber (Chinese Long) v2	culsiB434
Lsi01G005140	CSPI01G15250	Wild cucumber (PI 183967)	cpilsiB019
Lsi01G005140	CSPI06G32640	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G005140	Cucsa.044430	Cucumber (Gy14) v1	cgylsiB022
Lsi01G005140	CmaCh07G003690	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G005140	CmaCh18G006260	Cucurbita maxima (Rimu)	cmalsiB367
Lsi01G005140	CmoCh07G003640	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G005140	Cla014371	Watermelon (97103) v1	lsiwmB144
Lsi01G005140	MELO3C026079	Melon (DHL92) v3.5.1	lsimeB129
Lsi01G005140	MELO3C007993	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G005140	ClCG01G021070	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G005140	ClCG01G011390	Watermelon (Charleston Gray)	lsiwcgB125
Lsi01G005140	MELO3C007993.2	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G005140	Cla97C01G020650	Watermelon (97103) v2	lsiwmbB115
Lsi01G005140	Cla97C01G011040	Watermelon (97103) v2	lsiwmbB113
Lsi01G005140	Bhi03G000541	Wax gourd	lsiwgoB168
Lsi01G005140	Cp4.1LG20g06700	Cucurbita pepo (Zucchini)	cpelsiB413
Lsi01G005140	Cp4.1LG19g08320	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G005140	CsGy6G032250	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G005140	CsGy1G015030	Cucumber (Gy14) v2	cgyblsiB016
Lsi01G005140	CsaV3_6G048070	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi01G005140	Lsi02G011760	Bottle gourd (USVL1VR-Ls)	lsilsiB065

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G005140	Cucumber (Gy14) v2	cgyblsiB014
Lsi01G005140	Silver-seed gourd	carlsiB364
Lsi01G005140	Silver-seed gourd	carlsiB585
Lsi01G005140	Cucumber (Chinese Long) v3	cuclsiB017
Lsi01G005140	Cucurbita maxima (Rimu)	cmalsiB517
Lsi01G005140	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G005140	Cucurbita moschata (Rifu)	cmolsiB502
Lsi01G005140	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G005140	Cucurbita pepo (Zucchini)	cpelsiB054