Cucsa.365880 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.365880
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	40s ribosomal protein SA
Location	scaffold03611 : 3772110 .. 3774953 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGGAAGAAGGAAGAAGGAATTTATTAACTTAATTTATAGTCGAGGGCATTATAGTAATTAGCAATCTAGGGTTTTTATGCATAAATATTAGTCTTCCTCTTAACCTTCTTCAGTTGCAGCCGCCGAAGAGCTCCAAATCCTCTTTTCATTCACTTCATCGATTCCCAGATTCCGCCATGGCGACCGGAGCTGCACCGCCTCGTCAACTCTCACAGAAGGAGGCCGACATTCAGATGATGTTGGCTGCCGAAGTTCATCTTGGCACAAAAAACTGCGATTTTCAAATGGAACGATATGTTTTTAAGCGCCGAAATGATGGTATGTTTCCTTTAGATCTTCCTTGGTTTGTTGCTCCAAGTTCTGTGTTCTGTTTTTtCCTTTTTATCGGCGATTTCGCTTTGACTGATATTTAAAGTTCTAATGAGCGGGTTGTTATTGTTCTTAAGTTTCTTTTTCAAGAATTTCTCGACTTTATTGTGATTGGAATCATATATATTTTAGTTCGGAAGTTCCAGTCTTTGGCTATTCTTCTGTTTATCTCTTTAAAATTTTCTTCATTTTCTTTGGATTTTTTCTCCAAATTTTCAGAACAGCATTAAGTACTTTGATGCTGTTTTGAGTTTTGTCGCAGAATGATGATTAACACGTTTCGAATGCTTTGCTTAAAGGGAGGGCTCAATGGGGTTTGTCTATATAATGTGTTGATGTTAGCTTATTTGAATTGTTGAGTTATGGTTGTGTGTGGTTTTTTTATTtATAAAAAGTATTACTTTGTCATTAGGAATCTACATCATTAACCTTGGGAAAACATGGGAGAAACTTCAGCTGGCTGCAAGAGTTATTGTGGGTATTGAGAATCCTCAAGATATCATTGTTCAGTCTGCTCGACCCTATGGTCAGAGGGCTGTTTTGAAGTTCGCTCAGCACACTGGTGCTCATGCTATTGCTGGGAGGCACACTCCTGGAACATTCACCAACCAGCTTCAGACATCATTCAACGAGCCACGCCTGCTTATACTTACTGATCCTAGAACTGATCATCAGGTGTTTAAATTTAGAAATCAAGAAAAGTTCATGGTTTTAAATTTAGCTCCAAGAAAAATGGTGGCTTTATATTGTCAATTATGATACCGTTCATGCCTGTTCCATTGATTTATTTGTGTTTGGATTCACTTGATGCTTTTGTTTATTGACGTAGCCTTGTTGATTCTTACTTGCAGCCAATTAAGGAAGCTGCACTTGGTAACATTCCCACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCCAACAACAAGGGAAAACATAGCATAGGATGTTTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGGACAATTCGTGCTGGCCACAAATGGGATGTGATGGTAAAAGATCTTGTTGCAATTTTCTATTGGTACTTTAGAAACAACATTTGGACTTAGTTTTCAATTAACAATTATTTGTGGGAACGGTTTTCCTTGCATAGGTGGATTTGTTTTTCTATCGTGAACCTGAGGAGGCTAAGGAGCCAGAAGAGGAAGAGGCTCTTCCACCCGCAGATTTTGGCATTGCTGACTATAGTGCTGCTCCACTTACCTCAGACCAATGGACTTCACAAATTCCCGATGCCCAATGGGGTGCTGCAGATGCAATTCCTCCTCCTGCGCCTGTTGTACCTGCTTCCGGTGCTGAATGGGCTCCAGAGCCAGGTTGAATATAAGCTTTTGTTTTtAATTCTTTATTTGAATAGAGCTGTCTGCCTTTAGTATGCTTATTCACGTAAACATGTTTTGGTCTCTTTGGAGAACTGTTTCCTCTTAGGCTGGATAAGTCATTTTGTCTGCTTTCCGTATGAAGTTTCTGATTATTCTCTACCTACCTAATACTGCCAAACAATCCCGTTCTTTGCATTACATTGTTTTTGCATCTTTAGACATCCTTTACCAGGAGTTGTAAGATGCTTCCTACATGTATTTGTACGCACTCTCTCACCATTGTTTTCCTTTGTTTCCAGTTGCTTTGGCAGCAGATGGATGGGATGCCGCAGCAGCACCTCCGCCGCCGCCAGCAGTTTCTGCTGAGGGAACGGCACCTTCCTCCGCCAGTTGGTTTTGAGAGAGAAAAAGTTTAAAGTTCCGTACCGAATTGTACTCTAATGGATTAATTATTATGAGTTTTCTTGTTTATTTAGGAATGACATCGGTCCTTTTTGGTTGGAAAATTGATTTCTTTTTTtATAGTCCAGTTTTAGATTTTAAGATTGAATTTTCCGACTTCCATTACATATCTTAAGTCCCAACAAACAATATATTAATTTTGGATGGCTAAAGGTGGCATGTTTtCTTTGAAAGTTTTGGTGAAGTGAGCGTAACAACTAGAGTCGAGTTAATAGTGGTTTAATCTTTTACGGGAATATCTGAACCTCAATATTTGATGTGTTTTGTGTTGTACTGATAATGTTAGAGATGTTCTATCAATGGGATGGTGCCGTGGCATGAACATCAGTTCACTTAAATGATATTTTTTCATAAATAATGCATAAAAGTATATTCTATTAATTTGGCTTTTTATTTTAAAATATAGAAATCACAAATATGAAAAGTTATATATATGAAAAATTATTGTAGTTTTTTTtCCAATATCTTCAAACTCACCAATTGAAGTAAATTTCAAGATATTTTCATTCGTTTGTAAATCCAATTTTGAATTTTGACTTTAATACATAATTATAATAGCAAAATTCTGTGTTCTCTATTTCAGTGGATTACTTTTTAATACATAATTGTAATATCAGATGTTTCTTATT

