Lsi01G001030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G001030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Photosystem I reaction center subunit X psaK
Location	chr01 : 1082870 .. 1085223 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAAATATGTTTGGTTTTTACTCTTTTCACATGTGAAAAGTAACTTCTGCCCTTAATTGGTATGGTCTTCCTCACATTCCTAAATATTTACCAGCATAGATTTTCAAACATAAAAAGTTGAGTTTCGAAATATAGCCTATTTTAAAAACTATTGAACTGTGACCCCAATCTTTTAGGAGGGACCCGCCATTCAGTAGTTTATTCCATATTTATCCCATGAAGACTCGGTATTCCGTGGTTTTGTAAAAATATCTACAAATAAATTCGTTAGCGATTTGATTTACTTTATCTATCCAAGTTTAGTAGGGGTATATCTGTCAATCTAATCGCCATTTTTGCAAGAAAAAGAAATTCAATGGACTCTTTTTCAAAAACGTCTTCCAGTCGCTCTAGTTTCAAATCTGTGTGAGCCCAGTCGGCACATGTTCATTGGGCTTAAGAATAGGGATCCAGAACCAATCAGCCAAGCCTGGCCCACAGGCCTCTAACCCAAAACCTTATCCGTTGAGAGAAATCCAATAAAACAAAGCCACGTAAGCAACCAGGATCTAAAACTGTATCCAAATCCACCAATCTGAGGCCACAAATTTAGCACCTGTGGCTGAGTGGATGTCGAATTACAAGAATCTCTCAATCTCTTCCTCTTAAATCCATTTATCCTTCGAATAAACAAACACAAGAAAGAAGGGAGAAATTTTTTTTGTCGTAATTAGCAGCAAGAAAATGGCAGCTACCATGATGACTTCGATCCCTCAGTTTAATGGGCTCAGGCCCACTGTTTCAGTGGCTCCGGTTCGCAGCCTGGTAAGTCACCGTCGCCGCCGTAGCCGTCGCTGTTGGCTTTGAATGAGTGGAAAAAGGCTGAAATGTTGTTTGATTTTGCAGGTGGCGGTGCAACCGCTGAGGCGGAGGGGCGGCGGCGCTCTCAGTGCTCGTTGTGGTGATTACATTGGCTCACCTACCAACTTGGTAACTCTCAATTTCCACTACTCATTTTTTTAATTTCAAAATTATTTATATGTTTTCGTTAATATTTATTTTGTCTTTTTTCTTTTTTCAAAGGTTTTATTTTTGTCTTTTAAATTTTAAAGATTTATATTATAATCCCTCAAATTTTGATATCATGAATATCGATTATAGAAATTGAGGATGAAATATAGGAGTAAAGTGCGTTTAGTTGAAAAATAGAATCGAAAGATAGAACTCCATTTATTAACATGTAGAAATAAGTTATTACCTTATTTTTAAAAAATAAAAATCAAATCATTCCCATGTTTAAGATAAATTTTAAATTCAAGTATATAAATGACGGATAGTAATAAAATAAATCATGTTTAATTTGGATCTATAGAGGAAAATATAATTCTTTATTTTCACAAACAAAGTTTAATTTTAGAGAATTGAATATTGCTCTTATAAACCATCATTGCAAACTTGAAGAATCAAAAGAGGTTTGAAATATTTGTTAGGAAGAAAAATTAATTTTCACCTTCAAGCTAAGTTGTGTCGATATTAACTCTTAATGTTACTTTTCATCAAACTATGCCTCAAACTTAGGTATAATTGCTTTTTTAACCTTCATTTTTAAAATATGTTCTAATGTTAATTCTATAATGCTCTAAATATTGTTAAAATAAACTCATCTCTTGTGTGTACAATAAATAATAAAACATATGTGCAGTAAGAAATTGATAAAAAAAAAAATTTTTTTAGAGAAAATGGCATTAGAGCTAAACTTTCTAGTTCAAATTAATGATTTCAGACTAATTTATTCGATGAATAATTCATTAGTCAAAAAGTTTTTATTTGTTTTCTTTTTTTTGGTGTAAAAACTTTAATTGATTAAATTAATGATTTTATGAAGATTTTTTGCACTATTTTTTATTAAAATTAATGGATGAGTTAGGGAAAATGGAAATGAAGGTGAATATTGCAGCACTCAAATTTAATGTGAAATTTGATGAAATCGAAAATAAAATTGATTCTTATTTTTTTTTCCGCTATTTGTTATTTTCTTAAAAGTAATAAAATTACCGAGCAAATCAAAGTGACATAAAATAACAGATGAATGATATGCGTACACGTGACAATGAAACAGATAATGGTGATATCGACAAGCCTGATGCTGTTCGCCGGACGGTTCGGATTGGCTCCATCTGCAAACAGGAAATCAACGGCGGGGCTGAAGCTGGAGGTGAGGGACTCTGGATTACAGACGGGTGACCCAGCGGGTTTCACCCTCGCTGATACTTTGGCATGTGGCAGTGTCGGCCACATCATTGGCGTCGGTGTCGTTCTTGGCCTTAAGAGCATTGGTTCACTGTAAAAATTCTCCTTTTTTTTTTTTTTTTTA

