Cucsa.394110 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.394110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cellular retinaldehyde-binding/triple function, C-terminal
Location	scaffold04100 : 170342 .. 171762 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCACAAAAACTTATTTCTACCATTTAACGACAAAACTCTGTTTCTATATAATTACCGAACCGAACCGATCTCGCATAGACAAATTCCATCCCACTTCTTAACAAAAGAGAAAAGGGAAGTTAAAAAGAAAGAAAAAAAAaGGGAAGAAAAAaTTACCGACCGCCCCTACTGCCGTTGAGAATTTTACACACGGCTGGGAGGATAGACATTCGATCCGATAACGAACAGAGCCCCTGACTTGTCGGATAAACCTCCACCGAACCCATTTCAATCAATCCGACCCATAAAATAGTACATTCTTTCGAATATTCCTCTGCTATTTCTCATCCGACCCCACCTCCTCTCTCCATTTTAAACCCTCAAAACCCACAAACTCTGCTACTTGGAACTTTTCATAATGAGCTACTCTTCTTCTTCTTCTTCTCTCTCCGACCAACTTCACCTCCTTGGTAAAGTCGAGGTTTTTAGACTCCATGGGCGTGATAAGGCTGGCAGGAATGTCCTCCTCATTGTCGGAAAATACTTTCCAGGTACTGAAATTAAATTACTTTTCTTGTTCTCCAAAACCAGAGTGTGTTAGTGTGTGTGTGTGTGTTGATTCATATCTGTTTTGGGTTTAGCTCGGTTTGTGAGCAGCCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCACTCCTTAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATCTGCCTGGAATTTCAAACCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCTAGCTTGCAAACCCGTGTGTTTTTTGCCACTGTCGGCCGCCTCATGCTTGACGCCGAGTAAGCATTCTTCCTTCCTCCCCTGTAATTGGAACTTCCCATTTCATAAAAAGGCAAAAAGGTCAGATCTTTATGGTGGGGTTGTAATTTCTTTGACTTGCAGGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAACATGTTAGAAGGAAAGAGATGGACTTACCTAAGTTTGTGTATGATCATGATGAGAAATTGGAGTTCTGTCCTGTGATGGAGTCTGATTTGGAGAATGATTATCTCAGGGTTTTCTCCCCTTCGCCGTCTTTGAATTCTGGGGTGTCTACGTATTCCATGAGGTGTTTCGCTTGATGACATGAAGAGTCAAAGATGGGGTTGGGGATACAGGGGtCTTTTTGGTTTTGTTATAGGAGTTTTTTTTTtttGGTAGTAATGGCAGAAAATATTGCCAAGTGTTGTAGACTTTCTGTAGGCAAAGGGAAAaGGTTAATGAGCTTTCCTTGTGAAGAAAGGAAGAGTTAATACTTCACAGGAAAAGCAGTGAATAGGTTTAAATGAAG

