Lsi01G003510 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATCCCTTCATCCCCATTTTCCCTCTTCTCATCGCCATTCTCCTTCTCTCGCCGTCTTTCTCTCTCGCCACCGCCCGGAAGGACGGCGGCTTCGCTGGCATGTTCGGACCTGGCAACGGATTTGACGACATACCCGGCTTTGGAAAGGGCTGGGACAAGGGGATCGTCGGCGGTGGATACGGCGGCGGTTACGGCGGCCCCAAAGGCGGTTACGGCAAGGGTGGCATCATAAGGAAACCTGTGGTGTGTAAAGAGAAAGGTCCTTGTTTCAATAAGAAGGTGACTTGTCCGGCTAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTTCGGCGGTGGCGGCGGTGGCGGTGGCTGCACCATCGACTGCTCTAAGAAATGTATCGGCTACTGTTAG ATGAATCCCTTCATCCCCATTTTCCCTCTTCTCATCGCCATTCTCCTTCTCTCGCCGTCTTTCTCTCTCGCCACCGCCCGGAAGGACGGCGGCTTCGCTGGCATGTTCGGACCTGGCAACGGATTTGACGACATACCCGGCTTTGGAAAGGGCTGGGACAAGGGGATCGTCGGCGGTGGATACGGCGGCGGTTACGGCGGCCCCAAAGGCGGTTACGGCAAGGGTGGCATCATAAGGAAACCTGTGGTGTGTAAAGAGAAAGGTCCTTGTTTCAATAAGAAGGTGACTTGTCCGGCTAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTTCGGCGGTGGCGGCGGTGGCGGTGGCTGCACCATCGACTGCTCTAAGAAATGTATCGGCTACTGTTAG ATGAATCCCTTCATCCCCATTTTCCCTCTTCTCATCGCCATTCTCCTTCTCTCGCCGTCTTTCTCTCTCGCCACCGCCCGGAAGGACGGCGGCTTCGCTGGCATGTTCGGACCTGGCAACGGATTTGACGACATACCCGGCTTTGGAAAGGGCTGGGACAAGGGGATCGTCGGCGGTGGATACGGCGGCGGTTACGGCGGCCCCAAAGGCGGTTACGGCAAGGGTGGCATCATAAGGAAACCTGTGGTGTGTAAAGAGAAAGGTCCTTGTTTCAATAAGAAGGTGACTTGTCCGGCTAAGTGCTTCTCCTCCTACAGCCGATCGGGCAAGGGCTTCGGCGGTGGCGGCGGTGGCGGTGGCTGCACCATCGACTGCTCTAAGAAATGTATCGGCTACTGTTAG MNPFIPIFPLLIAILLLSPSFSLATARKDGGFAGMFGPGNGFDDIPGFGKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC
BLAST of Lsi01G003510 vs. TrEMBL
Match: A0A0A0KHJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516980 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 4.8e-63 Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 1
BLAST of Lsi01G003510 vs. TrEMBL
Match: C6SVW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 3.1e-38 Identity = 90/149 (60.40%), Postives = 99/149 (66.44%), Query Frame = 1
BLAST of Lsi01G003510 vs. TrEMBL
Match: A0A067JDR6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 5.3e-38 Identity = 88/148 (59.46%), Postives = 99/148 (66.89%), Query Frame = 1
BLAST of Lsi01G003510 vs. TrEMBL
Match: A0A0B2PLW1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014337 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 6.9e-38 Identity = 89/149 (59.73%), Postives = 99/149 (66.44%), Query Frame = 1
BLAST of Lsi01G003510 vs. TrEMBL
Match: B9S5Z9_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1062760 PE=4 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 2.0e-37 Identity = 89/144 (61.81%), Postives = 100/144 (69.44%), Query Frame = 1
BLAST of Lsi01G003510 vs. TAIR10
Match: AT4G21620.1 (AT4G21620.1 glycine-rich protein) HSP 1 Score: 149.4 bits (376), Expect = 1.5e-36 Identity = 79/125 (63.20%), Postives = 94/125 (75.20%), Query Frame = 1
BLAST of Lsi01G003510 vs. TAIR10
Match: AT1G61255.1 (AT1G61255.1 BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2)) HSP 1 Score: 88.6 bits (218), Expect = 3.2e-18 Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 1
BLAST of Lsi01G003510 vs. NCBI nr
Match: gi|659078783|ref|XP_008439905.1| (PREDICTED: RNA-binding protein cabeza-like [Cucumis melo]) HSP 1 Score: 259.6 bits (662), Expect = 3.0e-66 Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 1
BLAST of Lsi01G003510 vs. NCBI nr
Match: gi|449433888|ref|XP_004134728.1| (PREDICTED: ctenidin-3-like [Cucumis sativus]) HSP 1 Score: 248.4 bits (633), Expect = 6.8e-63 Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 1
BLAST of Lsi01G003510 vs. NCBI nr
Match: gi|729297444|ref|XP_010547257.1| (PREDICTED: cold shock domain-containing protein 4 [Tarenaya hassleriana]) HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38 Identity = 89/138 (64.49%), Postives = 103/138 (74.64%), Query Frame = 1
BLAST of Lsi01G003510 vs. NCBI nr
Match: gi|729294962|ref|XP_010538465.1| (PREDICTED: glycine-rich RNA-binding protein GRP2A [Tarenaya hassleriana]) HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38 Identity = 87/139 (62.59%), Postives = 102/139 (73.38%), Query Frame = 1
BLAST of Lsi01G003510 vs. NCBI nr
Match: gi|351721048|ref|NP_001235149.1| (uncharacterized protein LOC100499725 precursor [Glycine max]) HSP 1 Score: 166.0 bits (419), Expect = 4.5e-38 Identity = 90/149 (60.40%), Postives = 99/149 (66.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |