Cp4.1LG10g09230 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG10g09230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlycine-rich protein
LocationCp4.1LG10 : 4708836 .. 4709213 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

mRNA sequence

ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

Coding sequence (CDS)

ATGAATCCCTCCCTCCTCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCGGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCCAAAGGCGGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

Protein sequence

MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC
BLAST of Cp4.1LG10g09230 vs. TrEMBL
Match: A0A0A0KHJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516980 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-50
Identity = 105/133 (78.95%), Postives = 112/133 (84.21%), Query Frame = 1

Query: 1   MNPSLLISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MN  + I   L+A+LLLSPS SLA         GMF PG GF DIPGF KGWDKGI+GGG
Sbjct: 1   MNLFIPIFPFLIAILLLSPSISLATARKDGGFDGMFGPGNGFGDIPGFGKGWDKGIIGGG 60

Query: 61  YGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGG 120
           YGGGYGGPKGGYGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRSGKG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSKKCIGYC 126
           CTIDC+KKCIGYC
Sbjct: 121 CTIDCTKKCIGYC 133

BLAST of Cp4.1LG10g09230 vs. TrEMBL
Match: A0A067JDR6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.8e-38
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 1

Query: 26  GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNK 85
           G F PG GF  IPGF KGW  GIVGGGYG GYGGP GGY KGGIIR TVVCKE+GPCY K
Sbjct: 54  GYFGPGAGFG-IPGFGKGWGNGIVGGGYGAGYGGPNGGYSKGGIIRPTVVCKERGPCYKK 113

Query: 86  KVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           K+TCPAKCF+SYSRSGKG+G GGGGGGCTIDC KKC  YC
Sbjct: 114 KLTCPAKCFTSYSRSGKGYGAGGGGGGCTIDCKKKCTAYC 152

BLAST of Cp4.1LG10g09230 vs. TrEMBL
Match: C6SVW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.2e-37
Identity = 88/149 (59.06%), Postives = 99/149 (66.44%), Query Frame = 1

Query: 1   MNPSLLISALLLAVLLLSPSASL------------------------AAGMFEPGGGFDD 60
           M P++ I  L L +L+ SPS +                         A G F PGGGF  
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS- 80

Query: 61  IPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSS 120
           IPGF  G+  GI+GGGYG GYGGP GG  KGGIIR TVVCK+KGPC+ KKVTCPAKCFSS
Sbjct: 81  IPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPAKCFSS 140

Query: 121 YSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           +SRSGKG+GGGGGGGGCTIDC KKCI YC
Sbjct: 141 FSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

BLAST of Cp4.1LG10g09230 vs. TrEMBL
Match: V7BT50_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G190300g PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 1

Query: 26  GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNK 85
           G F PGGGF  IPGF  G+  GIVGGGYG GYGGP GG  KGGIIR TVVCK++GPC+ K
Sbjct: 49  GFFGPGGGFS-IPGFGSGFGNGIVGGGYGSGYGGPSGGSSKGGIIRPTVVCKDRGPCFQK 108

Query: 86  KVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           KVTCPAKCFSS+SRSGKG+GGGGGGGGCTIDC KKC+ YC
Sbjct: 109 KVTCPAKCFSSFSRSGKGYGGGGGGGGCTIDCKKKCMAYC 147

BLAST of Cp4.1LG10g09230 vs. TrEMBL
Match: A0A0P0LY91_LABPU (Glycine-rich protein OS=Lablab purpureus GN=GRP PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 1

Query: 26  GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNK 85
           G F PGGGF  IPGF  G+  GIVGGGYG GYGGP GG  KGGIIR TVVCK++GPC+ K
Sbjct: 86  GFFGPGGGFS-IPGFGNGFGNGIVGGGYGSGYGGPNGGSSKGGIIRPTVVCKDRGPCFQK 145

Query: 86  KVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           KVTCPAKCF+S+SRSGKG+GGGGGGGGCTIDC KKCI YC
Sbjct: 146 KVTCPAKCFTSFSRSGKGYGGGGGGGGCTIDCKKKCIAYC 184

BLAST of Cp4.1LG10g09230 vs. TAIR10
Match: AT4G21620.1 (AT4G21620.1 glycine-rich protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-34
Identity = 74/129 (57.36%), Postives = 94/129 (72.87%), Query Frame = 1

Query: 4   SLLISALLLAVLLLSPSASLAAGMFE-------PGGGFDDIPGFRKGWDKGIVGGGYGGG 63
           S+L+++LL+ +L+ +  ++      +       PG GF  IPGF  G+    VGGGYGGG
Sbjct: 5   SILLASLLIIILVSATESARQKSGNDGLGFGGVPGSGF--IPGFGNGFPGTGVGGGYGGG 64

Query: 64  YGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTID 123
           +GGP GG+GKGG++R TV CKEKGPC  KK+ CPAKCF S+SRSGKG+GGGGGGGGCT+D
Sbjct: 65  FGGPSGGFGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMD 124

Query: 124 CSKKCIGYC 126
           C KKCI YC
Sbjct: 125 CKKKCIAYC 131

BLAST of Cp4.1LG10g09230 vs. TAIR10
Match: AT1G61255.1 (AT1G61255.1 BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2))

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-19
Identity = 62/140 (44.29%), Postives = 76/140 (54.29%), Query Frame = 1

Query: 6   LISALLLAVLLLS------PSASLAAGMFEPGGGFDDIPGFRKGWDKG------------ 65
           L+  +LL  L LS      P +S + G +           + KG+  G            
Sbjct: 7   LLFTILLLTLTLSHSRPARPESSSSTGSYSDQLKKHSKDNYNKGYGSGGYPGLTTEPATG 66