mRNA sequence

CGAAAATATGTTTGGTTTTTACTCTTTTCACATGTGAAAAGTAACTTCTGCCCTTAATTGGTATGGTCTTCCTCACATTCCTAAATATTTACCAGCATAGATTTTCAAACATAAAAAGTTGAGTTTCGAAATATAGCCTATTTTAAAAACTATTGAACTGTGACCCCAATCTTTTAGGAGGGACCCGCCATTCAGTAGTTTATTCCATATTTATCCCATGAAGACTCGGTATTCCGTGGTTTTGTAAAAATATCTACAAATAAATTCGTTAGCGATTTGATTTACTTTATCTATCCAAGTTTAGTAGGGGTATATCTGTCAATCTAATCGCCATTTTTGCAAGAAAAAGAAATTCAATGGACTCTTTTTCAAAAACGTCTTCCAGTCGCTCTAGTTTCAAATCTGTGTGAGCCCAGTCGGCACATGTTCATTGGGCTTAAGAATAGGGATCCAGAACCAATCAGCCAAGCCTGGCCCACAGGCCTCTAACCCAAAACCTTATCCGTTGAGAGAAATCCAATAAAACAAAGCCACGTAAGCAACCAGGATCTAAAACTGTATCCAAATCCACCAATCTGAGGCCACAAATTTAGCACCTGTGGCTGAGTGGATGTCGAATTACAAGAATCTCTCAATCTCTTCCTCTTAAATCCATTTATCCTTCGAATAAACAAACACAAGAAAGAAGGGAGAAATTTTTTTTGTCGTAATTAGCAGCAAGAAAATGGCAGCTACCATGATGACTTCGATCCCTCAGTTTAATGGGCTCAGGCCCACTGTTTCAGTGGCTCCGGTTCGCAGCCTGGTGGCGGTGCAACCGCTGAGGCGGAGGGGCGGCGGCGCTCTCAGTGCTCGTTGTGGTGATTACATTGGCTCACCTACCAACTTGAAATTGAGGATGAAATATAGGAGTAAAATAATGGTGATATCGACAAGCCTGATGCTGTTCGCCGGACGGTTCGGATTGGCTCCATCTGCAAACAGGAAATCAACGGCGGGGCTGAAGCTGGAGGTGAGGGACTCTGGATTACAGACGGGTGACCCAGCGGGTTTCACCCTCGCTGATACTTTGGCATGTGGCAGTGTCGGCCACATCATTGGCGTCGGTGTCGTTCTTGGCCTTAAGAGCATTGGTTCACTGTAAAAATTCTCCTTTTTTTTTTTTTTTTTA

Coding sequence (CDS)

