CmoCh03G004990 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G004990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGlycine-rich family protein
LocationCmo_Chr03 : 5284546 .. 5284923 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCCTCCCTCCCAATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCCGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCAAAAGGCAGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAAAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGCGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTGAGAAGTGTATTGGCTATTGTTAG

mRNA sequence

ATGAATCCCTCCCTCCCAATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCCGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCAAAAGGCAGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAAAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGCGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTGAGAAGTGTATTGGCTATTGTTAG

Coding sequence (CDS)

ATGAATCCCTCCCTCCCAATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCCGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCAAAAGGCAGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAAAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGCGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTGAGAAGTGTATTGGCTATTGTTAG
BLAST of CmoCh03G004990 vs. TrEMBL
Match: A0A0A0KHJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516980 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.7e-51
Identity = 103/133 (77.44%), Postives = 111/133 (83.46%), Query Frame = 1

Query: 1   MNPSLPISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MN  +PI   L+A+LLLSPS SLA         GMF PG GF DIPGF KGWDKGI+GGG
Sbjct: 1   MNLFIPIFPFLIAILLLSPSISLATARKDGGFDGMFGPGNGFGDIPGFGKGWDKGIIGGG 60

Query: 61  YGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSRKGFGGGGGGGG 120
           YGGGYGGPKG YGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRS KG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSEKCIGYC 126
           CTIDC++KCIGYC
Sbjct: 121 CTIDCTKKCIGYC 133

BLAST of CmoCh03G004990 vs. TrEMBL
Match: A0A067JDR6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.2e-37
Identity = 76/100 (76.00%), Postives = 81/100 (81.00%), Query Frame = 1

Query: 26  GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNK 85
           G F PG GF  IPGF KGW  GIVGGGYG GYGGP G Y KGGIIR TVVCKE+GPCY K
Sbjct: 54  GYFGPGAGFG-IPGFGKGWGNGIVGGGYGAGYGGPNGGYSKGGIIRPTVVCKERGPCYKK 113

Query: 86  KVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           K+TCPAKCF+SYSRS KG+G GGGGGGCTIDC +KC  YC
Sbjct: 114 KLTCPAKCFTSYSRSGKGYGAGGGGGGCTIDCKKKCTAYC 152

BLAST of CmoCh03G004990 vs. TrEMBL
Match: C6SVW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.1e-36
Identity = 85/149 (57.05%), Postives = 97/149 (65.10%), Query Frame = 1

Query: 1   MNPSLPISALLLAVLLLSPSASL------------------------AAGMFEPGGGFDD 60
           M P++ I  L L +L+ SPS +                         A G F PGGGF  
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS- 80

Query: 61  IPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSS 120
           IPGF  G+  GI+GGGYG GYGGP G   KGGIIR TVVCK+KGPC+ KKVTCPAKCFSS
Sbjct: 81  IPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPAKCFSS 140

Query: 121 YSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           +SRS KG+GGGGGGGGCTIDC +KCI YC
Sbjct: 141 FSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

BLAST of CmoCh03G004990 vs. TrEMBL
Match: A0A0B2PLW1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014337 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 84/149 (56.38%), Postives = 97/149 (65.10%), Query Frame = 1

Query: 1   MNPSLPISALLLAVLLLSPSASL------------------------AAGMFEPGGGFDD 60
           M P++ I  L L +L+ SPS +                         A G F PGGGF  
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS- 80

Query: 61  IPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSS 120
           IPGF  G+  GI+GGGYG GYGGP G   KGGIIR TV+CK+KGPC+ KKVTCPAKCFSS
Sbjct: 81  IPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVLCKDKGPCFQKKVTCPAKCFSS 140

Query: 121 YSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           +SRS KG+GGGGGGGGCTIDC +KCI YC
Sbjct: 141 FSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

BLAST of CmoCh03G004990 vs. TrEMBL
Match: V7BT50_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G190300g PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 74/100 (74.00%), Postives = 82/100 (82.00%), Query Frame = 1

Query: 26  GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNK 85
           G F PGGGF  IPGF  G+  GIVGGGYG GYGGP G   KGGIIR TVVCK++GPC+ K
Sbjct: 49  GFFGPGGGFS-IPGFGSGFGNGIVGGGYGSGYGGPSGGSSKGGIIRPTVVCKDRGPCFQK 108

Query: 86  KVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           KVTCPAKCFSS+SRS KG+GGGGGGGGCTIDC +KC+ YC
Sbjct: 109 KVTCPAKCFSSFSRSGKGYGGGGGGGGCTIDCKKKCMAYC 147

BLAST of CmoCh03G004990 vs. TAIR10
Match: AT4G21620.1 (AT4G21620.1 glycine-rich protein)

HSP 1 Score: 140.6 bits (353), Expect = 6.6e-34
Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 1

