Lsi01G004870 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G004870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr01 : 4028646 .. 4030197 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCGGCATCACAGAGGGAGAAAGAGCGAGAACGACGCCGTATAAGGGACAGAGAAAGAAGATCGTCAATGAGCATAGAACAGAGAGAAAGGCATCTCGCAAGACGCCGACGAAACTACCAACTACGAAGATTAAGATCTCGAAATGTAAAAACAACGAATCCAAGCTTTCTTGAAACAAATTCATACAAGGCAGTTGCAGAGACATCAATTGCAGAGCTTGATCTGCAACAAAATGGGCTTAGGCTCGTTGGTTTCAACCACGAACAAGAATCCTTAAATCCAGATTCCATAACATCTTCCAGTAAGAAAAACTGTGTTCTTTAAAGATACCAAAATGGTGAGATAATTTTCTCTGAGTTAATTTTTTTAGGAATTCCATTAACAGGTTCTGAAACTTTGGACTCGAGAGCTGAAATTCTCCAAGGGAGGGTTCGGTTGAGTCATATTCGACGACTTGCACGTTCAATTGGGATTCACCAAATGTTTCCACACATGGGTTCCATGGAAGAATCAACTTCCAATTGTAAGTCTGAGGATCATCACTTGGAATATGATACAAGTAGATCATCGAAAGTGTTACGGCTAAATCGCGTCAAGCATCTTGCGAGAATGATGAATTCTTCTGTGAAACCATCTGCTGATGAATTACAACATCAAACTACCATTGCAGGTAGTGCTAATTATCGAGTTTCATCCTCTGTTTTCAAACTTGTTTTGTATTGGTTTTACACAACTTGATGGATCAAATTTCAGGATGAAATATTTGTCCTACCGCGGAAGTGAACAATCGGCCGGCAATAGCAATTATCAGATATATATGGATTCCGAGAGGAGTAATCCATATGAGATCTCTTCCTCATTCGAAATTTGGGATCAGTAACGAGCAGCCTTTATTGATACAATGTGAGTCAAATGGGGATTTTAATGAACCCACTTTTGTTATTTGTTGCAAATTTCAGTGGGTTTACTTTAGTTTGGGTTGAATTGTTTGTATGAAGGCAACAAAAAGGTACAAATGTGCCCAACAATGGAAGAAACAGAGGATGGTGGATTGATTGATTGGCTTGGCCTTCACATGTGACAGAAATCCAGAGTCTTCCAGCGAAAGATCAGAGGAAGAAGATGATGGTGTAACTTGTAAGATCATATATGTTGTACTAGTGGTTAAACAATCTTACTTACATGGAGAATTGAAGACATTATGAGTGGCAATTTTGAAGTAACAGCGATAAGGTTGATATGCTTCATTGAGCAGTTATATGTTGTTCTTGAAAGGATTAATATTCAAAATTCTGGGGTTTTCTTTCTCAGAACTTATGGAACGAACATTTATAGTTGGGGTTAGATTATAGGCATCTCTGCCCTATTTATACTTCGAGTGTATTTTTTTTTTTTAAAAAAAGAAAATTCATATGAAATAAAATCACTTATTCAATAAGTTGTTTTGAAAGAATTATTAATTTAGAGTGTGTTAGTGGATTGATAGGTTGACATAAACACGTTTTTTTTTAAGGAAAAAAAAGTGAAGTAACTGATTGAAAAC