ATGGCAGCTACCATGATGACTTCGATCCCTCAGTTTAATGGGCTCAGGCCCACTGTTTCAGTGGCTCCGGTTCGCAGCCTGGTGGCGGTGCAACCGCTGAGGCGGAGGGGCGGCGGCGCTCTCAGTGCTCGTTGTGGTGATTACATTGGCTCACCTACCAACTTGAAATTGAGGATGAAATATAGGAGTAAAATAATGGTGATATCGACAAGCCTGATGCTGTTCGCCGGACGGTTCGGATTGGCTCCATCTGCAAACAGGAAATCAACGGCGGGGCTGAAGCTGGAGGTGAGGGACTCTGGATTACAGACGGGTGACCCAGCGGGTTTCACCCTCGCTGATACTTTGGCATGTGGCAGTGTCGGCCACATCATTGGCGTCGGTGTCGTTCTTGGCCTTAAGAGCATTGGTTCACTGTAA

Protein sequence

MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMKYRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKSIGSL

Homology

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BLAST of Lsi01G001030 vs. Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-48
Identity = 103/140 (73.57%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPT-VSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRM 60
           MA+TMMT++PQFNGLR T +S APV+ L +VQP+RR+G GAL A+C D+IGS TNL    
Sbjct: 1   MASTMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKC-DFIGSSTNL---- 60

Query: 61  KYRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG 120
                IMV ST+LMLFAGRFGLAPSANRK+TAGL+LE RDSGLQTGDPAGFTLADTLACG
Sbjct: 61  -----IMVTSTTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACG 120

Query: 121 SVGHIIGVGVVLGLKSIGSL 140
           +VGHIIGVGVVLGLK+IG++
Sbjct: 121 TVGHIIGVGVVLGLKNIGAI 130

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BLAST of Lsi01G001030 vs. Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-44
Identity = 96/137 (70.07%), Postives = 113/137 (82.48%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPL-RRRGGGALSARCGDYIGSPTNLKLRM 60
           MA +MMT++PQF GLRP +  +P++ LVA QP+ RR+G GAL  RC D+IGS TN+    
Sbjct: 1   MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRC-DFIGSSTNV---- 60

Query: 61  KYRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG 120
                IMV ST+LMLFAGRFGLAPSANRK+TAGLKLE RDSGLQTGDPAGFTLADTLACG
Sbjct: 61  -----IMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACG 120

Query: 121 SVGHIIGVGVVLGLKSI 137
           +VGHIIGVGVVLGL+++
Sbjct: 121 TVGHIIGVGVVLGLRTL 127

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BLAST of Lsi01G001030 vs. Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.8e-37
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 6   MTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMKYRSKI 65
           MTS+PQF+GLR   + +  RS+  +  LRRR    +  RC DYIGS TNL         I
Sbjct: 8   MTSVPQFHGLR---TYSSPRSMATLPSLRRRRSQGI--RC-DYIGSSTNL---------I 67

Query: 66  MVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHII 125
           MV +T+LMLFAGRFGLAPSANRK+TAGLKLE R+SGLQTGDPAGFTLADTLACG+VGHI+
Sbjct: 68  MVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIM 126

Query: 126 GVGVVLGLKSIGSL 140
           GVG+VLGLK+ G L
Sbjct: 128 GVGIVLGLKNTGVL 126

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BLAST of Lsi01G001030 vs. Swiss-Prot
Match: PSAK_CHLRE (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-17
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 29  AVQPLRRRGGGALSARCGDYIGSPTNLKLRMKYRSKIMVISTSLMLFAGRFGLAPSANRK 88
           A++P +     ++  R   +IGS TNL         IMV ST+  L A RFGLAP+  + 
Sbjct: 10  AIRPTKAARRSSVVVRADGFIGSSTNL---------IMVASTTATLAAARFGLAPTVKKN 69