mRNA sequence

gaagaaggaagaaggaagaaggaaTTTATTAACTTAATTTATAGTCGAGGGCATTATAGTAATTAGCAATCTAGGGTTTTTATGCATAAATATTAGTCTTCCTCTTAACCTTCTTCAGTTGCAGCCGCCGAAGAGCTCCAAATCCTCTTTTCATTCACTTCATCGATTCCCAGATTCCGCCATGGCGACCGGAGCTGCACCGCCTCGTCAACTCTCACAGAAGGAGGCCGACATTCAGATGATGTTGGCTGCCGAAGTTCATCTTGGCACAAAAAACTGCGATTTTCAAATGGAACGATATGTTTTTAAGCGCCGAAATGATGGAATCTACATCATTAACCTTGGGAAAACATGGGAGAAACTTCAGCTGGCTGCAAGAGTTATTGTGGGTATTGAGAATCCTCAAGATATCATTGTTCAGTCTGCTCGACCCTATGGTCAGAGGGCTGTTTTGAAGTTCGCTCAGCACACTGGTGCTCATGCTATTGCTGGGAGGCACACTCCTGGAACATTCACCAACCAGCTTCAGACATCATTCAACGAGCCACGCCTGCTTATACTTACTGATCCTAGAACTGATCATCAGCCAATTAAGGAAGCTGCACTTGGTAACATTCCCACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCCAACAACAAGGGAAAACATAGCATAGGATGTTTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGGACAATTCGTGCTGGCCACAAATGGGATGTGATGGTGGATTTGTTTTTCTATCGTGAACCTGAGGAGGCTAAGGAGCCAGAAGAGGAAGAGGCTCTTCCACCCGCAGATTTTGGCATTGCTGACTATAGTGCTGCTCCACTTACCTCAGACCAATGGACTTCACAAATTCCCGATGCCCAATGGGGTGCTGCAGATGCAATTCCTCCTCCTGCGCCTGTTGTACCTGCTTCCGGTGCTGAATGGGCTCCAGAGCCAGTTGCTTTGGCAGCAGATGGATGGGATGCCGCAGCAGCACCTCCGCCGCCGCCAGCAGTTTCTGCTGAGGGAACGGCACCTTCCTCCGCCAGTTGGTTTTGAGAGAGAAAAAGTTTAAAGTTCCGTACCGAATTGTACTCTAATGGATTAATTATTATGAGTTTTCTTGTTTATTTAGGAATGACATCGGTCCTTTTTGGTTGGAAAATTGATTTCTTTTTTTATAGTCCAGTTTTAGATTTTAAGATTGAATTTTCCGACTTCCATTACATATCTTAAGTCCCAACAAACAATATATTAATTTTGGATGGCTAAAGGTGGCATGTTTTCTTTGAAAGTTTTGGTGAAGTGAGCGTAACAACTAGAGTCGAGTTAATAGTGGTTTAATCTTTTACGGGAATATCTGAACCTCAATATTTGATGTGTTTTGTGTTGTACTGATAATGTTAGAGATGTTCTATCAATGGGATGGTGCCGTGGCATGAACATCAGTTCACTTAAATGATATTTTTTCATAAATAATGCATAAAAGTATATTCTATTAATTTGGCTTTTTATTTTAAAATATAGAAATCACAAATATGAAAAGTTATATATATGAAAAATTATTGTAGTTTTTTTTCCAATATCTTCAAACTCACCAATTGAAGTAAATTTCAAGATATTTTCATTCGTTTGTAAATCCAATTTTGAATTTTGACTTTAATACATAATTATAATAGCAAAATTCTGTGTTCTCTATTTCAGTGGATTACTTTTTAATACATAATTGTAATATCAGATGTTTCTTATT

Coding sequence (CDS)

ATGGCGACCGGAGCTGCACCGCCTCGTCAACTCTCACAGAAGGAGGCCGACATTCAGATGATGTTGGCTGCCGAAGTTCATCTTGGCACAAAAAACTGCGATTTTCAAATGGAACGATATGTTTTTAAGCGCCGAAATGATGGAATCTACATCATTAACCTTGGGAAAACATGGGAGAAACTTCAGCTGGCTGCAAGAGTTATTGTGGGTATTGAGAATCCTCAAGATATCATTGTTCAGTCTGCTCGACCCTATGGTCAGAGGGCTGTTTTGAAGTTCGCTCAGCACACTGGTGCTCATGCTATTGCTGGGAGGCACACTCCTGGAACATTCACCAACCAGCTTCAGACATCATTCAACGAGCCACGCCTGCTTATACTTACTGATCCTAGAACTGATCATCAGCCAATTAAGGAAGCTGCACTTGGTAACATTCCCACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCCAACAACAAGGGAAAACATAGCATAGGATGTTTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGGACAATTCGTGCTGGCCACAAATGGGATGTGATGGTGGATTTGTTTTTCTATCGTGAACCTGAGGAGGCTAAGGAGCCAGAAGAGGAAGAGGCTCTTCCACCCGCAGATTTTGGCATTGCTGACTATAGTGCTGCTCCACTTACCTCAGACCAATGGACTTCACAAATTCCCGATGCCCAATGGGGTGCTGCAGATGCAATTCCTCCTCCTGCGCCTGTTGTACCTGCTTCCGGTGCTGAATGGGCTCCAGAGCCAGTTGCTTTGGCAGCAGATGGATGGGATGCCGCAGCAGCACCTCCGCCGCCGCCAGCAGTTTCTGCTGAGGGAACGGCACCTTCCTCCGCCAGTTGGTTTTGA

Protein sequence

MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSDQWTSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGTAPSSASWF*

Homology

[Close]

BLAST of Cucsa.365880 vs. Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 8.0e-131
Identity = 237/292 (81.16%), Postives = 250/292 (85.62%), Query Frame = 1


Query: 5   AAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLA 64
           AAPPRQLSQKEADIQMMLAA+VHLGTKNCDFQMERY+FKRRNDGIYIINLGKTWEKLQLA
Sbjct: 9   AAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLA 68

Query: 65  ARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 69  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 128

Query: 125 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 129 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 188

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD-QWT 244
           VLQMRGTIR G KWDVMVDLFFYREPEEAK+ EEEEA P  D+ I D++A  + +D QW 
Sbjct: 189 VLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEA-PAVDYAITDFNAGAIAADGQWP 248

Query: 245 SQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAV 296
             I D  W  +DA+P P P VP  G  W     A AA G D   A PPP  +
Sbjct: 249 GTI-DQSW--SDAVPQPIPAVP--GVNWGAPAEAPAAAGGDWGEAVPPPQQI 294

[Close]

BLAST of Cucsa.365880 vs. Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 1.4e-130
Identity = 242/315 (76.83%), Postives = 254/315 (80.63%), Query Frame = 1


Query: 5   AAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLA 64
           A P R LSQKE DIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKLQLA
Sbjct: 2   ATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 61

Query: 65  ARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV IENP+DIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121

Query: 125 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAP---LTSDQ 244
           VLQMR TI  GHKWDVMVDLFFYREPEE KE E +E +   D+GI DY A     L    
Sbjct: 182 VLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGD 241

Query: 245 WTSQIPDA-QWGAADAIPPPAPVVPASGAEWA-----PEPVALAADGWDAAAAPP---PP 304
           W + I DA QWGA   +P  AP+    G+ W      P  V +A DGWDAAAAPP   PP
Sbjct: 242 WGAPITDAPQWGA--DVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAVPP 301

Query: 305 PAVSAEGTAPSSASW 308
           P V  EG  P  A W
Sbjct: 302 PVV--EG-VPPPAGW 311

[Close]

BLAST of Cucsa.365880 vs. Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 2.3e-130
Identity = 241/304 (79.28%), Postives = 259/304 (85.20%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MA+GA   R+LS  EADIQMM AAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MASGA---RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L LAARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LMLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240
           LARMVLQMRG I  GHKW+VMVDLFFYREPEE K+ EEE+ LP  D+ +ADY+AAP+  +
Sbjct: 181 LARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEED-LPVGDY-VADYAAAPIGGA 240

Query: 241 DQWTSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEG 300
           DQW + IPDAQWG  D + P    VPA    W  +   +A DGWDAAAAPP P AV  + 
Sbjct: 241 DQWNA-IPDAQWG-GDVVQPANSAVPA--GTWT-DAGPIAGDGWDAAAAPPVPGAVGLDV 294

Query: 301 TAPS 304
            AP+
Sbjct: 301 PAPT 294

[Close]

BLAST of Cucsa.365880 vs. Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.6e-126
Identity = 231/291 (79.38%), Postives = 249/291 (85.57%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQL+QKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L LAAR+IV IEN QDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD 240
           LARMVLQMRGTIR G KWDVMVDLFFYREPEEAK+PEE+E   P D+ IAD++ + + SD
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAP-DYAIADFNVSAIPSD 240

Query: 241 -QWTSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPP 291
            QW + I D  W   DA+P P P VPA    WA  P A+A D W  A  PP
Sbjct: 241 GQWPAAI-DQPWN--DAVPQPIPAVPA--VNWA-APEAVAGD-WGEAVPPP 283

[Close]

BLAST of Cucsa.365880 vs. Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 437.6 bits (1124), Expect = 1.2e-121
Identity = 226/302 (74.83%), Postives = 247/302 (81.79%), Query Frame = 1


Query: 1   MAT-GAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A   QLSQKEAD++MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFG-IADYSAAPLT 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEE K  +E+EA P A++G +       + 
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-TSQIPDAQW-GAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVS 299
            DQW T+QIPDA W G   A   P    PA+ A W+    A A  GW+AAA P   PA  
Sbjct: 241 GDQWTTAQIPDAAWPGEGQA---PISAAPAA-ASWSDSAAAPADGGWEAAAPPSGAPAAG 298

[Close]

BLAST of Cucsa.365880 vs. TrEMBL
Match: A0A0A0K8X1_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_6G016990 PE=3 SV=1)

HSP 1 Score: 632.9 bits (1631), Expect = 2.1e-178
Identity = 307/308 (99.68%), Postives = 307/308 (99.68%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD 240