mRNA sequence

ATGGAAGAATCGGCATCACAGAGGGAGAAAGAGCGAGAACGACGCCGTATAAGGGACAGAGAAAGAAGATCGTCAATGAGCATAGAACAGAGAGAAAGGCATCTCGCAAGACGCCGACGAAACTACCAACTACGAAGATTAAGATCTCGAAATGTAAAAACAACGAATCCAAGCTTTCTTGAAACAAATTCATACAAGGCAGTTGCAGAGACATCAATTGCAGAGCTTGATCTGCAACAAAATGGGCTTAGGCTCGTTGGTTTCAACCACGAACAAGAATCCTTAAATCCAGATTCCATAACATCTTCCAGTTCTGAAACTTTGGACTCGAGAGCTGAAATTCTCCAAGGGAGGGTTCGGTTGAGTCATATTCGACGACTTGCACGTTCAATTGGGATTCACCAAATGTTTCCACACATGGGTTCCATGGAAGAATCAACTTCCAATTGTAAGTCTGAGGATCATCACTTGGAATATGATACAAGTAGATCATCGAAAGTGTTACGGCTAAATCGCGTCAAGCATCTTGCGAGAATGATGAATTCTTCTGTGAAACCATCTGCTGATGAATTACAACATCAAACTACCATTGCAGGCAACAAAAAGGTACAAATGTGCCCAACAATGGAAGAAACAGAGGATGGTGGATTGATTGATTGGCTTGGCCTTCACATGTGACAGAAATCCAGAGTCTTCCAGCGAAAGATCAGAGGAAGAAGATGATGGTGTAACTTGTAAGATCATATATGTTGTACTAGTGGTTAAACAATCTTACTTACATGGAGAATTGAAGACATTATGAGTGGCAATTTTGAAGTAACAGCGATAAGGTTGATATGCTTCATTGAGCAGTTATATGTTGTTCTTGAAAGGATTAATATTCAAAATTCTGGGGTTTTCTTTCTCAGAACTTATGGAACGAACATTTATAGTTGGGGTTAGATTATAGGCATCTCTGCCCTATTTATACTTCGAGTGTATTTTTTTTTTTTAAAAAAAGAAAATTCATATGAAATAAAATCACTTATTCAATAAGTTGTTTTGAAAGAATTATTAATTTAGAGTGTGTTAGTGGATTGATAGGTTGACATAAACACGTTTTTTTTTAAGGAAAAAAAAGTGAAGTAACTGATTGAAAAC

Coding sequence (CDS)

ATGGAAGAATCGGCATCACAGAGGGAGAAAGAGCGAGAACGACGCCGTATAAGGGACAGAGAAAGAAGATCGTCAATGAGCATAGAACAGAGAGAAAGGCATCTCGCAAGACGCCGACGAAACTACCAACTACGAAGATTAAGATCTCGAAATGTAAAAACAACGAATCCAAGCTTTCTTGAAACAAATTCATACAAGGCAGTTGCAGAGACATCAATTGCAGAGCTTGATCTGCAACAAAATGGGCTTAGGCTCGTTGGTTTCAACCACGAACAAGAATCCTTAAATCCAGATTCCATAACATCTTCCAGTTCTGAAACTTTGGACTCGAGAGCTGAAATTCTCCAAGGGAGGGTTCGGTTGAGTCATATTCGACGACTTGCACGTTCAATTGGGATTCACCAAATGTTTCCACACATGGGTTCCATGGAAGAATCAACTTCCAATTGTAAGTCTGAGGATCATCACTTGGAATATGATACAAGTAGATCATCGAAAGTGTTACGGCTAAATCGCGTCAAGCATCTTGCGAGAATGATGAATTCTTCTGTGAAACCATCTGCTGATGAATTACAACATCAAACTACCATTGCAGGCAACAAAAAGGTACAAATGTGCCCAACAATGGAAGAAACAGAGGATGGTGGATTGATTGATTGGCTTGGCCTTCACATGTGA

Protein sequence

MEESASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFLETNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVRLSHIRRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKHLARMMNSSVKPSADELQHQTTIAGNKKVQMCPTMEETEDGGLIDWLGLHM

Homology

[Close]

BLAST of Lsi01G004870 vs. TrEMBL
Match: A0A0A0KHQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511630 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-71
Identity = 167/200 (83.50%), Postives = 175/200 (87.50%), Query Frame = 1


Query: 1   MEESASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFL 60
           ME  A QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQ+RRL+ RN KTTNPSF 
Sbjct: 52  MEGWAMQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQIRRLKYRNGKTTNPSFS 111

Query: 61  ETNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVR 120
            TNS+KAV+ETSIAELDLQQNGL LVGFNHEQESLNPDSITSSSSE LD RAEILQGRVR
Sbjct: 112 GTNSFKAVSETSIAELDLQQNGLMLVGFNHEQESLNPDSITSSSSEILDPRAEILQGRVR 171

Query: 121 LSHIRRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKHLARMM 180
           LSHIRRLARSIGIHQMF    S  ESTSNCKSED  LEYD +RSS+ LR  RVK LARMM
Sbjct: 172 LSHIRRLARSIGIHQMF----SQVESTSNCKSEDSSLEYDLNRSSRSLR--RVKRLARMM 231

