Lsi01G000220 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GAACAGAAGCGGGGAGAATGTATATGTAGAGTTCACCCATTGGTTTTCTCAAACTTGGGACGAAAGGTATGCGAAAGCAAGCTCCCTCCATTGTATAAGTATCCAAAACCTTTTCATCCCCCAAACCCCATTTGTATATATATCTTCCTCTCTCGCCTCGCCTTCTTCATCATTTAATTCAACCAACGTCCTGCTCAAGCTTTTACCTTCTGATGACATTGTGATTTATCCCAACCATTGCAAATTTTGCATCTTTTTGGCTTCTGGGTATGTTTTCGCACCATCTTATTCATTGGAGTCTCTTACTCTCTCTCTCTCTCTTTATCTCCTACTCCCTGTAGTCTTTTGTTGTTATGAGTGTTGTGATTTTGATCTTAAACTTTTCTCCATATTCTTGACTGAATCGAAGTTTTCTGTTTCTCCTTGTATTGGGAATTTTTTACTGTTGCCGGTTAATCAATCAGTTGAGAAATTTATGCAACATTGTCTGTCCAGATTATTTTCAATGATCTGATTGTAGTTGTTTGCTTGTTTGGTTTTCTGAAGAAAGTCAAACTTCTTTTTTTCTTTACATTTTTTAATCGTTTATATGAGGATCTGTAAGTGAGTGAAGAACATTTTTCTTGCTCCACAGTTGGTTCTCGACTCTGTTAGTAGCTCTGAACTCTGAAGTGAAGCTAACCTTATTCATGGCCTTCATGTTCATTGATTAAAGTAACCTATGTACACTATTTCTGCAACTTTCTTTCTTGATATCTCCCCGAAGAAAAAGGCCTCAGGGTAGACATTGATGTATTTGATGATCGAAAATCTTTTTGGCGCTTTGATATTTGTAGATTCTTCTTTGATCAATAAAATTATACACTGTAGAATTTCCTCAACAGGAGCTGACTTCCTAATTTATTATATTTTTCTTTGTTAGGTCTGCTAAGTGTGTTGGCGTTGATATTTTACTTTTGGCTAAATGTATTGATAAGTCTCGTGTGTGGTTTTTCAATTTTGTTCCTATTCTTTCAACATTTGCGATTTTCTTGTAAGGTATCAAATTACTTCAATTGAATCCTTGATGTGAAATTTAACATGTATTGAAAAATAAAATGGTTGGTATTGCCAATCTCTGTGTGTTGGAAAAAAAGTGAAATCCTTTTAAATTTTTACATGCTACCGAAAACTTATCTTTCTCTTTCCATCGATCAAACTCTTTCCTTCCATCTCCCTCTTACTTTCTCGATCTCTCCAAACCCCTCTGTTTCTCGCACTCACTCAGCCTTTCTCTCTTACTGCCACAATTTCCCTCACATTTGGTCTTTTTCACTGTCTCTAGCTCTGTCCTTTTCTTATTTTGATTTGTTCAAGTAATGGTCAGGTGAAAGATGAAAAGTAGTCAAATGGGTCCTTTAACTTTTATGAACAAAGGAGAATTGCGTTGAAATACATTGACACAGTAGGGAGCAAATAGAACGTTTTTCAAAAAAGAGGGGAATGAAATTGAAAAACTGTCTTAGGGATTAATATTTATATTTAGATTTGAATTTTTCATTATCAGTTAAACTGCCTTAAATCTAATGGACATTGACGTCTGCACCCAGAAGATTAAAGGCCTGGTTTTTGTAACCCCCCCACCCCTTCCTTTTTTTGGTTATATTTCATCATATCAACGAGCATTTGTTTCTCATTAAAAAAAATAAAATAACCCCCCCCCCAACAAATTATCTAGTAAGCTACAGTAGGAACCTTAAAATATCGGGTTATTAGTTGATTGAAGGGAATACTGTGAGATGCTTTAAGTTGTTCATAAAGATCAAAGAGGGGATCAACAAACTACCTGGTATTGGAGTTTAAGAAAATTATAAATTGCAACTGACTCGCAGCATAGATATGTACTTGTTATTTTTTTGCTCATTGGTCAAATTATCGTCTTTCCTTATTTTTCATCACTTAATTTTTTCGCATGCATTTTGCTATTAGAATCATTCACCATCTTATTAAACTTGTGGCATGAACCAAAAGGTCTAAATTGTGAACTTATGTACAAAAAGGTCAGAGTATTTGGAATTTATGGAGAAATGACATTTGTTTTTGTATTTCAACACTAAAGTTGAATTGTCCGCAGAACACGTTGCTTTTTATCTGCTTGAACAGGTGTTGTGCATTGATAACCTAAGATGTTCATGTACTTAAATGCAGGTTAATGCTGTAGCTGGCTGCTTGTTTGAAGTCTGTTAGCTGGGTGCTTTCAGATAAAATTCCATTAGCAGCGATTGTTGATATCATTCACTTTGGAACCGCAACGTTTTCTTCATTAAAATGTCGCTCTTGTCAAAGTTGCGCTGTGTCACCATAGATGTTACTGGTACATTGTTAGCTTACAAAGGGGAGCTTGGTGATTACTATTGCATGGCAGCCAAATCCGTGGGGCTGCCATGCCCTGATTACAAACGTGTGCACGAGGGCTTTAAACTTGCTTACAAGGAGATGGCAAAAAACTATCCATGTTTTGGATATGCAGCAAAAATGCCTAACATCGTTTGGTGGAAAACTTGCGTTAGAGATTCCTTTACCAGGGTAAGAGATCGATATAGCCATCTAGAAGATATACAGGCATGACATTTTGCATAGCATGTAGTTCATAGTATTAGATTCATGGGAATCACATTTGTTAGAATATCTTTTCCACATTCTCTTCAGGCAATCACATTTGTAAGAAATTTCTCTCCACATTCTCTTCAAGCAATCACATTTGTCAGAATTTTCTCCCCACACTCTGTTTTGAAGGCATAGACAGTCTGAGTCAAACCTGTTGTTATATTATATGTAGAATGGGAGAAAGAAACATCAACTGCTAGCTCATTGAAAGAAAACCTTAGACTACAATTTGCACATCGTTGGAAAATTTTTATGACGTGAAACTTCTTGTTTTACCGATAGGCTGGATATGATTATGATGAGGAGACTTTTGAGAAGGTGTTTAGACGTATATATGCATCCTTTGGGTCATCTGCTCCTTATAAGGTGTTCGAAGATTCCCAACCATTTCTTAGATGGGTGCGTGAGCAAGGTCTTATGGTTGGCATTGTGAGTAATGCAGAGTACCGGTATCAGGATGTGATCCTTCCAGCTTTAGGCTTGAATCAGGTATGTATGAACTCATTGTTCCCTTTCTTTTTCTTTTCTTTTTTTGTATACTGTACATCTAGATTTTGGTCTTATGATAAGATGGAGATGACTTTTAAAAAAATGTAATTTAAAATGAAATTCAAAGCACTCTTGAAAATGGCATTAATAAGGTGCTTCGAAGATTACTTTTAAGTGGTTTTTAAGTATTTCAGAATTTTTTTTTTCAATATCACTACCATTTGCATTTGGAGGAAAAATGATGTGATAGTATACATATGAATGCAAATGGCCATTTCTCATTTCCATGGTTTAAAAAATGATACTTAGAATCCTTCCTTCTGATATTAGTGTATTTTGTACCACACTGAGTAGTGGGTAGGGGTACTCTGTTTTGTTTTAAGAGTGTTCTTCTTCCTGATTACACGAGCAAGATCTACTGATTGATATTGTGCTTAATGACTATTCAGGGATCAGAATGGGACTTCGGTGTATTCTCCGGTCTTGAGGGTGTGGAGAAACCAGATCCTAGAATCTACGAGATTGCGATCGAGAGGGCTGGAAATATAGCACCAGAAGAAGCTCTCCACATTGGAGACAGCTTGCGAAAAGATTATATTCCTGCAAAGAGTGTGGGAATGCATGGTCTGTTATTGGATAGATTTAAGACATCAGATGCTGAGGAATGGAGGAAATCTGGGGCAGTGGTGCTTCCCGATCTGGTGGCTGCTCAAGACTGGCTTCAGAATAACTGA GAACAGAAGCGGGGAGAATGTATATGTAGAGTTCACCCATTGGTTTTCTCAAACTTGGGACGAAAGGTATGCGAAAGCAAGCTCCCTCCATTGTATAAGTATCCAAAACCTTTTCATCCCCCAAACCCCATTTGTATATATATCTTCCTCTCTCGCCTCGCCTTCTTCATCATTTAATTCAACCAACGTCCTGCTCAAGCTTTTACCTTCTGATGACATTGTGATTTATCCCAACCATTGCAAATTTTGCATCTTTTTGGCTTCTGGGTTAATGCTGTAGCTGGCTGCTTGTTTGAAGTCTGTTAGCTGGGTGCTTTCAGATAAAATTCCATTAGCAGCGATTGTTGATATCATTCACTTTGGAACCGCAACGTTTTCTTCATTAAAATGTCGCTCTTGTCAAAGTTGCGCTGTGTCACCATAGATGTTACTGGTACATTGTTAGCTTACAAAGGGGAGCTTGGTGATTACTATTGCATGGCAGCCAAATCCGTGGGGCTGCCATGCCCTGATTACAAACGTGTGCACGAGGGCTTTAAACTTGCTTACAAGGAGATGGCAAAAAACTATCCATGTTTTGGATATGCAGCAAAAATGCCTAACATCGTTTGGTGGAAAACTTGCGTTAGAGATTCCTTTACCAGGGCTGGATATGATTATGATGAGGAGACTTTTGAGAAGGTGTTTAGACGTATATATGCATCCTTTGGGTCATCTGCTCCTTATAAGGTGTTCGAAGATTCCCAACCATTTCTTAGATGGGTGCGTGAGCAAGGTCTTATGGTTGGCATTGTGAGTAATGCAGAGTACCGGTATCAGGATGTGATCCTTCCAGCTTTAGGCTTGAATCAGGGATCAGAATGGGACTTCGGTGTATTCTCCGGTCTTGAGGGTGTGGAGAAACCAGATCCTAGAATCTACGAGATTGCGATCGAGAGGGCTGGAAATATAGCACCAGAAGAAGCTCTCCACATTGGAGACAGCTTGCGAAAAGATTATATTCCTGCAAAGAGTGTGGGAATGCATGGTCTGTTATTGGATAGATTTAAGACATCAGATGCTGAGGAATGGAGGAAATCTGGGGCAGTGGTGCTTCCCGATCTGGTGGCTGCTCAAGACTGGCTTCAGAATAACTGA