Query: 89  STAGLKL--EVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKSIGSL 140
           +TAGLKL      +G+ + DPAGFT+ D LA G+ GH +GVG+VLGLK IG+L
Sbjct: 70  TTAGLKLVDSKNSAGVISNDPAGFTIVDVLAMGAAGHGLGVGIVLGLKGIGAL 113

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BLAST of Lsi01G001030 vs. Swiss-Prot
Match: PSAK_CUCSA (Photosystem I reaction center subunit psaK, chloroplastic (Fragment) OS=Cucumis sativus GN=PSAK PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 47 DYIGSPTNLKLRMKYRSKIMVISTSLMLFAGRFGLAPSANR 88
          DYIGSPTN+         IMVISTSLMLFAGRFGLAPSANR
Sbjct: 2  DYIGSPTNV---------IMVISTSLMLFAGRFGLAPSANR 33

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BLAST of Lsi01G001030 vs. TrEMBL
Match: A0A0A0KM49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525340 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-55
Identity = 121/136 (88.97%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 4   TMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMKYRS 63
           TMMT +PQFNGLRPT SV PVRSLVAVQPLRRRGGGALSARCGDYIGSPTNL        
Sbjct: 6   TMMTFVPQFNGLRPTTSV-PVRSLVAVQPLRRRGGGALSARCGDYIGSPTNL-------- 65

Query: 64  KIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGH 123
            IMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG+VGH
Sbjct: 66  -IMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGTVGH 125

Query: 124 IIGVGVVLGLKSIGSL 140
           IIGVGVVLGLK IGSL
Sbjct: 126 IIGVGVVLGLKGIGSL 131

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BLAST of Lsi01G001030 vs. TrEMBL
Match: A0A061DVW2_THECC (Photosystem I subunit K OS=Theobroma cacao GN=TCM_006076 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-50
Identity = 109/139 (78.42%), Postives = 120/139 (86.33%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMK 60
           MAAT MT++PQF+GLRP +S APVR L AVQP+RR+G GAL ARCG YIGSPTNL     
Sbjct: 1   MAATAMTTLPQFSGLRPRISAAPVRGLAAVQPMRRKGKGALGARCG-YIGSPTNL----- 60

Query: 61  YRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGS 120
               IMV +TSLMLFAGRFGLAPSANRK+TAGLKLE RDSGLQTGDPAGFTLADTLACGS
Sbjct: 61  ----IMVTTTSLMLFAGRFGLAPSANRKATAGLKLEARDSGLQTGDPAGFTLADTLACGS 120

Query: 121 VGHIIGVGVVLGLKSIGSL 140
           VGHIIGVG+VLGLK+IG+L
Sbjct: 121 VGHIIGVGIVLGLKNIGAL 129

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BLAST of Lsi01G001030 vs. TrEMBL
Match: Q84QE6_TOBAC (Photosystem I reaction center subunit X psaK OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.2e-50
Identity = 112/140 (80.00%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRP-TVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRM 60
           MAATMMTS+PQFNGL+P T S +PV+ LVAVQP+RR+G GAL ARC D+IGSPTNL    
Sbjct: 1   MAATMMTSLPQFNGLKPKTFSTSPVQGLVAVQPMRRKGQGALGARC-DFIGSPTNL---- 60

Query: 61  KYRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG 120
                IMV STSLMLFAGRFGLAPSANRK+TAGLKLEVRDSGLQTGDPAGFTLADTLACG
Sbjct: 61  -----IMVTSTSLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACG 120

Query: 121 SVGHIIGVGVVLGLKSIGSL 140
            VGHIIGVGVVLGLK+IG+L
Sbjct: 121 VVGHIIGVGVVLGLKNIGAL 130

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BLAST of Lsi01G001030 vs. TrEMBL
Match: D5L5T2_GARJA (Putative photosystem I reaction center subunit X OS=Gardenia jasminoides PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-49
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRP-TVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRM 60
           MA+ +M S+PQFNGLRP T + +PV+SL+AVQP++R+G GAL ARCG YIGSPTNL    
Sbjct: 1   MASAVMISLPQFNGLRPKTATFSPVQSLLAVQPMKRKGQGALGARCG-YIGSPTNL---- 60