Query: 181 NSSVKPSADE-LQHQTTIAG 200
           NSS+KPSADE  QH+TTIAG
Sbjct: 232 NSSLKPSADESSQHKTTIAG 245

[Close]

BLAST of Lsi01G004870 vs. TrEMBL
Match: B9IH46_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s01120g PE=4 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 1


Query: 7   QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFLETNSYK 66
           Q+E+ERERRR+RDR+RR +MS+E+RE+HLARRRRNYQLRR R+RNV+    S ++++   
Sbjct: 4   QKEQERERRRLRDRQRRQAMSVEEREKHLARRRRNYQLRRQRARNVRDPQASLVDSDEML 63

Query: 67  AVAET----SIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVRLS 126
            +       ++  + +Q NG+  V  +  Q S+N  +  S   E    +   L  R RL+
Sbjct: 64  MLPSNGNNQAVISVPVQSNGISDVDLDQRQGSVNAGNANSVGLEIPAHKLAKLPIRSRLN 123

Query: 127 HIRRLARSIG-------IHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKH 186
           HI+ LARS+         H++   +     +TSNC               K LRLNRVKH
Sbjct: 124 HIKHLARSLADTLDIGDSHKITGDLTMTGYATSNC------------TPPKPLRLNRVKH 183

Query: 187 LARMMNSSVKPS 188
           LAR+++S V P+
Sbjct: 184 LARVLSSDVTPT 183

[Close]

BLAST of Lsi01G004870 vs. TrEMBL
Match: V4UAX1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017578mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 79/194 (40.72%), Postives = 115/194 (59.28%), Query Frame = 1


Query: 2   EESASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFLE 61
           EE    +E+ERERRR+RDR+RR SMS+E+RE+HLARRR+NYQLRRLR+ N +      L+
Sbjct: 3   EERKLLKEQERERRRLRDRQRRQSMSVEEREKHLARRRKNYQLRRLRAENAQ------LD 62

Query: 62  TNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEIL---QGR 121
            +  ++ A TS  +         L  F      L+  S   + SE+L+  A  L    G+
Sbjct: 63  LDQPQSQATTSTNQ---------LTTFPSVSSDLDSGSHLLAKSESLEVPAHKLAKFSGQ 122

Query: 122 VRLSHIRRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKHLAR 181
           +RLS +++LARSI    +  H  +++ + ++ +S        +  S K LRLNRVKHLAR
Sbjct: 123 LRLSQLKQLARSINNSLINNHKVAVDVTINSNES--------SGVSPKGLRLNRVKHLAR 173

Query: 182 MMNSSVKPSADELQ 193
            +NS+VK SA + Q
Sbjct: 183 SLNSTVKESASQNQ 173

[Close]

BLAST of Lsi01G004870 vs. TrEMBL
Match: A5AXD4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1045g00030 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 78/194 (40.21%), Postives = 106/194 (54.64%), Query Frame = 1


Query: 7   QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKT----------TN 66
           QRE+ERERRRIRDR+RR SMS+E+RE+HLARRRRNYQLRR ++ N ++          T 
Sbjct: 16  QREQERERRRIRDRQRRQSMSLEEREKHLARRRRNYQLRRQKADNSQSDSQCKQTSARTG 75

Query: 67  PSFLETNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQ 126
                 N Y+A   T+ +EL +Q   +  +G N  Q+ L+  SI     E    +     
Sbjct: 76  GDQNTRNEYQAA--TTASELCVQSEVITHIGLNQGQDKLDVSSIQFEDMEAGGHKLAKFP 135

Query: 127 GRVRLSHIRRLARSIG--IHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVK 186
            R+RLSH+R LARSI   + ++      +       K+           S K LRLN VK
Sbjct: 136 RRLRLSHVRHLARSINNPMDELTGDNHPIGADAVTKKNASSKFGGTDPGSPKRLRLNHVK 195

Query: 187 HLARMMNSSVKPSA 189
            LAR ++S+VK SA
Sbjct: 196 RLARAVHSTVKESA 207

[Close]

BLAST of Lsi01G004870 vs. TrEMBL
Match: B9HCV8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01710g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.2e-15
Identity = 77/205 (37.56%), Postives = 112/205 (54.63%), Query Frame = 1