ATGTCGCTCTTGTCAAAGTTGCGCTGTGTCACCATAGATGTTACTGGTACATTGTTAGCTTACAAAGGGGAGCTTGGTGATTACTATTGCATGGCAGCCAAATCCGTGGGGCTGCCATGCCCTGATTACAAACGTGTGCACGAGGGCTTTAAACTTGCTTACAAGGAGATGGCAAAAAACTATCCATGTTTTGGATATGCAGCAAAAATGCCTAACATCGTTTGGTGGAAAACTTGCGTTAGAGATTCCTTTACCAGGGCTGGATATGATTATGATGAGGAGACTTTTGAGAAGGTGTTTAGACGTATATATGCATCCTTTGGGTCATCTGCTCCTTATAAGGTGTTCGAAGATTCCCAACCATTTCTTAGATGGGTGCGTGAGCAAGGTCTTATGGTTGGCATTGTGAGTAATGCAGAGTACCGGTATCAGGATGTGATCCTTCCAGCTTTAGGCTTGAATCAGGGATCAGAATGGGACTTCGGTGTATTCTCCGGTCTTGAGGGTGTGGAGAAACCAGATCCTAGAATCTACGAGATTGCGATCGAGAGGGCTGGAAATATAGCACCAGAAGAAGCTCTCCACATTGGAGACAGCTTGCGAAAAGATTATATTCCTGCAAAGAGTGTGGGAATGCATGGTCTGTTATTGGATAGATTTAAGACATCAGATGCTGAGGAATGGAGGAAATCTGGGGCAGTGGTGCTTCCCGATCTGGTGGCTGCTCAAGACTGGCTTCAGAATAACTGA MSLLSKLRCVTIDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGYAAKMPNIVWWKTCVRDSFTRAGYDYDEETFEKVFRRIYASFGSSAPYKVFEDSQPFLRWVREQGLMVGIVSNAEYRYQDVILPALGLNQGSEWDFGVFSGLEGVEKPDPRIYEIAIERAGNIAPEEALHIGDSLRKDYIPAKSVGMHGLLLDRFKTSDAEEWRKSGAVVLPDLVAAQDWLQNN
BLAST of Lsi01G000220 vs. Swiss-Prot
Match: HDHD3_MOUSE (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=1 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 4.6e-28 Identity = 72/212 (33.96%), Postives = 118/212 (55.66%), Query Frame = 1
BLAST of Lsi01G000220 vs. Swiss-Prot
Match: HDHD3_DANRE (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Danio rerio GN=hdhd3 PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 6.0e-28 Identity = 73/213 (34.27%), Postives = 113/213 (53.05%), Query Frame = 1
BLAST of Lsi01G000220 vs. Swiss-Prot
Match: HDHD3_BOVIN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 PE=2 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 7.8e-28 Identity = 72/212 (33.96%), Postives = 118/212 (55.66%), Query Frame = 1
BLAST of Lsi01G000220 vs. Swiss-Prot
Match: REG2_DROME (Rhythmically expressed gene 2 protein OS=Drosophila melanogaster GN=Reg-2 PE=2 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.2e-21 Identity = 68/227 (29.96%), Postives = 110/227 (48.46%), Query Frame = 1
BLAST of Lsi01G000220 vs. Swiss-Prot
Match: HDHD3_XENLA (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 9.3e-21 Identity = 63/222 (28.38%), Postives = 109/222 (49.10%), Query Frame = 1
BLAST of Lsi01G000220 vs. TrEMBL
Match: A0A0A0KJ36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G532590 PE=4 SV=1) HSP 1 Score: 517.7 bits (1332), Expect = 7.9e-144 Identity = 242/249 (97.19%), Postives = 247/249 (99.20%), Query Frame = 1
BLAST of Lsi01G000220 vs. TrEMBL
Match: A0A059CCH3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00011 PE=4 SV=1) HSP 1 Score: 484.2 bits (1245), Expect = 9.6e-134 Identity = 220/249 (88.35%), Postives = 238/249 (95.58%), Query Frame = 1