Query: 61  KYRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG 120
                IMVISTSLMLFAGRFGLAPSANRKSTAGLKLE+RDSGLQTGDPAGFTLADTLACG
Sbjct: 61  -----IMVISTSLMLFAGRFGLAPSANRKSTAGLKLEIRDSGLQTGDPAGFTLADTLACG 120

Query: 121 SVGHIIGVGVVLGLKSIGSL 140
           SVGHIIGVGVVLGLK IG+L
Sbjct: 121 SVGHIIGVGVVLGLKGIGAL 130

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BLAST of Lsi01G001030 vs. TrEMBL
Match: A5CAM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038784 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-49
Identity = 108/139 (77.70%), Postives = 120/139 (86.33%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMK 60
           MA T+MT++PQFNGLRP  S +PV++L AVQP+RR+G GAL ARC D+IGSPTNL     
Sbjct: 1   MATTVMTTLPQFNGLRPKSSTSPVQTLAAVQPMRRKGXGALGARC-DFIGSPTNL----- 60

Query: 61  YRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGS 120
               IMV STSLMLFAGRFGLAPSANRK+TAGLKLEVRDSGLQTGDPAGFTLADTLACG+
Sbjct: 61  ----IMVTSTSLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGT 120

Query: 121 VGHIIGVGVVLGLKSIGSL 140
           VGHIIGVGVVLGLK+IG L
Sbjct: 121 VGHIIGVGVVLGLKNIGVL 129

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BLAST of Lsi01G001030 vs. TAIR10
Match: AT1G30380.1 (AT1G30380.1 photosystem I subunit K)

HSP 1 Score: 193.4 bits (490), Expect = 9.6e-50
Identity = 103/140 (73.57%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPT-VSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRM 60
           MA+TMMT++PQFNGLR T +S APV+ L +VQP+RR+G GAL A+C D+IGS TNL    
Sbjct: 1   MASTMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKC-DFIGSSTNL---- 60

Query: 61  KYRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG 120
                IMV ST+LMLFAGRFGLAPSANRK+TAGL+LE RDSGLQTGDPAGFTLADTLACG
Sbjct: 61  -----IMVTSTTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACG 120

Query: 121 SVGHIIGVGVVLGLKSIGSL 140
           +VGHIIGVGVVLGLK+IG++
Sbjct: 121 TVGHIIGVGVVLGLKNIGAI 130

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BLAST of Lsi01G001030 vs. NCBI nr
Match: gi|659078148|ref|XP_008439573.1| (PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 125/139 (89.93%), Postives = 126/139 (90.65%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMK 60
           MAATMMT +PQFNGLRPT SVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNL     
Sbjct: 1   MAATMMTFVPQFNGLRPTASVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNL----- 60

Query: 61  YRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGS 120
               IMVISTSLMLFAGRFGLAPSANRKSTAGLKLE RDSGLQTGDPAGFTLADTLACGS
Sbjct: 61  ----IMVISTSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGS 120

Query: 121 VGHIIGVGVVLGLKSIGSL 140
           VGHIIGVGVVLGLK IGSL
Sbjct: 121 VGHIIGVGVVLGLKGIGSL 130

[Close]

BLAST of Lsi01G001030 vs. NCBI nr
Match: gi|449433712|ref|XP_004134641.1| (PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 121/136 (88.97%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 4   TMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMKYRS 63
           TMMT +PQFNGLRPT SV PVRSLVAVQPLRRRGGGALSARCGDYIGSPTNL        
Sbjct: 6   TMMTFVPQFNGLRPTTSV-PVRSLVAVQPLRRRGGGALSARCGDYIGSPTNL-------- 65

Query: 64  KIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGH 123
            IMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG+VGH
Sbjct: 66  -IMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGTVGH 125