Query: 30  PGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTC 89
           PG GF  IPGF  G+    VGGGYGGG+GGP G +GKGG++R TV CKEKGPC  KK+ C
Sbjct: 38  PGSGF--IPGFGNGFPGTGVGGGYGGGFGGPSGGFGKGGVVRPTVTCKEKGPCNGKKLRC 97

Query: 90  PAKCFSSYSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           PAKCF S+SRS KG+GGGGGGGGCT+DC +KCI YC
Sbjct: 98  PAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 131

BLAST of CmoCh03G004990 vs. TAIR10
Match: AT1G61255.1 (AT1G61255.1 BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2))

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-19
Identity = 52/100 (52.00%), Postives = 61/100 (61.00%), Query Frame = 1

Query: 28  FEPGGGFDDIPGFRKGWDKGIV--GGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNK 87
           +  G G    PG       G +  G G GG Y    G Y KG  +R TV+C+EKG CY K
Sbjct: 47  YNKGYGSGGYPGLTTEPATGFILPGSGPGGSYSELSGGYSKGRGVRLTVMCEEKGHCYMK 106

Query: 88  KVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           K+TCPAKCF S SR  KG+  GGGGGGCTIDC +KC+ YC
Sbjct: 107 KLTCPAKCFKSLSRKGKGY--GGGGGGCTIDC-KKCVAYC 143

BLAST of CmoCh03G004990 vs. NCBI nr
Match: gi|659078783|ref|XP_008439905.1| (PREDICTED: RNA-binding protein cabeza-like [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 5.6e-51
Identity = 104/133 (78.20%), Postives = 111/133 (83.46%), Query Frame = 1

Query: 1   MNPSLPISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MN  +PI   L+A+LLLSPS SLA         GMF PG GFDDIPGF KGWDKGIVGGG
Sbjct: 1   MNFFIPIFPFLIAILLLSPSLSLATSRKDGGFGGMFGPGNGFDDIPGFGKGWDKGIVGGG 60

Query: 61  YGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSRKGFGGGGGGGG 120
           YGGGYGGPKG YGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRS KG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSEKCIGYC 126
           CTIDC++KCIGYC
Sbjct: 121 CTIDCAKKCIGYC 133

BLAST of CmoCh03G004990 vs. NCBI nr
Match: gi|449433888|ref|XP_004134728.1| (PREDICTED: ctenidin-3-like [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 9.6e-51
Identity = 103/133 (77.44%), Postives = 111/133 (83.46%), Query Frame = 1

Query: 1   MNPSLPISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MN  +PI   L+A+LLLSPS SLA         GMF PG GF DIPGF KGWDKGI+GGG
Sbjct: 1   MNLFIPIFPFLIAILLLSPSISLATARKDGGFDGMFGPGNGFGDIPGFGKGWDKGIIGGG 60

Query: 61  YGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSRKGFGGGGGGGG 120
           YGGGYGGPKG YGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRS KG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSEKCIGYC 126
           CTIDC++KCIGYC
Sbjct: 121 CTIDCTKKCIGYC 133

BLAST of CmoCh03G004990 vs. NCBI nr
Match: gi|1009108847|ref|XP_015887003.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 162.5 bits (410), Expect = 4.6e-37
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 1

Query: 24  AAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCY 83
           A G+F PGGGF  IPGF KG+  GI+GGGYG GYGGP G Y KGG+IR TVVCKEKGPCY
Sbjct: 60  APGVFGPGGGFG-IPGFGKGFGSGIIGGGYGSGYGGPNGGYSKGGVIRPTVVCKEKGPCY 119

Query: 84  NKKVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
            KK+TCPAKCF+SYSRS KG+G GGGGGGCT+DC +KC+ YC
Sbjct: 120 QKKLTCPAKCFTSYSRSGKGYGSGGGGGGCTMDCKKKCVAYC 160

BLAST of CmoCh03G004990 vs. NCBI nr
Match: gi|802782727|ref|XP_012091528.1| (PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 76/100 (76.00%), Postives = 81/100 (81.00%), Query Frame = 1

Query: 26  GMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNK 85
           G F PG GF  IPGF KGW  GIVGGGYG GYGGP G Y KGGIIR TVVCKE+GPCY K
Sbjct: 54  GYFGPGAGFG-IPGFGKGWGNGIVGGGYGAGYGGPNGGYSKGGIIRPTVVCKERGPCYKK 113

Query: 86  KVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           K+TCPAKCF+SYSRS KG+G GGGGGGCTIDC +KC  YC
Sbjct: 114 KLTCPAKCFTSYSRSGKGYGAGGGGGGCTIDCKKKCTAYC 152

BLAST of CmoCh03G004990 vs. NCBI nr
Match: gi|351721048|ref|NP_001235149.1| (uncharacterized protein LOC100499725 precursor [Glycine max])