mRNA sequence

GCCACAAAAACTTATTTCTACCATTTAACGACAAAACTCTGTTTCTATATAATTACCGAACCGAACCGATCTCGCATAGACAAATTCCATCCCACTTCTTaacaaaagagaaaagggaagttaaaaagaaagaaaaaaaaagggaagaaaaaaTTACCGACCGCCCCTACTGCCGTTGAGAATTTTACACACGGCTGGGAGGATAGACATTCGATCCGATAACGAACAGAGCCCCTGACTTGTCGGATAAACCTCCACCGAACCCATTTCAATCAATCCGACCCATAAAATAGTACATTCTTTCGAATATTCCTCTGCTATTTCTCATCCGACCCCACCTCCTCTCTCCATTTTAAACCCTCAAAACCCACAAACTCTGCTACTTGGAACTTTTCATAATGAGCTACTCTTCTTCTTCTTCTTCTCTCTCCGACCAACTTCACCTCCTTGGTAAAGTCGAGGTTTTTAGACTCCATGGGCGTGATAAGGCTGGCAGGAATGTCCTCCTCATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGCCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCACTCCTTAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATCTGCCTGGAATTTCAAACCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCTAGCTTGCAAACCCGTGTGTTTTTTGCCACTGTCGGCCGCCTCATGCTTGACGCCGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAACATGTTAGAAGGAAAGAGATGGACTTACCTAAGTTTGTGTATGATCATGATGAGAAATTGGAGTTCTGTCCTGTGATGGAGTCTGATTTGGAGAATGATTATCTCAGGGTTTTCTCCCCTTCGCCGTCTTTGAATTCTGGGGTGTCTACGTATTCCATGAGGTGTTTCGCTTGATGACATGAAGAGTCAAAGATGGGGTTGGGGATACAGGGGTCTTTTTGGTTTTGTTATAGGAGTTTTTTTTTTTTGGTAGTAATGGCAGAAAATATTGCCAAGTGTTGTAGACTTTCTGTAGGCAAAGGGAAAAGGTTAATGAGCTTTCCTTGTGAAGAAAGGAAGAGTTAATACTTCACAGGAAAAGCAGTGAATAGGTTTAAATGAAG

Coding sequence (CDS)

ATGAGCTACTCTTCTTCTTCTTCTTCTCTCTCCGACCAACTTCACCTCCTTGGTAAAGTCGAGGTTTTTAGACTCCATGGGCGTGATAAGGCTGGCAGGAATGTCCTCCTCATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGCCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCACTCCTTAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATCTGCCTGGAATTTCAAACCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCTAGCTTGCAAACCCGTGTGTTTTTTGCCACTGTCGGCCGCCTCATGCTTGACGCCGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAACATGTTAGAAGGAAAGAGATGGACTTACCTAAGTTTGTGTATGATCATGATGAGAAATTGGAGTTCTGTCCTGTGATGGAGTCTGATTTGGAGAATGATTATCTCAGGGTTTTCTCCCCTTCGCCGTCTTTGAATTCTGGGGTGTCTACGTATTCCATGAGGTGTTTCGCTTGA

Protein sequence

MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLENDYLRVFSPSPSLNSGVSTYSMRCFA*

Homology

[Close]

BLAST of Cucsa.394110 vs. Swiss-Prot
Match: GDAP2_DROME (Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-13
Identity = 40/140 (28.57%), Postives = 77/140 (55.00%), Query Frame = 1


Query: 27  GRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPFTVVYIHTDVHWTENLP 86
           G D+ GR V++  GK+FPA+ +  +   +YL   + P++K G + + Y HT +  T N P
Sbjct: 388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVK-GDYVISYFHT-LTSTNNYP 447

Query: 87  GISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFATVGRLMLDAELYNKVKYVKRVEF 146
            +  L+ +Y  +P   K N++A Y +HP+  T++        M  A +  KV  +  VE 
Sbjct: 448 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPA-IKAKVHSLPGVEH 507

Query: 147 LWEHVRRKEMDLPKFVYDHD 167
           L+  + + ++++P ++ ++D
Sbjct: 508 LYSAITKDQLEIPAYITEYD 524

[Close]

BLAST of Cucsa.394110 vs. Swiss-Prot
Match: GDAP2_DROPS (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-13
Identity = 40/140 (28.57%), Postives = 77/140 (55.00%), Query Frame = 1


Query: 27  GRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPFTVVYIHTDVHWTENLP 86
           G D+ GR V++  GK+FPA+ +  +   +YL   + P++K G + + Y HT +  T N P
Sbjct: 390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVK-GDYVISYFHT-LTSTNNYP 449

Query: 87  GISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFATVGRLMLDAELYNKVKYVKRVEF 146
            +  L+ +Y  +P   K N++A Y +HP+  T++        M  A +  KV  +  VE 
Sbjct: 450 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPA-IKAKVHSLPGVEH 509

