Carg24107 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24107
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein SA
Location	Cucurbita_argyrosperma_scaffold_177 : 218304 .. 221566 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCTCTCCAGTTCGTTGAGCATTGCTGCGCCGAAGAGCACGAATCCCTTCTCCTTTCTTTTTCTCTGTTGATTACCAGATTCCGCCATGGCGACTGGAGCTGCACCGGCGCGTCAACTCTCACAGAAAGAGGCCGACATTCAGATGATGTTGGCAGCCGAGGTTCATCTTGGCACCAAAAATTGCAATTTTCAAATGGAACGATACGTTTTTAAGCGCCGAAATGATGGTGTGTTTAATGTCTACTCGCCTTTAGATCTTCTCTGGTTTGTTGTCTTAGTTTTGTTTTCTGTTTTTCATTCTTCTCGGTGATTTTCGCTTGGAGTGATTCAGAAAGTGCCAATGGACATGTTGTTATTGCTATTTAATTTCATTCCCTAGAATTTCTAAGAACATATTGTGATTTGAATTTTATTTATTTTTAGGTATGACGTTTCATTCTTTGGCTGTTTTTTTTGTTTATCTCTTTAAATTGCTACTCTATTTTCCGAAGAATTTTCTCCAAATTCTCCCTTGATGAATTTTACATTTCTAGTTTGATACTAACTTCAGATGCAATTTTGCATTTTATTGCTGAATGTTGATTTATAGGGTTTGTTTTTCTATCGCGTTGAACTGGAGAACTTAGTCTAATCTACATGGTTTTGAGAATCGGTTTTCTTTAGTCTGTTGCCCAAAAGGAACTCTGAGTTTATTAAAGGGGTCAATGCTGATTGTCTCTACAGCATGTCAATGTTAGGTTATTTGAATTGTTGCAGTGTGGTCGTGTACAATTTTTTCCATTTTAAAGTTTTCCTTTTGCTTTCAGGTATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTTACATGGCTGCTAGAGTTATTGTGGCTATAGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCCTATGGTCAGAGGGCTGTTTTGAAGTTCGCTCAGTACACTGGTACTCATGCTATTGCAGGAAGGCACACTCCCGGAACATTTACCAACCAGCTTCAGACGTCGTTCAATGAACCGCGTCTTCTTATACTTACTGATCCTAGAACTGATCATCAGGTGTTTAATTTAGAAATCAATAGCACAGTACATGGTTTCAATTTAAGTCCAAGAAGAATGATGCCTTTATATTTTCAATTATGTTTGAATTCATGCTTGTTCCTTAGATTTATTTGTGTTTGGATTCACTTGATGCTGTTCTTTGTTGACGTCGCTTTGTTGATTCGGACTTGCAGCCCATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCTAATAACAAGGGAAAACATAGCATAGGATGTCTGTTTTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGGACAATTCGTGCTGGGCACAAATGGGATGTTATGGTAAAATTCTTAATGCAATTTTGTACTTGGATTTTAGAAACCACGTTTTGGCTCAAAATTTTAAATTAATGGTGAAATATTTCATTTTGTAGGTGGATTTGTTTTTCTATCGTGAGCCTGAGGAGGCTAAGGAGAAAGAAGAGGAAGAGGCTCTTCCACCCCCAGACTTTGGCATTGCCGACTATGGTGCTGCACCACTTGTTGCCTCAGATCAATGGGCCGCACAAATTTCTGATGCTCAATGGGGTGCTGCAGATGTGGTTCCTGCTCCTGCTGCTCCAGCCGCTTCGAGTGTCGAGTGGGCCCCAGAGCCAGGTTGAATCTCGAGCTTTTGTCGTTAATTGTTTGATGGAATCCCTATCTGCCTTTTAGTGTGTCTATTCATGTAAACTAGCTTTGGTCTCCTTGAAGAACCTTTTCCTCTCAAGCTCCAGACCATTCACCTTGCTTGCTCTCCATATGAAGTTTTTGATTAGTACTTACCCATACTGCCAATTTCCCTGTTCTTTGCCATTACATTTTTTTTTTTCATTTTAGACATCACTGACCAGTAGTTATAAGATGAAACTGACTAGTTGAGGTTGGTCTCAGTTTGATTTCCTGTTTGAGGTGTTAAGATTTAAGATTTTAATGCCTAGTGTAACCGCCCTAGTCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTTCCTTTCCGGCTTCCCCTCTAAGGATTCCACGCCCTTAAAGAATGTGTTGTTCTCCTCCCCAACCGATGTGAGATCTCACAATCCACCCCCATTTGGGGCCGGCATCCTCGCTGGCACTCGTTCCCTTCTCCAACCGATGTGGGACCTCCCAATCCAGCCCCCTTTGGGGCCCGGCATCCTTGCTGACACACCGCCTTGTGTCCATTCCCCTTCGGGGCTCAGCCTTCTCGCTTACACATCGCCCGGTGTTTGGTTCTGATACCATTTGTAATGGTCTAAGCCCACCTCTAGCAGATATTGTCCTCTTTGGGCTTTTCCTCTCGAGCTTCCCCTCAAGGTTTTTTAAATGTGTCCGCTAGGAAAAGGTTTCCACACCCTTATAAAGAATGTTTCGTACCCCCAAAGAGGCGTTAACCATGACAAGAGTGCTCCTAAGCCCAAATGATATGGTTACTTCCACAATTTAGTGATCCCACAAAGCAAGTGACAGTATTGTGCTAATTAAGTGCTTTGCTGGCTTTTCATATCTTATATAACATTAATTTTCCTTTCCTCACTCGACATGCATTTCTTCTCACTTTCTTTCCCTTGTTTTTTCTTTGTTGCAGTTCCATTGGCAGCAAATGAGTGGGAGGCTGCAGTAGCACCTCCACCACCGGCACCACCGGCTGCTGATGGTGCAGCACCTTCCTCCGCCAGTTGGTTTTGAGAGAAGTCCTAACGATTTGTACCCAAATGGATTCATTATTATGAGTTTGCTTGTTTATTTAGGAATATCACCCTTCTTTTTTGGCTGCATAATCGACTCAATTTTGTTTGTTAGTCCCAGTTTTAGATTTAAAGATTGAATTATATCTGACTTCCATTTACCCTTTTTGAGATATATGAGAAATTACATGATCTTTTGCATACAAACAATATATTAATTGTGGGTGGTAGAAGCTCCATTTTTCGTCTAAACACCTTGAATTTGATATACGTACCCAGATTCTTTTTTCTTCCCTTGTGAGTTATGGCGTTTCTCTTTACATTAGAATGTGAGTTTGTGGACACCTTGCGAGAAAACATGGGTAGGACATTCTACAAAAACATGGGTAGGGTAAACTTGCAAGAAACATCGGCAGTGCG