Query: 241 QWTSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT 300
           QWTSQIPDAQWGAADAIP PAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT
Sbjct: 241 QWTSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT 300

Query: 301 APSSASWF 309
           APSSASWF
Sbjct: 301 APSSASWF 308

[Close]

BLAST of Cucsa.365880 vs. TrEMBL
Match: A0A0A0L946_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_3G646520 PE=3 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 5.3e-150
Identity = 276/314 (87.90%), Postives = 282/314 (89.81%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATATAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKE EEEEA+ P D+GIADY  APL  S
Sbjct: 181 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 240

Query: 241 DQWTSQIPDAQWGAADAIPPP--APVV--PASGAEWAPEP-VALAADGWDAAAAPPPPPA 300
           DQW  QI DAQWGA D IP P  APVV  P S  EW  EP VA+A+DGWDAAA   PPPA
Sbjct: 241 DQWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWDAAA---PPPA 300

Query: 301 VSAEGTAPSSASWF 309
            SAEG AP +ASWF
Sbjct: 301 PSAEGGAP-AASWF 309

[Close]

BLAST of Cucsa.365880 vs. TrEMBL
Match: A0A059ASL7_EUCGR (40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 7.2e-139
Identity = 247/308 (80.19%), Postives = 262/308 (85.06%), Query Frame = 1


Query: 3   TGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 62
           T AAP RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ
Sbjct: 7   TAAAPARQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 66

Query: 63  LAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEP 122
           LAARVIV IENPQDIIVQSARPYGQRAVLKFAQ+T  HAIAGRHTPGTFTNQLQTSF+EP
Sbjct: 67  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTNTHAIAGRHTPGTFTNQLQTSFSEP 126

Query: 123 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 182
           RLLILTDPRTDHQPIKE+ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA
Sbjct: 127 RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 186

Query: 183 RMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSDQW 242
           RMVLQMRGTI  GHKWDVMVDLFFYREPEEAK+ EEEEA+   D+GI DY+A     DQW
Sbjct: 187 RMVLQMRGTITPGHKWDVMVDLFFYREPEEAKQQEEEEAIVAGDYGITDYAAGQAIPDQW 246

Query: 243 TSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGTAP 302
           TSQIPD+QW A++A  PP P +  +G  W      +AADGW+ AAAP P PA +     P
Sbjct: 247 TSQIPDSQW-ASEAAAPPVPAIQPTG--WTETAAPVAADGWEIAAAPAPAPAAAPPAVVP 306

Query: 303 SS---ASW 308
            S   A W
Sbjct: 307 PSNNDAGW 311

[Close]

BLAST of Cucsa.365880 vs. TrEMBL
Match: A0A059ARV8_EUCGR (40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 2.1e-138
Identity = 247/308 (80.19%), Postives = 260/308 (84.42%), Query Frame = 1


Query: 3   TGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 62
           T AAP RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ
Sbjct: 7   TAAAPARQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 66

Query: 63  LAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEP 122
           LAARVIV IENPQDIIVQSARPYGQRAVLKFAQ+T  HAIAGRHTPGTFTNQLQTSF+EP
Sbjct: 67  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTNTHAIAGRHTPGTFTNQLQTSFSEP 126

Query: 123 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 182
           RLLILTDPRTDHQPIKE+ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA
Sbjct: 127 RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 186

Query: 183 RMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSDQW 242
           RMVLQMRGTI  GHKWDVMVDLFFYREPEEAK+ EEEEA+   D+GI DY+A     DQW
Sbjct: 187 RMVLQMRGTITPGHKWDVMVDLFFYREPEEAKQQEEEEAIVAGDYGITDYAAGQAIPDQW 246

Query: 243 TSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGTAP 302
           TSQIPD+QW +  A PP   + P    E AP    +AADGW+ AAAP P PA +     P
Sbjct: 247 TSQIPDSQWASEAAAPPVPAIQPTGWTETAP----VAADGWEIAAAPAPAPAAAPPAVVP 306

Query: 303 SS---ASW 308
            S   A W
Sbjct: 307 PSNNDAGW 310

[Close]