Query: 147 LWEHVRRKEMDLPKFVYDHD 167
           L+  + + ++++P ++ ++D
Sbjct: 510 LYSAITKDQLEIPAYITEYD 526

[Close]

BLAST of Cucsa.394110 vs. Swiss-Prot
Match: GDAP2_RAT (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 48/187 (25.67%), Postives = 88/187 (47.06%), Query Frame = 1


Query: 11  SDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPF 70
           S+ L  +  ++     G D  GR V+++VG+  P   +      +Y    +   +    +
Sbjct: 328 SEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEY 387

Query: 71  TVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV---FFATVGR 130
            +VY HT      +L     LK +Y+ + I  K N++AVYF+HP+ +++V   FF T   
Sbjct: 388 VLVYFHTLTSEYNHLDS-DFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFS- 447

Query: 131 LMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLEN-DYLRV 190
               + L +K+ +V  ++ L+  +  +++D P FV ++D +           EN  Y   
Sbjct: 448 ---VSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYDAR-----------ENGPYFAS 497

Query: 191 FSPSPSL 194
           + PSP L
Sbjct: 508 YPPSPDL 497

[Close]

BLAST of Cucsa.394110 vs. Swiss-Prot
Match: GDAP2_MOUSE (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-10
Identity = 48/187 (25.67%), Postives = 88/187 (47.06%), Query Frame = 1


Query: 11  SDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPF 70
           S+ L  +  ++     G D  GR V+++VG+  P   +      +Y    +   +    +
Sbjct: 329 SEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEY 388

Query: 71  TVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV---FFATVGR 130
            +VY HT      +L     LK +Y+ + I  K N++AVYF+HP+ +++V   FF T   
Sbjct: 389 VLVYFHTLTSDYNHLDS-DFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFS- 448

Query: 131 LMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLEN-DYLRV 190
               + L +K+ +V  ++ L+  +  +++D P FV ++D +           EN  Y   
Sbjct: 449 ---VSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYDAR-----------ENGPYFAS 498

Query: 191 FSPSPSL 194
           + PSP L
Sbjct: 509 YPPSPDL 498

[Close]

BLAST of Cucsa.394110 vs. Swiss-Prot
Match: GDAP2_HUMAN (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-10
Identity = 47/187 (25.13%), Postives = 87/187 (46.52%), Query Frame = 1


Query: 11  SDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPF 70
           S+ L  +  ++     G D  GR V+++VG+  P   +      +Y    +   +    +
Sbjct: 328 SEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEY 387

Query: 71  TVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV---FFATVGR 130
            +VY HT      +L     LK +Y+ + +  K N++AVYF+HP+ +++V   FF T   
Sbjct: 388 VLVYFHTLTSEYNHLDS-DFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFS- 447

Query: 131 LMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLEN-DYLRV 190
               + L +K+ +V  +  L+  +  +++D P FV ++D +           EN  Y   
Sbjct: 448 ---VSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDAR-----------ENGPYYTS 497

Query: 191 FSPSPSL 194
           + PSP L
Sbjct: 508 YPPSPDL 497

[Close]

BLAST of Cucsa.394110 vs. TrEMBL
Match: A0A0A0LML6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348170 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 7.1e-114
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1


Query: 1   MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK 60
           MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK
Sbjct: 1   MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK 60

Query: 61  IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV 120
           IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV
Sbjct: 61  IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV 120

Query: 121 FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE 180
           FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE
Sbjct: 121 FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE 180

Query: 181 NDYLRVFSPSPSLNSGVSTYSMRCFA 207
           NDYLRVFSPSPSLNSGVSTYSMRCFA
Sbjct: 181 NDYLRVFSPSPSLNSGVSTYSMRCFA 206

[Close]

BLAST of Cucsa.394110 vs. TrEMBL
Match: A0A0D2Q4U4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G120400 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 119/203 (58.62%), Postives = 158/203 (77.83%), Query Frame = 1


Query: 4   SSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFP 63
           SS + S S Q HLL K++VF++ GRDK GRNVLLI+GKYFPAR VSS+ +  YL++ I+P
Sbjct: 6   SSFTLSQSQQQHLLEKLDVFKVKGRDKRGRNVLLIIGKYFPARMVSSEILKKYLEETIYP 65

Query: 64  LLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFA 123
            L   PF+VVY+HTDV  +EN PGIS L+++Y+AIP+ +KNN+E VYFLHP LQ R+F A
Sbjct: 66  KLGANPFSVVYVHTDVQKSENFPGISVLRSVYDAIPMNLKNNLEVVYFLHPGLQARLFLA 125

Query: 124 TVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLENDY 183
           T GRL  D  LY+K+KYV R+EFLW+HVRR EM +P FV+DHDE+LE+ P+M+  LE+D+
Sbjct: 126 TFGRLFFDGGLYSKLKYVSRLEFLWDHVRRLEMKIPDFVHDHDEELEYHPMMDYGLESDH 185

Query: 184 LRVFSPSPSLNSGVSTYSMRCFA 207
            RV++  PS++  +S YSMRC A
Sbjct: 186 PRVYTEPPSMDP-ISMYSMRCIA 207

[Close]

BLAST of Cucsa.394110 vs. TrEMBL
Match: A0A067KYD2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08150 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 120/208 (57.69%), Postives = 163/208 (78.37%), Query Frame = 1


Query: 1   MSYSSSSSSLS--DQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLK 60
           MS SS ++ LS  DQ HL+ K+E+F++ GRDK GR VL ++GK FPAR VS++A+N YL 
Sbjct: 1   MSSSSPATLLSPSDQRHLIEKLEIFKIQGRDKRGRKVLRVIGKLFPARLVSNEALNNYLV 60

Query: 61  DKIFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQT 120
           +KIFP L+  PF+VVY+HTDV  +EN PGIS L++IYEAIPI +KNN++AVYF+HP LQ+
Sbjct: 61  EKIFPKLEGEPFSVVYVHTDVQRSENFPGISALRSIYEAIPINVKNNLQAVYFVHPGLQS 120

Query: 121 RVFFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESD 180
           R+F AT GRL+    LY K+K++ R+EFLW+HVRR E+++P F YDHDE+LE+ P M+  
Sbjct: 121 RLFLATFGRLLFSGGLYWKLKFLNRLEFLWDHVRRNEIEIPDFAYDHDEELEYRPTMDYG 180

Query: 181 LENDYLRVFSPSPSLNSGVSTYSMRCFA 207
           LE+D+ RV+   PS++S VS+YSMRC A
Sbjct: 181 LESDHPRVYY-GPSMDSPVSSYSMRCIA 207

[Close]

BLAST of Cucsa.394110 vs. TrEMBL
Match: A0A0B0P842_GOSAR (Protein GDAP2 OS=Gossypium arboreum GN=F383_27057 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.7e-63
Identity = 121/208 (58.17%), Postives = 160/208 (76.92%), Query Frame = 1


Query: 1   MSYSSSSSSLSD--QLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLK 60
           MS  SSS +LS   Q HLL K++VF + GRDK GRNVLLI+GKYFPAR VSS+ +  YL+
Sbjct: 1   MSNISSSFTLSQCQQHHLLEKLDVFNVRGRDKRGRNVLLIIGKYFPARMVSSEVLKKYLE 60

Query: 61  DKIFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQT 120
           + I+P L   PF+VVY+HTDV  +EN PGIS L+++Y+AIP+ +KNN+E VYFLHP LQ 
Sbjct: 61  ETIYPKLGAKPFSVVYVHTDVQKSENFPGISVLRSVYDAIPMNLKNNLEVVYFLHPGLQA 120

Query: 121 RVFFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESD 180
           R+F AT GRL  D  LY+K+KYV R++FLW+HVRR EM +P FV+DHDE+LE+ P+M+  
Sbjct: 121 RLFLATFGRLFFDGGLYSKLKYVSRLDFLWDHVRRLEMKIPDFVHDHDEELEYHPMMDYG 180

Query: 181 LENDYLRVFSPSPSLNSGVSTYSMRCFA 207
           LE+D+ RV++  PS++  +S YSMRC A
Sbjct: 181 LESDHPRVYTEPPSMDP-ISMYSMRCIA 207

[Close]

BLAST of Cucsa.394110 vs. TrEMBL
Match: B9R8H4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1599820 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.2e-62
Identity = 116/206 (56.31%), Postives = 162/206 (78.64%), Query Frame = 1


Query: 1   MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK 60
           M+ S+   S SDQ +L+ K+EVF++ GRDK GR VL IVGK FPAR VSS+A++ YL+DK
Sbjct: 1   MTASTIILSQSDQENLIDKLEVFKIQGRDKRGRKVLRIVGKLFPARLVSSEALHKYLEDK 60

Query: 61  IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV 120
           I+P L+ GPF+VVY+HT+V  +EN PGIS L++IY+AIPI +KNN+EAVYF+HP++Q R+
Sbjct: 61  IYPKLEGGPFSVVYLHTNVQRSENFPGISALRSIYDAIPINVKNNLEAVYFVHPAIQDRL 120

Query: 121 FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE 180
           FFAT GRL+    LY K++YV R+ FLW+HVRR E ++P+F YDH+E+LE+ P+ +  LE
Sbjct: 121 FFATFGRLLFSGGLYGKLRYVSRLGFLWDHVRRNEFEIPQFAYDHEEELEYRPITDYGLE 180

Query: 181 NDYLRVFSPSPSLNSGVSTYSMRCFA 207
           +D+ RV+  + S+++ VS YSMRC A
Sbjct: 181 SDHPRVYCGN-SVDNPVSMYSMRCIA 205

[Close]

BLAST of Cucsa.394110 vs. TAIR10
Match: AT4G35750.1 (AT4G35750.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein)

HSP 1 Score: 231.5 bits (589), Expect = 4.7e-61
Identity = 104/202 (51.49%), Postives = 153/202 (75.74%), Query Frame = 1


Query: 5   SSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPL 64
           SS  S  +Q  L+ K+E+F++HGRDK GR +L I+GK+FPARF+S   +  YL++KIFP 
Sbjct: 2   SSQISEIEQEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPR 61

Query: 65  LKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFAT 124
           L   PF V+Y+HT V  +EN PGIS L+AIY+AIP+ +++N++ VYFLHP LQ+R+F AT
Sbjct: 62  LGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFLAT 121

Query: 125 VGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLENDYL 184
            GR +    LY K++Y+ RV++LWEHVRR E+++P+FVYDHD+ LE+ P+M+   E+D+ 
Sbjct: 122 CGRFLFSGGLYGKLRYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESDHA 181

Query: 185 RVFSPSPSLNSGVSTYSMRCFA 207
           RVF+   +++S VS++SMRC +
Sbjct: 182 RVFA-GAAVDSSVSSFSMRCIS 202

[Close]

BLAST of Cucsa.394110 vs. TAIR10
Match: AT3G10210.1 (AT3G10210.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein)

HSP 1 Score: 155.2 bits (391), Expect = 4.3e-38
Identity = 77/181 (42.54%), Postives = 118/181 (65.19%), Query Frame = 1


Query: 17  LGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPFTVVYIH 76
           L  ++ F L G D++G  +  IVGKYFPAR VS++ +  Y+  KI     +GP  +VY+H
Sbjct: 49  LDLLQFFTLQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMH 108

Query: 77  TDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFATVGRLMLDAELYN 136
           + V   +N PGI+ L+ IYE +P  IK+ ++ VYF+HP L++R+  AT+GRL+L   LY 
Sbjct: 109 STVQKDDNSPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSGGLYW 168

Query: 137 KVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLENDYLR---VFSPSPSL 195
           K+KYV R+++LWE +++ E+++P FV +HD  LE  P+ +  +E D  +   V S S SL
Sbjct: 169 KIKYVSRLQYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPDPFQLSEVQSSSFSL 228

[Close]

BLAST of Cucsa.394110 vs. NCBI nr
Match: gi|449450478|ref|XP_004142989.1| (PREDICTED: ganglioside-induced differentiation-associated-protein 2 [Cucumis sativus])

HSP 1 Score: 417.9 bits (1073), Expect = 1.0e-113
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1


Query: 1   MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK 60
           MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK
Sbjct: 1   MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK 60

Query: 61  IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV 120
           IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV
Sbjct: 61  IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV 120

Query: 121 FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE 180
           FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE
Sbjct: 121 FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE 180

Query: 181 NDYLRVFSPSPSLNSGVSTYSMRCFA 207
           NDYLRVFSPSPSLNSGVSTYSMRCFA
Sbjct: 181 NDYLRVFSPSPSLNSGVSTYSMRCFA 206

[Close]

BLAST of Cucsa.394110 vs. NCBI nr
Match: gi|659089058|ref|XP_008445305.1| (PREDICTED: uncharacterized protein LOC103488375 [Cucumis melo])

HSP 1 Score: 405.6 bits (1041), Expect = 5.2e-110
Identity = 199/202 (98.51%), Postives = 201/202 (99.50%), Query Frame = 1


Query: 5   SSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPL 64
           SSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPL
Sbjct: 4   SSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPL 63

Query: 65  LKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFAT 124
           LKDGPFTVVYIHTDVHWTEN PGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFAT
Sbjct: 64  LKDGPFTVVYIHTDVHWTENCPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFAT 123

Query: 125 VGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLENDYL 184
           VGRLMLDAELYNKVKYVKRVEFLWEHVRRKEM+LPKFVYDHDEKLEFCPVM+SDLENDYL
Sbjct: 124 VGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMELPKFVYDHDEKLEFCPVMDSDLENDYL 183

Query: 185 RVFSPSPSLNSGVSTYSMRCFA 207
           RVFSPSPSLNSGVSTYSMRCFA
Sbjct: 184 RVFSPSPSLNSGVSTYSMRCFA 205

[Close]

BLAST of Cucsa.394110 vs. NCBI nr
Match: gi|470110088|ref|XP_004291319.1| (PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 253.8 bits (647), Expect = 2.5e-64
Identity = 117/206 (56.80%), Postives = 159/206 (77.18%), Query Frame = 1


Query: 1   MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDK 60
           M   S+  SLSDQ+ ++ K+EVF++ GRDK GR VL I+G  FPAR VS +A+N YL++ 
Sbjct: 1   MGSLSARLSLSDQMKVIEKLEVFKIQGRDKHGRKVLRIIGNSFPARSVSKEALNEYLREN 60

Query: 61  IFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRV 120
           IFP L++ PF++VY+HTDVH +EN PGIS L++IY+AIP  +KNN+EAV+F+HP LQ R+
Sbjct: 61  IFPSLEEKPFSIVYVHTDVHRSENFPGISTLRSIYDAIPENVKNNLEAVHFVHPGLQARL 120

Query: 121 FFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLE 180
           F AT GRL+    LY KV YV R+EFLW+ VRR EM++P+FVYDHDE+LEF P+M+  +E
Sbjct: 121 FLATFGRLLFTGGLYKKVNYVTRLEFLWDQVRRNEMEIPEFVYDHDEELEFRPMMDYGIE 180

Query: 181 NDYLRVFSPSPSLNSGVSTYSMRCFA 207
           +D+ RV+   P+++S VS YSMRC A
Sbjct: 181 SDHPRVYGAPPAMDSSVSMYSMRCIA 206