BLAST of Lsi01G000220 vs. TrEMBL
Match: W9RRW5_9ROSA (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Morus notabilis GN=L484_003872 PE=4 SV=1) HSP 1 Score: 481.9 bits (1239), Expect = 4.8e-133 Identity = 218/249 (87.55%), Postives = 237/249 (95.18%), Query Frame = 1
BLAST of Lsi01G000220 vs. TrEMBL
Match: A0A067GPK8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039449mg PE=4 SV=1) HSP 1 Score: 481.1 bits (1237), Expect = 8.2e-133 Identity = 218/246 (88.62%), Postives = 238/246 (96.75%), Query Frame = 1
BLAST of Lsi01G000220 vs. TrEMBL
Match: V4UCF9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016366mg PE=4 SV=1) HSP 1 Score: 479.9 bits (1234), Expect = 1.8e-132 Identity = 218/246 (88.62%), Postives = 238/246 (96.75%), Query Frame = 1
BLAST of Lsi01G000220 vs. TAIR10
Match: AT5G44730.2 (AT5G44730.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 431.0 bits (1107), Expect = 4.9e-121 Identity = 190/250 (76.00%), Postives = 231/250 (92.40%), Query Frame = 1
BLAST of Lsi01G000220 vs. TAIR10
Match: AT2G41250.1 (AT2G41250.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 55.1 bits (131), Expect = 7.3e-08 Identity = 40/138 (28.99%), Postives = 65/138 (47.10%), Query Frame = 1
BLAST of Lsi01G000220 vs. NCBI nr
Match: gi|449433485|ref|XP_004134528.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Cucumis sativus]) HSP 1 Score: 517.7 bits (1332), Expect = 1.1e-143 Identity = 242/249 (97.19%), Postives = 247/249 (99.20%), Query Frame = 1
BLAST of Lsi01G000220 vs. NCBI nr
Match: gi|702315636|ref|XP_010051810.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Eucalyptus grandis]) HSP 1 Score: 484.2 bits (1245), Expect = 1.4e-133 Identity = 220/249 (88.35%), Postives = 238/249 (95.58%), Query Frame = 1
BLAST of Lsi01G000220 vs. NCBI nr
Match: gi|703100893|ref|XP_010097041.1| (Haloacid dehalogenase-like hydrolase domain-containing protein 3 [Morus notabilis]) HSP 1 Score: 481.9 bits (1239), Expect = 6.9e-133 Identity = 218/249 (87.55%), Postives = 237/249 (95.18%), Query Frame = 1
BLAST of Lsi01G000220 vs. NCBI nr
Match: gi|568828477|ref|XP_006468570.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Citrus sinensis]) HSP 1 Score: 481.1 bits (1237), Expect = 1.2e-132 Identity = 218/246 (88.62%), Postives = 238/246 (96.75%), Query Frame = 1
BLAST of Lsi01G000220 vs. NCBI nr
Match: gi|567912583|ref|XP_006448605.1| (hypothetical protein CICLE_v10016366mg [Citrus clementina]) HSP 1 Score: 479.9 bits (1234), Expect = 2.6e-132 Identity = 218/246 (88.62%), Postives = 238/246 (96.75%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|