BLAST of Cucsa.365880 vs. TrEMBL
Match: A0A0A0KUD9_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_4G038770 PE=3 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 1.4e-137
Identity = 250/307 (81.43%), Postives = 264/307 (85.99%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATG     QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGTEQC-QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD 240
           LARMVLQMRGT+R G+KWDVMVDLFFYREPEE KE EEEEA+ P D+GIAD+ +AP+  D
Sbjct: 181 LARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAPVAVD 240

Query: 241 QWTSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT 300
           QW   +PDAQWGA + + P A     S AEWA E V  AADGW  A    PPPA S E  
Sbjct: 241 QW---VPDAQWGAPN-VAPTAAAASVSNAEWAQESVR-AADGWGVAI---PPPAPSLEAA 298

Query: 301 APSSASW 308
           AP ++ W
Sbjct: 301 APPASDW 298

[Close]

BLAST of Cucsa.365880 vs. TAIR10
Match: AT1G72370.1 (AT1G72370.1 40s ribosomal protein SA)

HSP 1 Score: 437.6 bits (1124), Expect = 6.5e-123
Identity = 226/302 (74.83%), Postives = 247/302 (81.79%), Query Frame = 1


Query: 1   MAT-GAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A   QLSQKEAD++MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFG-IADYSAAPLT 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEE K  +E+EA P A++G +       + 
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-TSQIPDAQW-GAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVS 299
            DQW T+QIPDA W G   A   P    PA+ A W+    A A  GW+AAA P   PA  
Sbjct: 241 GDQWTTAQIPDAAWPGEGQA---PISAAPAA-ASWSDSAAAPADGGWEAAAPPSGAPAAG 298

[Close]

BLAST of Cucsa.365880 vs. TAIR10
Match: AT3G04770.1 (AT3G04770.1 40s ribosomal protein SA B)

HSP 1 Score: 360.5 bits (924), Expect = 1.0e-99
Identity = 173/199 (86.93%), Postives = 189/199 (94.97%), Query Frame = 1


Query: 5   AAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLA 64
           A   RQ+S+KEADIQMML+A+VHLGTKNC++QMERYVFKRR+DGIYIINLGKTW+KLQ+A
Sbjct: 7   ATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMA 66

Query: 65  ARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV IENP+DIIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRL
Sbjct: 67  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRL 126

Query: 125 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 127 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARM 186

Query: 185 VLQMRGTIRAGHKWDVMVD 204
           VLQMRGTI A  KWDVMV+
Sbjct: 187 VLQMRGTILAAQKWDVMVN 205

[Close]

BLAST of Cucsa.365880 vs. NCBI nr
Match: gi|449441203|ref|XP_004138372.1| (PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus])

HSP 1 Score: 632.9 bits (1631), Expect = 3.0e-178
Identity = 307/308 (99.68%), Postives = 307/308 (99.68%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD 240

Query: 241 QWTSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT 300
           QWTSQIPDAQWGAADAIP PAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT
Sbjct: 241 QWTSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT 300

Query: 301 APSSASWF 309
           APSSASWF
Sbjct: 301 APSSASWF 308

[Close]

BLAST of Cucsa.365880 vs. NCBI nr
Match: gi|659126207|ref|XP_008463065.1| (PREDICTED: 40S ribosomal protein SA-like [Cucumis melo])

HSP 1 Score: 618.6 bits (1594), Expect = 5.8e-174
Identity = 300/308 (97.40%), Postives = 303/308 (98.38%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLTSD 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL SD
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPLASD 240

Query: 241 QWTSQIPDAQWGAADAIPPPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEGT 300
           QWTSQIPDAQWGAADA+PPPA VVPASGAEWAPEPVAL ADGWD AAAPPPPPA SA+GT
Sbjct: 241 QWTSQIPDAQWGAADALPPPAAVVPASGAEWAPEPVALTADGWD-AAAPPPPPAASADGT 300

Query: 301 APSSASWF 309
           AP+SASWF
Sbjct: 301 APASASWF 307

[Close]