[Close]

BLAST of Cucsa.394110 vs. NCBI nr
Match: gi|823132986|ref|XP_012465216.1| (PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Gossypium raimondii])

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-63
Identity = 119/203 (58.62%), Postives = 158/203 (77.83%), Query Frame = 1


Query: 4   SSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFP 63
           SS + S S Q HLL K++VF++ GRDK GRNVLLI+GKYFPAR VSS+ +  YL++ I+P
Sbjct: 6   SSFTLSQSQQQHLLEKLDVFKVKGRDKRGRNVLLIIGKYFPARMVSSEILKKYLEETIYP 65

Query: 64  LLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFA 123
            L   PF+VVY+HTDV  +EN PGIS L+++Y+AIP+ +KNN+E VYFLHP LQ R+F A
Sbjct: 66  KLGANPFSVVYVHTDVQKSENFPGISVLRSVYDAIPMNLKNNLEVVYFLHPGLQARLFLA 125

Query: 124 TVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLENDY 183
           T GRL  D  LY+K+KYV R+EFLW+HVRR EM +P FV+DHDE+LE+ P+M+  LE+D+
Sbjct: 126 TFGRLFFDGGLYSKLKYVSRLEFLWDHVRRLEMKIPDFVHDHDEELEYHPMMDYGLESDH 185

Query: 184 LRVFSPSPSLNSGVSTYSMRCFA 207
            RV++  PS++  +S YSMRC A
Sbjct: 186 PRVYTEPPSMDP-ISMYSMRCIA 207

[Close]

BLAST of Cucsa.394110 vs. NCBI nr
Match: gi|802607266|ref|XP_012073707.1| (PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas])

HSP 1 Score: 250.4 bits (638), Expect = 2.8e-63
Identity = 120/208 (57.69%), Postives = 163/208 (78.37%), Query Frame = 1


Query: 1   MSYSSSSSSLS--DQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLK 60
           MS SS ++ LS  DQ HL+ K+E+F++ GRDK GR VL ++GK FPAR VS++A+N YL 
Sbjct: 1   MSSSSPATLLSPSDQRHLIEKLEIFKIQGRDKRGRKVLRVIGKLFPARLVSNEALNNYLV 60

Query: 61  DKIFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQT 120
           +KIFP L+  PF+VVY+HTDV  +EN PGIS L++IYEAIPI +KNN++AVYF+HP LQ+
Sbjct: 61  EKIFPKLEGEPFSVVYVHTDVQRSENFPGISALRSIYEAIPINVKNNLQAVYFVHPGLQS 120

Query: 121 RVFFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESD 180
           R+F AT GRL+    LY K+K++ R+EFLW+HVRR E+++P F YDHDE+LE+ P M+  
Sbjct: 121 RLFLATFGRLLFSGGLYWKLKFLNRLEFLWDHVRRNEIEIPDFAYDHDEELEYRPTMDYG 180

Query: 181 LENDYLRVFSPSPSLNSGVSTYSMRCFA 207
           LE+D+ RV+   PS++S VS+YSMRC A
Sbjct: 181 LESDHPRVYY-GPSMDSPVSSYSMRCIA 207

The following BLAST results are available for this feature:

BLAST of Cucsa.394110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GDAP2_DROME	7.7e-13	28.57	Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1	[more]
GDAP2_DROPS	7.7e-13	28.57	Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 ...	[more]
GDAP2_RAT	2.1e-10	25.67	Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN...	[more]
GDAP2_MOUSE	2.7e-10	25.67	Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap...	[more]
GDAP2_HUMAN	6.1e-10	25.13	Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP...	[more]

