Cucsa.394110.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCACAAAAACTTATTTCTACCATTTAACGACAAAACTCTGTTTCTATATAATTACCGAACCGAACCGATCTCGCATAGACAAATTCCATCCCACTTCTTAACAAAAGAGAAAAGGGAAGTTAAAAAGAAAGAAAAAAAAaGGGAAGAAAAAaTTACCGACCGCCCCTACTGCCGTTGAGAATTTTACACACGGCTGGGAGGATAGACATTCGATCCGATAACGAACAGAGCCCCTGACTTGTCGGATAAACCTCCACCGAACCCATTTCAATCAATCCGACCCATAAAATAGTACATTCTTTCGAATATTCCTCTGCTATTTCTCATCCGACCCCACCTCCTCTCTCCATTTTAAACCCTCAAAACCCACAAACTCTGCTACTTGGAACTTTTCATAATGAGCTACTCTTCTTCTTCTTCTTCTCTCTCCGACCAACTTCACCTCCTTGGTAAAGTCGAGGTTTTTAGACTCCATGGGCGTGATAAGGCTGGCAGGAATGTCCTCCTCATTGTCGGAAAATACTTTCCAGGTACTGAAATTAAATTACTTTTCTTGTTCTCCAAAACCAGAGTGTGTTAGTGTGTGTGTGTGTGTTGATTCATATCTGTTTTGGGTTTAGCTCGGTTTGTGAGCAGCCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCACTCCTTAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATCTGCCTGGAATTTCAAACCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCTAGCTTGCAAACCCGTGTGTTTTTTGCCACTGTCGGCCGCCTCATGCTTGACGCCGAGTAAGCATTCTTCCTTCCTCCCCTGTAATTGGAACTTCCCATTTCATAAAAAGGCAAAAAGGTCAGATCTTTATGGTGGGGTTGTAATTTCTTTGACTTGCAGGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAACATGTTAGAAGGAAAGAGATGGACTTACCTAAGTTTGTGTATGATCATGATGAGAAATTGGAGTTCTGTCCTGTGATGGAGTCTGATTTGGAGAATGATTATCTCAGGGTTTTCTCCCCTTCGCCGTCTTTGAATTCTGGGGTGTCTACGTATTCCATGAGGTGTTTCGCTTGATGACATGAAGAGTCAAAGATGGGGTTGGGGATACAGGGGtCTTTTTGGTTTTGTTATAGGAGTTTTTTTTTtttGGTAGTAATGGCAGAAAATATTGCCAAGTGTTGTAGACTTTCTGTAGGCAAAGGGAAAaGGTTAATGAGCTTTCCTTGTGAAGAAAGGAAGAGTTAATACTTCACAGGAAAAGCAGTGAATAGGTTTAAATGAAG GCCACAAAAACTTATTTCTACCATTTAACGACAAAACTCTGTTTCTATATAATTACCGAACCGAACCGATCTCGCATAGACAAATTCCATCCCACTTCTTaacaaaagagaaaagggaagttaaaaagaaagaaaaaaaaagggaagaaaaaaTTACCGACCGCCCCTACTGCCGTTGAGAATTTTACACACGGCTGGGAGGATAGACATTCGATCCGATAACGAACAGAGCCCCTGACTTGTCGGATAAACCTCCACCGAACCCATTTCAATCAATCCGACCCATAAAATAGTACATTCTTTCGAATATTCCTCTGCTATTTCTCATCCGACCCCACCTCCTCTCTCCATTTTAAACCCTCAAAACCCACAAACTCTGCTACTTGGAACTTTTCATAATGAGCTACTCTTCTTCTTCTTCTTCTCTCTCCGACCAACTTCACCTCCTTGGTAAAGTCGAGGTTTTTAGACTCCATGGGCGTGATAAGGCTGGCAGGAATGTCCTCCTCATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGCCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCACTCCTTAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATCTGCCTGGAATTTCAAACCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCTAGCTTGCAAACCCGTGTGTTTTTTGCCACTGTCGGCCGCCTCATGCTTGACGCCGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAACATGTTAGAAGGAAAGAGATGGACTTACCTAAGTTTGTGTATGATCATGATGAGAAATTGGAGTTCTGTCCTGTGATGGAGTCTGATTTGGAGAATGATTATCTCAGGGTTTTCTCCCCTTCGCCGTCTTTGAATTCTGGGGTGTCTACGTATTCCATGAGGTGTTTCGCTTGATGACATGAAGAGTCAAAGATGGGGTTGGGGATACAGGGGTCTTTTTGGTTTTGTTATAGGAGTTTTTTTTTTTTGGTAGTAATGGCAGAAAATATTGCCAAGTGTTGTAGACTTTCTGTAGGCAAAGGGAAAAGGTTAATGAGCTTTCCTTGTGAAGAAAGGAAGAGTTAATACTTCACAGGAAAAGCAGTGAATAGGTTTAAATGAAG ATGAGCTACTCTTCTTCTTCTTCTTCTCTCTCCGACCAACTTCACCTCCTTGGTAAAGTCGAGGTTTTTAGACTCCATGGGCGTGATAAGGCTGGCAGGAATGTCCTCCTCATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGCCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCACTCCTTAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATCTGCCTGGAATTTCAAACCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCTAGCTTGCAAACCCGTGTGTTTTTTGCCACTGTCGGCCGCCTCATGCTTGACGCCGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAACATGTTAGAAGGAAAGAGATGGACTTACCTAAGTTTGTGTATGATCATGATGAGAAATTGGAGTTCTGTCCTGTGATGGAGTCTGATTTGGAGAATGATTATCTCAGGGTTTTCTCCCCTTCGCCGTCTTTGAATTCTGGGGTGTCTACGTATTCCATGAGGTGTTTCGCTTGA MSYSSSSSSLSDQLHLLGKVEVFRLHGRDKAGRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPLLKDGPFTVVYIHTDVHWTENLPGISNLKAIYEAIPITIKNNIEAVYFLHPSLQTRVFFATVGRLMLDAELYNKVKYVKRVEFLWEHVRRKEMDLPKFVYDHDEKLEFCPVMESDLENDYLRVFSPSPSLNSGVSTYSMRCFA*
BLAST of Cucsa.394110.1 vs. Swiss-Prot
Match: GDAP2_DROME (Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 7.7e-13 Identity = 40/140 (28.57%), Postives = 77/140 (55.00%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. Swiss-Prot