BLAST of Cucsa.365880 vs. NCBI nr
Match: gi|449453391|ref|XP_004144441.1| (PREDICTED: 40S ribosomal protein SA [Cucumis sativus])

HSP 1 Score: 538.5 bits (1386), Expect = 7.7e-150
Identity = 276/314 (87.90%), Postives = 282/314 (89.81%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATATAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKE EEEEA+ P D+GIADY  APL  S
Sbjct: 181 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 240

Query: 241 DQWTSQIPDAQWGAADAIPPP--APVV--PASGAEWAPEP-VALAADGWDAAAAPPPPPA 300
           DQW  QI DAQWGA D IP P  APVV  P S  EW  EP VA+A+DGWDAAA   PPPA
Sbjct: 241 DQWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWDAAA---PPPA 300

Query: 301 VSAEGTAPSSASWF 309
            SAEG AP +ASWF
Sbjct: 301 PSAEGGAP-AASWF 309

[Close]

BLAST of Cucsa.365880 vs. NCBI nr
Match: gi|659120752|ref|XP_008460336.1| (PREDICTED: 40S ribosomal protein SA-like isoform X2 [Cucumis melo])

HSP 1 Score: 538.1 bits (1385), Expect = 1.0e-149
Identity = 272/312 (87.18%), Postives = 278/312 (89.10%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 73  MATTTAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 132

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 133 LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 192

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 193 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 252

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKE EEEEA+ P D+GIADY  APL  S
Sbjct: 253 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 312

Query: 241 DQWTSQIPDAQWGAADAIPPPAPVV---PASGAEWAPEPVALAADGWDAAAAPPPPPAVS 300
           DQW  QI DAQWGA D IP P   V   P S  EW  EPVALA+DGWDAA    PPPA +
Sbjct: 313 DQWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPVALASDGWDAAV---PPPAPA 372

Query: 301 AEGTAPSSASWF 309
           AEG AP +ASWF
Sbjct: 373 AEGGAP-AASWF 379

[Close]

BLAST of Cucsa.365880 vs. NCBI nr
Match: gi|659120750|ref|XP_008460335.1| (PREDICTED: 40S ribosomal protein SA-like isoform X1 [Cucumis melo])

HSP 1 Score: 533.5 bits (1373), Expect = 2.5e-148
Identity = 272/313 (86.90%), Postives = 278/313 (88.82%), Query Frame = 1


Query: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 73  MATTTAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 132

Query: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 133 LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 192

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 193 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 252

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKE EEEEA+ P D+GIADY  APL  S
Sbjct: 253 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 312

Query: 241 DQWTSQIPDAQWGAADAIPPPAPVV---PASGAEWAPEP-VALAADGWDAAAAPPPPPAV 300
           DQW  QI DAQWGA D IP P   V   P S  EW  EP VALA+DGWDAA    PPPA 
Sbjct: 313 DQWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPAVALASDGWDAAV---PPPAP 372

Query: 301 SAEGTAPSSASWF 309
           +AEG AP +ASWF
Sbjct: 373 AAEGGAP-AASWF 380

The following BLAST results are available for this feature:

BLAST of Cucsa.365880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RSSA_SOYBN	8.0e-131	81.16	40S ribosomal protein SA OS=Glycine max PE=2 SV=1	[more]
RSSA_VITVI	1.4e-130	76.83	40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1	[more]
RSSA_DAUCA	2.3e-130	79.28	40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1	[more]
RSSA_CICAR	1.6e-126	79.38	40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1	[more]
RSSA1_ARATH	1.2e-121	74.83	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3	[more]

BLAST of Cucsa.365880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8X1_CUCSA	2.1e-178	99.68	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_6G016990 PE=3 SV=1	[more]
A0A0A0L946_CUCSA	5.3e-150	87.90	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_3G646520 PE=3 SV=1	[more]
A0A059ASL7_EUCGR	7.2e-139	80.19	40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1	[more]
A0A059ARV8_EUCGR	2.1e-138	80.19	40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1	[more]
A0A0A0KUD9_CUCSA	1.4e-137	81.43	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_4G038770 PE=3 SV=1	[more]