BLAST of Cucsa.394110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LML6_CUCSA	7.1e-114	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348170 PE=4 SV=1	[more]
A0A0D2Q4U4_GOSRA	1.1e-63	58.62	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G120400 PE=4 SV=1	[more]
A0A067KYD2_JATCU	1.9e-63	57.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08150 PE=4 SV=1	[more]
A0A0B0P842_GOSAR	5.7e-63	58.17	Protein GDAP2 OS=Gossypium arboreum GN=F383_27057 PE=4 SV=1	[more]
B9R8H4_RICCO	8.2e-62	56.31	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1599820 PE=4 SV=1	[more]

BLAST of Cucsa.394110 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35750.1	4.7e-61	51.49	SEC14 cytosolic factor family protein / phosphoglyceride transfer fa...	[more]
AT3G10210.1	4.3e-38	42.54	SEC14 cytosolic factor family protein / phosphoglyceride transfer fa...	[more]

BLAST of Cucsa.394110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450478\|ref\|XP_004142989.1\|	1.0e-113	100.00	PREDICTED: ganglioside-induced differentiation-associated-protein 2 [Cucumis sat...	[more]
gi\|659089058\|ref\|XP_008445305.1\|	5.2e-110	98.51	PREDICTED: uncharacterized protein LOC103488375 [Cucumis melo]	[more]
gi\|470110088\|ref\|XP_004291319.1\|	2.5e-64	56.80	PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Fragar...	[more]
gi\|823132986\|ref\|XP_012465216.1\|	1.6e-63	58.62	PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Gossyp...	[more]
gi\|802607266\|ref\|XP_012073707.1\|	2.8e-63	57.69	PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatrop...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001251	CRAL-TRIO_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.394110.1	Cucsa.394110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001251	CRAL-TRIO lipid binding domain	PFAM	PF13716	CRAL_TRIO_2	coord: 32..167 score: 9.0
IPR001251	CRAL-TRIO lipid binding domain	SMART	SM00516	sec14_4	coord: 16..165 score: 0.
IPR001251	CRAL-TRIO lipid binding domain	unknown	SSF52087	CRAL/TRIO domain	coord: 21..154 score: 6.2
None	No IPR available	PANTHER	PTHR11106	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	coord: 9..204 score: 2.5
None	No IPR available	PANTHER	PTHR11106:SF58	SUBFAMILY NOT NAMED	coord: 9..204 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.394110	Cla022388	Watermelon (97103) v1	cgywmB707
Cucsa.394110	Csa2G348170	Cucumber (Chinese Long) v2	cgycuB549
Cucsa.394110	ClCG08G013950	Watermelon (Charleston Gray)	cgywcgB675
Cucsa.394110	CSPI02G16930	Wild cucumber (PI 183967)	cgycpiB578
Cucsa.394110	CmaCh05G003300	Cucurbita maxima (Rimu)	cgycmaB1095
Cucsa.394110	CmoCh05G003330	Cucurbita moschata (Rifu)	cgycmoB1094
Cucsa.394110	Lsi08G012820	Bottle gourd (USVL1VR-Ls)	cgylsiB638
Cucsa.394110	Cp4.1LG11g02800	Cucurbita pepo (Zucchini)	cgycpeB1040
Cucsa.394110	Cla97C08G157460	Watermelon (97103) v2	cgywmbB677
Cucsa.394110	Bhi04G000075	Wax gourd	cgywgoB785
Cucsa.394110	Carg09382	Silver-seed gourd	carcgyB0177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.394110	Melon (DHL92) v3.6.1	cgymedB640
Cucsa.394110	Silver-seed gourd	carcgyB1101
Cucsa.394110	Cucumber (Chinese Long) v3	cgycucB596
Cucsa.394110	Wax gourd	cgywgoB783
Cucsa.394110	Cucurbita maxima (Rimu)	cgycmaB1089
Cucsa.394110	Cucurbita moschata (Rifu)	cgycmoB1087
Cucsa.394110	Melon (DHL92) v3.5.1	cgymeB645
Cucsa.394110	Cucurbita pepo (Zucchini)	cgycpeB1047