Query: 124 IIGVGVVLGLKSIGSL 140
           IIGVGVVLGLK IGSL
Sbjct: 126 IIGVGVVLGLKGIGSL 131

[Close]

BLAST of Lsi01G001030 vs. NCBI nr
Match: gi|590681566|ref|XP_007041118.1| (Photosystem I subunit K [Theobroma cacao])

HSP 1 Score: 205.7 bits (522), Expect = 5.3e-50
Identity = 109/139 (78.42%), Postives = 120/139 (86.33%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMK 60
           MAAT MT++PQF+GLRP +S APVR L AVQP+RR+G GAL ARCG YIGSPTNL     
Sbjct: 1   MAATAMTTLPQFSGLRPRISAAPVRGLAAVQPMRRKGKGALGARCG-YIGSPTNL----- 60

Query: 61  YRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGS 120
               IMV +TSLMLFAGRFGLAPSANRK+TAGLKLE RDSGLQTGDPAGFTLADTLACGS
Sbjct: 61  ----IMVTTTSLMLFAGRFGLAPSANRKATAGLKLEARDSGLQTGDPAGFTLADTLACGS 120

Query: 121 VGHIIGVGVVLGLKSIGSL 140
           VGHIIGVG+VLGLK+IG+L
Sbjct: 121 VGHIIGVGIVLGLKNIGAL 129

[Close]

BLAST of Lsi01G001030 vs. NCBI nr
Match: gi|1009105558|ref|XP_015879055.1| (PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 204.9 bits (520), Expect = 9.0e-50
Identity = 106/139 (76.26%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRMK 60
           MA T+ TS+PQFNGLRPT+S APV+SL AVQP++R+  GAL ARC  +IGSPTNL     
Sbjct: 1   MATTVATSLPQFNGLRPTISAAPVKSLAAVQPMKRKANGALGARCDGFIGSPTNL----- 60

Query: 61  YRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGS 120
               I+V ST+LMLFAGRFGLAPSANRK+TAGLKLE RDSGLQTGDPAGFTLADTLACGS
Sbjct: 61  ----IIVTSTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGS 120

Query: 121 VGHIIGVGVVLGLKSIGSL 140
           VGHIIGVGVVLGLK+IG+L
Sbjct: 121 VGHIIGVGVVLGLKNIGAL 130

[Close]

BLAST of Lsi01G001030 vs. NCBI nr
Match: gi|698481680|ref|XP_009787811.1| (PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-49
Identity = 112/140 (80.00%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 1   MAATMMTSIPQFNGLRP-TVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLKLRM 60
           MAATMMTS+PQFNGL+P T S +PV+ LVAVQP+RR+G GAL ARC D+IGSPTNL    
Sbjct: 1   MAATMMTSLPQFNGLKPKTFSTSPVQGLVAVQPMRRKGQGALGARC-DFIGSPTNL---- 60

Query: 61  KYRSKIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACG 120
                IMV STSLMLFAGRFGLAPSANRK+TAGLKLEVRDSGLQTGDPAGFTLADTLACG
Sbjct: 61  -----IMVTSTSLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACG 120

Query: 121 SVGHIIGVGVVLGLKSIGSL 140
            VGHIIGVGVVLGLK+IG+L
Sbjct: 121 VVGHIIGVGVVLGLKNIGAL 130

The following BLAST results are available for this feature:

BLAST of Lsi01G001030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAK_ARATH	1.7e-48	73.57	Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thalian...	[more]
PSAK_MEDSA	1.5e-44	70.07	Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=...	[more]
PSAK_HORVU	8.8e-37	65.67	Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=...	[more]
PSAK_CHLRE	1.6e-17	46.02	Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinh...	[more]
PSAK_CUCSA	1.9e-07	75.61	Photosystem I reaction center subunit psaK, chloroplastic (Fragment) OS=Cucumis ...	[more]