BLAST of Cucsa.365880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72370.1	6.5e-123	74.83	40s ribosomal protein SA	[more]
AT3G04770.1	1.0e-99	86.93	40s ribosomal protein SA B	[more]

BLAST of Cucsa.365880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441203\|ref\|XP_004138372.1\|	3.0e-178	99.68	PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus]	[more]
gi\|659126207\|ref\|XP_008463065.1\|	5.8e-174	97.40	PREDICTED: 40S ribosomal protein SA-like [Cucumis melo]	[more]
gi\|449453391\|ref\|XP_004144441.1\|	7.7e-150	87.90	PREDICTED: 40S ribosomal protein SA [Cucumis sativus]	[more]
gi\|659120752\|ref\|XP_008460336.1\|	1.0e-149	87.18	PREDICTED: 40S ribosomal protein SA-like isoform X2 [Cucumis melo]	[more]
gi\|659120750\|ref\|XP_008460335.1\|	2.5e-148	86.90	PREDICTED: 40S ribosomal protein SA-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001865	Ribosomal_S2
IPR005707	Ribosomal_S2_euk/arc
IPR018130	Ribosomal_S2_CS
IPR023591	Ribosomal_S2_flav_dom_sf
IPR027498	Ribosomal_S2_euk
IPR001865	Ribosomal_S2
IPR005707	Ribosomal_S2_euk/arc
IPR018130	Ribosomal_S2_CS
IPR023591	Ribosomal_S2_flav_dom_sf
IPR027498	Ribosomal_S2_euk

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015935	small ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.365880.1	Cucsa.365880.1	mRNA
Cucsa.365880.2	Cucsa.365880.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 160..174 score: 8.3E-33coord: 122..139 score: 8.3E-33coord: 18..36 score: 8.3E-33coord: 48..57 score: 8.3E-33coord: 97..114 score: 8.3E-33coord: 139..150 score: 8.3
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 120..185 score: 4.9E-13coord: 21..115 score: 8.0
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 5..202 score: 4.4E
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAMs	TIGR01012	TIGR01012	coord: 13..205 score: 2.6
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 18..29 scor
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 122..146 scor
IPR023591	Ribosomal protein S2, flavodoxin-like domain	unknown	SSF52313	Ribosomal protein S2	coord: 13..202 score: 4.97
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 5..216 score: 45
None	No IPR available	GENE3D	G3DSA:3.40.50.10490		coord: 33..204 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.365880	Csa6G016990	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.365880	MELO3C024994	Melon (DHL92) v3.5.1	cgymeB592
Cucsa.365880	ClCG08G002570	Watermelon (Charleston Gray)	cgywcgB627
Cucsa.365880	CSPI06G02560	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.365880	CmaCh09G012840	Cucurbita maxima (Rimu)	cgycmaB0989
Cucsa.365880	CmaCh01G009290	Cucurbita maxima (Rimu)	cgycmaB1003
Cucsa.365880	CmoCh09G012420	Cucurbita moschata (Rifu)	cgycmoB0991
Cucsa.365880	CmoCh01G009550	Cucurbita moschata (Rifu)	cgycmoB1003
Cucsa.365880	Lsi08G002420	Bottle gourd (USVL1VR-Ls)	cgylsiB591
Cucsa.365880	Cp4.1LG02g09360	Cucurbita pepo (Zucchini)	cgycpeB0964
Cucsa.365880	Cp4.1LG06g09530	Cucurbita pepo (Zucchini)	cgycpeB0967
Cucsa.365880	MELO3C024994.2	Melon (DHL92) v3.6.1	cgymedB588
Cucsa.365880	CsaV3_6G002760	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.365880	Cla97C08G146520	Watermelon (97103) v2	cgywmbB633
Cucsa.365880	Bhi04G001759	Wax gourd	cgywgoB733
Cucsa.365880	Carg24107	Silver-seed gourd	carcgyB0757

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.365880	Watermelon (Charleston Gray)	cgywcgB622
Cucsa.365880	Watermelon (97103) v1	cgywmB656
Cucsa.365880	Watermelon (97103) v2	cgywmbB627