Query: 7   QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVK--TTNPSFLETNS 66
           Q+E+ERERRR+RDR+RR SMS+E+RE HLARRRRNYQLRR R++NV+    N S L  + 
Sbjct: 14  QKEQERERRRLRDRQRRQSMSVEERENHLARRRRNYQLRRERAQNVREPQINQSGLVDSD 73

Query: 67  YKAVA------ETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGR 126
              +       +T+I+ + +Q NG+     +  Q S N  +  S   E    +   L  R
Sbjct: 74  ESPMLLSDENHQTAIS-VPVQSNGVCHADLDQRQGSFNAGNANSVGLEVPAHKLAKLPIR 133

Query: 127 VRLSHIRRLARSI-------GIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLN 186
            RL+HI+ LARS+         H++   +    E+ SNC               K LRLN
Sbjct: 134 SRLNHIKHLARSLVDTLDIGDTHKIPADLTMKGETASNC------------TPPKALRLN 193

Query: 187 RVKHLARMMNSSVKPSADELQHQTT 197
           RVKHLAR+++S +  +  +  ++ T
Sbjct: 194 RVKHLARVLSSDITTTTAQNHNRET 205

[Close]

BLAST of Lsi01G004870 vs. TAIR10
Match: AT4G16460.1 (AT4G16460.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 1


Query: 1   MEESASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFL 60
           +E  +S++E+ERERRR+RDRERR SMS ++RERHLARRR+NYQLRR R            
Sbjct: 6   VESRSSRKEQERERRRLRDRERRQSMSQDERERHLARRRKNYQLRRQR------------ 65

Query: 61  ETNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITS--SSSETLDSRAEIL--- 120
                   AE +  +  +Q     + G N    +  PDS  S   S +++    E L   
Sbjct: 66  --------AEVNRLDSPIQ----AITGGNQAALNSPPDSGASFVESDQSVVIPVEELAKM 125

Query: 121 QGRVRLSHIRRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKH 180
            G +RL+ ++ LAR++          S     ++ K+            S  LRL+R+K 
Sbjct: 126 MGTIRLTRLKHLARTLNKSSTSTGAESSNTGATDAKTR--------CAMSNGLRLSRIKR 163

Query: 181 LARMMNSSVK 186
           L R     ++
Sbjct: 186 LVRFKGQQLR 163

[Close]

BLAST of Lsi01G004870 vs. NCBI nr
Match: gi|659079110|ref|XP_008440080.1| (PREDICTED: uncharacterized protein LOC103484665 [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 6.1e-72
Identity = 166/201 (82.59%), Postives = 178/201 (88.56%), Query Frame = 1


Query: 1   MEESASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFL 60
           ME SA +REKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRL+ +NVKTTNPSF 
Sbjct: 1   MEGSALRREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLKYQNVKTTNPSFS 60

Query: 61  ETNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVR 120
            TNS+KA++ETSIAELDLQQNG+ LVGFNHEQESLNPDSITSSSSETLD RAEILQGRVR
Sbjct: 61  GTNSFKAISETSIAELDLQQNGIMLVGFNHEQESLNPDSITSSSSETLDPRAEILQGRVR 120

Query: 121 LSHIRRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKHLARMM 180
           LSHIRRLARSIGIHQMF  +G   ESTSNCKS+D +LEYD SR SK LR   VK LARMM
Sbjct: 121 LSHIRRLARSIGIHQMFSQVGL--ESTSNCKSKDSNLEYDLSRPSKSLR--HVKRLARMM 180

Query: 181 NSSVKPSADE-LQHQTTIAGN 201
           NSSVKPSA+E  QHQT IAG+
Sbjct: 181 NSSVKPSANESSQHQTIIAGS 197

[Close]

BLAST of Lsi01G004870 vs. NCBI nr
Match: gi|778720142|ref|XP_011658116.1| (PREDICTED: uncharacterized protein LOC101212529 isoform X1 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 2.3e-71
Identity = 167/200 (83.50%), Postives = 175/200 (87.50%), Query Frame = 1


Query: 1   MEESASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFL 60
           ME  A QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQ+RRL+ RN KTTNPSF 
Sbjct: 52  MEGWAMQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQIRRLKYRNGKTTNPSFS 111

Query: 61  ETNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVR 120
            TNS+KAV+ETSIAELDLQQNGL LVGFNHEQESLNPDSITSSSSE LD RAEILQGRVR
Sbjct: 112 GTNSFKAVSETSIAELDLQQNGLMLVGFNHEQESLNPDSITSSSSEILDPRAEILQGRVR 171