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-36
Identity = 85/149 (57.05%), Postives = 97/149 (65.10%), Query Frame = 1

Query: 1   MNPSLPISALLLAVLLLSPSASL------------------------AAGMFEPGGGFDD 60
           M P++ I  L L +L+ SPS +                         A G F PGGGF  
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS- 80

Query: 61  IPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSS 120
           IPGF  G+  GI+GGGYG GYGGP G   KGGIIR TVVCK+KGPC+ KKVTCPAKCFSS
Sbjct: 81  IPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPAKCFSS 140

Query: 121 YSRSRKGFGGGGGGGGCTIDCSEKCIGYC 126
           +SRS KG+GGGGGGGGCTIDC +KCI YC
Sbjct: 141 FSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHJ2_CUCSA6.7e-5177.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516980 PE=4 SV=1[more]
A0A067JDR6_JATCU7.2e-3776.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1[more]
C6SVW2_SOYBN6.1e-3657.05Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1[more]
A0A0B2PLW1_GLYSO1.4e-3556.38Uncharacterized protein OS=Glycine soja GN=glysoja_014337 PE=4 SV=1[more]
V7BT50_PHAVU2.3e-3574.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G190300g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21620.16.6e-3468.75 glycine-rich protein[more]
AT1G61255.16.0e-1952.00 BEST Arabidopsis thaliana protein match is: glycine-rich protein (TA... [more]
Match NameE-valueIdentityDescription
gi|659078783|ref|XP_008439905.1|5.6e-5178.20PREDICTED: RNA-binding protein cabeza-like [Cucumis melo][more]
gi|449433888|ref|XP_004134728.1|9.6e-5177.44PREDICTED: ctenidin-3-like [Cucumis sativus][more]
gi|1009108847|ref|XP_015887003.1|4.6e-3773.53PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Ziziphus... [more]
gi|802782727|ref|XP_012091528.1|1.0e-3676.00PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas][more]
gi|351721048|ref|NP_001235149.1|8.7e-3657.05uncharacterized protein LOC100499725 precursor [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G004990.1CmoCh03G004990.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34789FAMILY NOT NAMEDcoord: 26..125
score: 1.5
NoneNo IPR availablePANTHERPTHR34789:SF1SUBFAMILY NOT NAMEDcoord: 26..125
score: 1.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh03G004990CmoCh07G002600Cucurbita moschata (Rifu)cmocmoB455
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G004990Wild cucumber (PI 183967)cmocpiB681
CmoCh03G004990Cucumber (Chinese Long) v2cmocuB637
CmoCh03G004990Cucumber (Chinese Long) v2cmocuB670
CmoCh03G004990Melon (DHL92) v3.5.1cmomeB581
CmoCh03G004990Melon (DHL92) v3.5.1cmomeB600
CmoCh03G004990Watermelon (Charleston Gray)cmowcgB575
CmoCh03G004990Watermelon (Charleston Gray)cmowcgB576
CmoCh03G004990Watermelon (97103) v1cmowmB623
CmoCh03G004990Watermelon (97103) v1cmowmB640
CmoCh03G004990Cucurbita pepo (Zucchini)cmocpeB609
CmoCh03G004990Cucurbita pepo (Zucchini)cmocpeB631
CmoCh03G004990Bottle gourd (USVL1VR-Ls)cmolsiB581
CmoCh03G004990Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G004990Cucumber (Gy14) v2cgybcmoB811
CmoCh03G004990Melon (DHL92) v3.6.1cmomedB670
CmoCh03G004990Melon (DHL92) v3.6.1cmomedB686
CmoCh03G004990Silver-seed gourdcarcmoB0045
CmoCh03G004990Silver-seed gourdcarcmoB1186
CmoCh03G004990Cucumber (Chinese Long) v3cmocucB0793
CmoCh03G004990Cucumber (Chinese Long) v3cmocucB0797
CmoCh03G004990Watermelon (97103) v2cmowmbB642
CmoCh03G004990Watermelon (97103) v2cmowmbB650
CmoCh03G004990Wax gourdcmowgoB0781
CmoCh03G004990Cucurbita moschata (Rifu)cmocmoB182
CmoCh03G004990Cucurbita moschata (Rifu)cmocmoB335
CmoCh03G004990Cucurbita moschata (Rifu)cmocmoB362
CmoCh03G004990Cucurbita moschata (Rifu)cmocmoB394
CmoCh03G004990Cucurbita moschata (Rifu)cmocmoB428
CmoCh03G004990Cucumber (Gy14) v1cgycmoB0042
CmoCh03G004990Cucurbita maxima (Rimu)cmacmoB235
CmoCh03G004990Cucurbita maxima (Rimu)cmacmoB529