BLAST of Lsi01G001030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM49_CUCSA	1.0e-55	88.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525340 PE=4 SV=1	[more]
A0A061DVW2_THECC	3.7e-50	78.42	Photosystem I subunit K OS=Theobroma cacao GN=TCM_006076 PE=4 SV=1	[more]
Q84QE6_TOBAC	8.2e-50	80.00	Photosystem I reaction center subunit X psaK OS=Nicotiana tabacum PE=2 SV=1	[more]
D5L5T2_GARJA	3.1e-49	78.57	Putative photosystem I reaction center subunit X OS=Gardenia jasminoides PE=2 SV...	[more]
A5CAM0_VITVI	3.1e-49	77.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038784 PE=4 SV=1	[more]

BLAST of Lsi01G001030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30380.1	9.6e-50	73.57	photosystem I subunit K	[more]

BLAST of Lsi01G001030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078148\|ref\|XP_008439573.1\|	1.4e-58	89.93	PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Cucumis me...	[more]
gi\|449433712\|ref\|XP_004134641.1\|	1.4e-55	88.97	PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Cucumis sa...	[more]
gi\|590681566\|ref\|XP_007041118.1\|	5.3e-50	78.42	Photosystem I subunit K [Theobroma cacao]	[more]
gi\|1009105558\|ref\|XP_015879055.1\|	9.0e-50	76.26	PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Ziziphus j...	[more]
gi\|698481680\|ref\|XP_009787811.1\|	1.2e-49	80.00	PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Nicotiana ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016168	chlorophyll binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR023618	PSI_PsaG/PsaK_dom
IPR017493	PSAK
IPR000549	PSI_PsaG/PsaK

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0070838	divalent metal ion transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001030.1	Lsi01G001030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000549	Photosystem I PsaG/PsaK protein	PFAM	PF01241	PSI_PSAK	coord: 65..137 score: 1.3
IPR000549	Photosystem I PsaG/PsaK protein	PROSITE	PS01026	PHOTOSYSTEM_I_PSAGK	coord: 109..126 scor
IPR000549	Photosystem I PsaG/PsaK protein	unknown	SSF81563	Photosystem I reaction center subunit X, PsaK	coord: 107..133 score: 1.5
IPR017493	Photosystem I PsaK, reaction centre, plant	TIGRFAMs	TIGR03050	TIGR03050	coord: 48..139 score: 1.1
IPR023618	Photosystem I PsaG/PsaK domain	GENE3D	G3DSA:1.10.286.40		coord: 63..137 score: 3.6
None	No IPR available	PANTHER	PTHR34195	FAMILY NOT NAMED	coord: 1..139 score: 2.2
None	No IPR available	PANTHER	PTHR34195:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC	coord: 1..139 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G001030	Csa6G525340	Cucumber (Chinese Long) v2	culsiB434
Lsi01G001030	CSPI06G36720	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G001030	Cucsa.048130	Cucumber (Gy14) v1	cgylsiB022
Lsi01G001030	CmaCh03G014360	Cucurbita maxima (Rimu)	cmalsiB602
Lsi01G001030	CmaCh07G000730	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G001030	CmoCh03G014320	Cucurbita moschata (Rifu)	cmolsiB588
Lsi01G001030	CmoCh07G000720	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G001030	Cla009814	Watermelon (97103) v1	lsiwmB144
Lsi01G001030	MELO3C007091	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G001030	ClCG01G025030	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G001030	MELO3C007091.2	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G001030	Cla97C01G025040	Watermelon (97103) v2	lsiwmbB115
Lsi01G001030	Bhi03G000125	Wax gourd	lsiwgoB179
Lsi01G001030	Cp4.1LG10g06250	Cucurbita pepo (Zucchini)	cpelsiB049
Lsi01G001030	CsGy6G036100	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G001030	Carg19302	Silver-seed gourd	carlsiB273
Lsi01G001030	Carg14979	Silver-seed gourd	carlsiB669
Lsi01G001030	CsaV3_6G052210	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G001030	Cucurbita pepo (Zucchini)	cpelsiB396