Query: 121 LSHIRRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKHLARMM 180
           LSHIRRLARSIGIHQMF    S  ESTSNCKSED  LEYD +RSS+ LR  RVK LARMM
Sbjct: 172 LSHIRRLARSIGIHQMF----SQVESTSNCKSEDSSLEYDLNRSSRSLR--RVKRLARMM 231

Query: 181 NSSVKPSADE-LQHQTTIAG 200
           NSS+KPSADE  QH+TTIAG
Sbjct: 232 NSSLKPSADESSQHKTTIAG 245

[Close]

BLAST of Lsi01G004870 vs. NCBI nr
Match: gi|778720146|ref|XP_004134985.2| (PREDICTED: uncharacterized protein LOC101212529 isoform X2 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 2.3e-71
Identity = 167/200 (83.50%), Postives = 175/200 (87.50%), Query Frame = 1


Query: 1   MEESASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFL 60
           ME  A QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQ+RRL+ RN KTTNPSF 
Sbjct: 52  MEGWAMQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQIRRLKYRNGKTTNPSFS 111

Query: 61  ETNSYKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVR 120
            TNS+KAV+ETSIAELDLQQNGL LVGFNHEQESLNPDSITSSSSE LD RAEILQGRVR
Sbjct: 112 GTNSFKAVSETSIAELDLQQNGLMLVGFNHEQESLNPDSITSSSSEILDPRAEILQGRVR 171

Query: 121 LSHIRRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKHLARMM 180
           LSHIRRLARSIGIHQMF    S  ESTSNCKSED  LEYD +RSS+ LR  RVK LARMM
Sbjct: 172 LSHIRRLARSIGIHQMF----SQVESTSNCKSEDSSLEYDLNRSSRSLR--RVKRLARMM 231

Query: 181 NSSVKPSADE-LQHQTTIAG 200
           NSS+KPSADE  QH+TTIAG
Sbjct: 232 NSSLKPSADESSQHKTTIAG 245

[Close]

BLAST of Lsi01G004870 vs. NCBI nr
Match: gi|778720150|ref|XP_011658117.1| (PREDICTED: uncharacterized protein LOC101212529 isoform X3 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 4.0e-71
Identity = 165/196 (84.18%), Postives = 173/196 (88.27%), Query Frame = 1


Query: 5   ASQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFLETNS 64
           A QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQ+RRL+ RN KTTNPSF  TNS
Sbjct: 48  AMQREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQIRRLKYRNGKTTNPSFSGTNS 107

Query: 65  YKAVAETSIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVRLSHI 124
           +KAV+ETSIAELDLQQNGL LVGFNHEQESLNPDSITSSSSE LD RAEILQGRVRLSHI
Sbjct: 108 FKAVSETSIAELDLQQNGLMLVGFNHEQESLNPDSITSSSSEILDPRAEILQGRVRLSHI 167

Query: 125 RRLARSIGIHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKHLARMMNSSV 184
           RRLARSIGIHQMF    S  ESTSNCKSED  LEYD +RSS+ LR  RVK LARMMNSS+
Sbjct: 168 RRLARSIGIHQMF----SQVESTSNCKSEDSSLEYDLNRSSRSLR--RVKRLARMMNSSL 227

Query: 185 KPSADE-LQHQTTIAG 200
           KPSADE  QH+TTIAG
Sbjct: 228 KPSADESSQHKTTIAG 237

[Close]

BLAST of Lsi01G004870 vs. NCBI nr
Match: gi|566208023|ref|XP_006373594.1| (hypothetical protein POPTR_0016s01120g [Populus trichocarpa])

HSP 1 Score: 100.1 bits (248), Expect = 5.1e-18
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 1


Query: 7   QREKERERRRIRDRERRSSMSIEQRERHLARRRRNYQLRRLRSRNVKTTNPSFLETNSYK 66
           Q+E+ERERRR+RDR+RR +MS+E+RE+HLARRRRNYQLRR R+RNV+    S ++++   
Sbjct: 4   QKEQERERRRLRDRQRRQAMSVEEREKHLARRRRNYQLRRQRARNVRDPQASLVDSDEML 63