Match: GDAP2_DROPS (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 7.7e-13 Identity = 40/140 (28.57%), Postives = 77/140 (55.00%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. Swiss-Prot
Match: GDAP2_RAT (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10 Identity = 48/187 (25.67%), Postives = 88/187 (47.06%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. Swiss-Prot
Match: GDAP2_MOUSE (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.7e-10 Identity = 48/187 (25.67%), Postives = 88/187 (47.06%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. Swiss-Prot
Match: GDAP2_HUMAN (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 6.1e-10 Identity = 47/187 (25.13%), Postives = 87/187 (46.52%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. TrEMBL
Match: A0A0A0LML6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348170 PE=4 SV=1) HSP 1 Score: 417.9 bits (1073), Expect = 7.1e-114 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. TrEMBL
Match: A0A0D2Q4U4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G120400 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63 Identity = 119/203 (58.62%), Postives = 158/203 (77.83%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. TrEMBL
Match: A0A067KYD2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08150 PE=4 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63 Identity = 120/208 (57.69%), Postives = 163/208 (78.37%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. TrEMBL
Match: A0A0B0P842_GOSAR (Protein GDAP2 OS=Gossypium arboreum GN=F383_27057 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 5.7e-63 Identity = 121/208 (58.17%), Postives = 160/208 (76.92%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. TrEMBL
Match: B9R8H4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1599820 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 8.2e-62 Identity = 116/206 (56.31%), Postives = 162/206 (78.64%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. TAIR10
Match: AT4G35750.1 (AT4G35750.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) HSP 1 Score: 231.5 bits (589), Expect = 4.7e-61 Identity = 104/202 (51.49%), Postives = 153/202 (75.74%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. TAIR10
Match: AT3G10210.1 (AT3G10210.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein) HSP 1 Score: 155.2 bits (391), Expect = 4.3e-38 Identity = 77/181 (42.54%), Postives = 118/181 (65.19%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. NCBI nr
Match: gi|449450478|ref|XP_004142989.1| (PREDICTED: ganglioside-induced differentiation-associated-protein 2 [Cucumis sativus]) HSP 1 Score: 417.9 bits (1073), Expect = 1.0e-113 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. NCBI nr
Match: gi|659089058|ref|XP_008445305.1| (PREDICTED: uncharacterized protein LOC103488375 [Cucumis melo]) HSP 1 Score: 405.6 bits (1041), Expect = 5.2e-110 Identity = 199/202 (98.51%), Postives = 201/202 (99.50%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. NCBI nr
Match: gi|470110088|ref|XP_004291319.1| (PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 253.8 bits (647), Expect = 2.5e-64 Identity = 117/206 (56.80%), Postives = 159/206 (77.18%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. NCBI nr
Match: gi|823132986|ref|XP_012465216.1| (PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Gossypium raimondii]) HSP 1 Score: 251.1 bits (640), Expect = 1.6e-63 Identity = 119/203 (58.62%), Postives = 158/203 (77.83%), Query Frame = 1
BLAST of Cucsa.394110.1 vs. NCBI nr
Match: gi|802607266|ref|XP_012073707.1| (PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]) HSP 1 Score: 250.4 bits (638), Expect = 2.8e-63 Identity = 120/208 (57.69%), Postives = 163/208 (78.37%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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