Query: 66  --IVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFG 125
             + G G GG Y    GGY KG  +R TV+C+EKG CY KK+TCPAKCF S SR GKG+ 
Sbjct: 67  FILPGSGPGGSYSELSGGYSKGRGVRLTVMCEEKGHCYMKKLTCPAKCFKSLSRKGKGY- 126

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: gi|659078783|ref|XP_008439905.1| (PREDICTED: RNA-binding protein cabeza-like [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 9.6e-51
Identity = 106/133 (79.70%), Postives = 112/133 (84.21%), Query Frame = 1

Query: 1   MNPSLLISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MN  + I   L+A+LLLSPS SLA         GMF PG GFDDIPGF KGWDKGIVGGG
Sbjct: 1   MNFFIPIFPFLIAILLLSPSLSLATSRKDGGFGGMFGPGNGFDDIPGFGKGWDKGIVGGG 60

Query: 61  YGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGG 120
           YGGGYGGPKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSKKCIGYC 126
           CTIDC+KKCIGYC
Sbjct: 121 CTIDCAKKCIGYC 133

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: gi|449433888|ref|XP_004134728.1| (PREDICTED: ctenidin-3-like [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-50
Identity = 105/133 (78.95%), Postives = 112/133 (84.21%), Query Frame = 1

Query: 1   MNPSLLISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MN  + I   L+A+LLLSPS SLA         GMF PG GF DIPGF KGWDKGI+GGG
Sbjct: 1   MNLFIPIFPFLIAILLLSPSISLATARKDGGFDGMFGPGNGFGDIPGFGKGWDKGIIGGG 60

Query: 61  YGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGG 120
           YGGGYGGPKGGYGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRSGKG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSKKCIGYC 126
           CTIDC+KKCIGYC
Sbjct: 121 CTIDCTKKCIGYC 133

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: gi|1009108847|ref|XP_015887003.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 166.4 bits (420), Expect = 3.2e-38
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 1

Query: 24  AAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCY 83
           A G+F PGGGF  IPGF KG+  GI+GGGYG GYGGP GGY KGG+IR TVVCKEKGPCY
Sbjct: 60  APGVFGPGGGFG-IPGFGKGFGSGIIGGGYGSGYGGPNGGYSKGGVIRPTVVCKEKGPCY 119

Query: 84  NKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
            KK+TCPAKCF+SYSRSGKG+G GGGGGGCT+DC KKC+ YC
Sbjct: 120 QKKLTCPAKCFTSYSRSGKGYGSGGGGGGCTMDCKKKCVAYC 160

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: gi|802782727|ref|XP_012091528.1| (PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas])

HSP 1 Score: 165.6 bits (418), Expect = 5.5e-38
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 1

Query: 26  GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNK 85
           G F PG GF  IPGF KGW  GIVGGGYG GYGGP GGY KGGIIR TVVCKE+GPCY K
Sbjct: 54  GYFGPGAGFG-IPGFGKGWGNGIVGGGYGAGYGGPNGGYSKGGIIRPTVVCKERGPCYKK 113

Query: 86  KVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           K+TCPAKCF+SYSRSGKG+G GGGGGGCTIDC KKC  YC
Sbjct: 114 KLTCPAKCFTSYSRSGKGYGAGGGGGGCTIDCKKKCTAYC 152

BLAST of Cp4.1LG10g09230 vs. NCBI nr
Match: gi|351721048|ref|NP_001235149.1| (uncharacterized protein LOC100499725 precursor [Glycine max])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 88/149 (59.06%), Postives = 99/149 (66.44%), Query Frame = 1

Query: 1   MNPSLLISALLLAVLLLSPSASL------------------------AAGMFEPGGGFDD 60
           M P++ I  L L +L+ SPS +                         A G F PGGGF  
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS- 80

Query: 61  IPGFRKGWDKGIVGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSS 120
           IPGF  G+  GI+GGGYG GYGGP GG  KGGIIR TVVCK+KGPC+ KKVTCPAKCFSS
Sbjct: 81  IPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPAKCFSS 140

Query: 121 YSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           +SRSGKG+GGGGGGGGCTIDC KKCI YC
Sbjct: 141 FSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHJ2_CUCSA1.1e-5078.95Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516980 PE=4 SV=1[more]
A0A067JDR6_JATCU3.8e-3879.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1[more]
C6SVW2_SOYBN7.2e-3759.06Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1[more]
V7BT50_PHAVU1.2e-3677.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G190300g PE=4 SV=1[more]
A0A0P0LY91_LABPU1.2e-3677.00Glycine-rich protein OS=Lablab purpureus GN=GRP PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21620.11.7e-3457.36 glycine-rich protein[more]
AT1G61255.13.5e-1944.29 BEST Arabidopsis thaliana protein match is: glycine-rich protein (TA... [more]
Match NameE-valueIdentityDescription
gi|659078783|ref|XP_008439905.1|9.6e-5179.70PREDICTED: RNA-binding protein cabeza-like [Cucumis melo][more]
gi|449433888|ref|XP_004134728.1|1.6e-5078.95PREDICTED: ctenidin-3-like [Cucumis sativus][more]
gi|1009108847|ref|XP_015887003.1|3.2e-3876.47PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Ziziphus... [more]
gi|802782727|ref|XP_012091528.1|5.5e-3879.00PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas][more]
gi|351721048|ref|NP_001235149.1|1.0e-3659.06uncharacterized protein LOC100499725 precursor [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g09230.1Cp4.1LG10g09230.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34789FAMILY NOT NAMEDcoord: 26..125
score: 3.9
NoneNo IPR availablePANTHERPTHR34789:SF1SUBFAMILY NOT NAMEDcoord: 26..125
score: 3.9

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g09230Cp4.1LG19g07410Cucurbita pepo (Zucchini)cpecpeB076