Query: 67  AVAET----SIAELDLQQNGLRLVGFNHEQESLNPDSITSSSSETLDSRAEILQGRVRLS 126
            +       ++  + +Q NG+  V  +  Q S+N  +  S   E    +   L  R RL+
Sbjct: 64  MLPSNGNNQAVISVPVQSNGISDVDLDQRQGSVNAGNANSVGLEIPAHKLAKLPIRSRLN 123

Query: 127 HIRRLARSIG-------IHQMFPHMGSMEESTSNCKSEDHHLEYDTSRSSKVLRLNRVKH 186
           HI+ LARS+         H++   +     +TSNC               K LRLNRVKH
Sbjct: 124 HIKHLARSLADTLDIGDSHKITGDLTMTGYATSNC------------TPPKPLRLNRVKH 183

Query: 187 LARMMNSSVKPS 188
           LAR+++S V P+
Sbjct: 184 LARVLSSDVTPT 183

The following BLAST results are available for this feature:

BLAST of Lsi01G004870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G004870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHQ0_CUCSA	1.6e-71	83.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511630 PE=4 SV=1	[more]
B9IH46_POPTR	3.5e-18	39.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s01120g PE=4 SV=2	[more]
V4UAX1_9ROSI	1.3e-15	40.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017578mg PE=4 SV=1	[more]
A5AXD4_VITVI	2.1e-15	40.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1045g00030 PE=4 SV=...	[more]
B9HCV8_POPTR	8.2e-15	37.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01710g PE=4 SV=1	[more]

BLAST of Lsi01G004870 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16460.1	3.0e-08	32.63	unknown protein	[more]

BLAST of Lsi01G004870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659079110\|ref\|XP_008440080.1\|	6.1e-72	82.59	PREDICTED: uncharacterized protein LOC103484665 [Cucumis melo]	[more]
gi\|778720142\|ref\|XP_011658116.1\|	2.3e-71	83.50	PREDICTED: uncharacterized protein LOC101212529 isoform X1 [Cucumis sativus]	[more]
gi\|778720146\|ref\|XP_004134985.2\|	2.3e-71	83.50	PREDICTED: uncharacterized protein LOC101212529 isoform X2 [Cucumis sativus]	[more]
gi\|778720150\|ref\|XP_011658117.1\|	4.0e-71	84.18	PREDICTED: uncharacterized protein LOC101212529 isoform X3 [Cucumis sativus]	[more]
gi\|566208023\|ref\|XP_006373594.1\|	5.1e-18	39.06	hypothetical protein POPTR_0016s01120g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004870.1	Lsi01G004870.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G004870	Csa6G511630	Cucumber (Chinese Long) v2	culsiB434
Lsi01G004870	CSPI06G32940	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G004870	CmaCh03G005810	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G004870	CmoCh03G006070	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G004870	Cla014397	Watermelon (97103) v1	lsiwmB144
Lsi01G004870	MELO3C007443	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G004870	MELO3C007443.2	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G004870	Cla97C01G020960	Watermelon (97103) v2	lsiwmbB115
Lsi01G004870	Bhi03G000506	Wax gourd	lsiwgoB168
Lsi01G004870	Cp4.1LG10g10020	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G004870	Carg00502	Silver-seed gourd	carlsiB364
Lsi01G004870	CsaV3_6G048400	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G004870	Cucumber (Gy14) v2	cgyblsiB014
Lsi01G004870	Cucumber (Gy14) v2	cgyblsiB016
Lsi01G004870	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G004870	Silver-seed gourd	carlsiB585
Lsi01G004870	Cucumber (Chinese Long) v3	cuclsiB017
Lsi01G004870	Watermelon (97103) v2	lsiwmbB112
Lsi01G004870	Bottle gourd (USVL1VR-Ls)	lsilsiB064
Lsi01G004870	Cucumber (Gy14) v1	cgylsiB022
Lsi01G004870	Cucurbita maxima (Rimu)	cmalsiB367
Lsi01G004870	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G004870	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G004870	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G004870	Cucurbita pepo (Zucchini)	cpelsiB413
Lsi01G004870	Wild cucumber (PI 183967)	cpilsiB019
Lsi01G004870	Cucumber (Chinese Long) v2	culsiB020
Lsi01G004870	Melon (DHL92) v3.5.1	lsimeB129
Lsi01G004870	Watermelon (Charleston Gray)	lsiwcgB127