mRNA sequence

TTTCTCTCTCCAGTTCGTTGAGCATTGCTGCGCCGAAGAGCACGAATCCCTTCTCCTTTCTTTTTCTCTGTTGATTACCAGATTCCGCCATGGCGACTGGAGCTGCACCGGCGCGTCAACTCTCACAGAAAGAGGCCGACATTCAGATGATGTTGGCAGCCGAGGTTCATCTTGGCACCAAAAATTGCAATTTTCAAATGGAACGATACGTTTTTAAGCGCCGAAATGATGGTATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTTACATGGCTGCTAGAGTTATTGTGGCTATAGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCCTATGGTCAGAGGGCTGTTTTGAAGTTCGCTCAGTACACTGGTACTCATGCTATTGCAGGAAGGCACACTCCCGGAACATTTACCAACCAGCTTCAGACGTCGTTCAATGAACCGCGTCTTCTTATACTTACTGATCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCTAATAACAAGGGAAAACATAGCATAGGATGTCTGTTTTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGGACAATTCGTGCTGGGCACAAATGGGATGTTATGGTGGATTTGTTTTTCTATCGTGAGCCTGAGGAGGCTAAGGAGAAAGAAGAGGAAGAGGCTCTTCCACCCCCAGACTTTGGCATTGCCGACTATGGTGCTGCACCACTTGTTGCCTCAGATCAATGGGCCGCACAAATTTCTGATGCTCAATGGGGTGCTGCAGATGTGGTTCCTGCTCCTGCTGCTCCAGCCGCTTCGAGTGTCGAGTGGGCCCCAGAGCCAGTTCCATTGGCAGCAAATGAGTGGGAGGCTGCAGTAGCACCTCCACCACCGGCACCACCGGCTGCTGATGGTGCAGCACCTTCCTCCGCCAGTTGGTTTTGAGAGAAGTCCTAACGATTTGTACCCAAATGGATTCATTATTATGAGTTTGCTTGTTTATTTAGGAATATCACCCTTCTTTTTTGGCTGCATAATCGACTCAATTTTGTTTGTTAGTCCCAGTTTTAGATTTAAAGATTGAATTATATCTGACTTCCATTTACCCTTTTTGAGATATATGAGAAATTACATGATCTTTTGCATACAAACAATATATTAATTGTGGGTGGTAGAAGCTCCATTTTTCGTCTAAACACCTTGAATTTGATATACGTACCCAGATTCTTTTTTCTTCCCTTGTGAGTTATGGCGTTTCTCTTTACATTAGAATGTGAGTTTGTGGACACCTTGCGAGAAAACATGGGTAGGACATTCTACAAAAACATGGGTAGGGTAAACTTGCAAGAAACATCGGCAGTGCG

Coding sequence (CDS)

ATGGCGACTGGAGCTGCACCGGCGCGTCAACTCTCACAGAAAGAGGCCGACATTCAGATGATGTTGGCAGCCGAGGTTCATCTTGGCACCAAAAATTGCAATTTTCAAATGGAACGATACGTTTTTAAGCGCCGAAATGATGGTATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTTACATGGCTGCTAGAGTTATTGTGGCTATAGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCCTATGGTCAGAGGGCTGTTTTGAAGTTCGCTCAGTACACTGGTACTCATGCTATTGCAGGAAGGCACACTCCCGGAACATTTACCAACCAGCTTCAGACGTCGTTCAATGAACCGCGTCTTCTTATACTTACTGATCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCTAATAACAAGGGAAAACATAGCATAGGATGTCTGTTTTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGGACAATTCGTGCTGGGCACAAATGGGATGTTATGGTGGATTTGTTTTTCTATCGTGAGCCTGAGGAGGCTAAGGAGAAAGAAGAGGAAGAGGCTCTTCCACCCCCAGACTTTGGCATTGCCGACTATGGTGCTGCACCACTTGTTGCCTCAGATCAATGGGCCGCACAAATTTCTGATGCTCAATGGGGTGCTGCAGATGTGGTTCCTGCTCCTGCTGCTCCAGCCGCTTCGAGTGTCGAGTGGGCCCCAGAGCCAGTTCCATTGGCAGCAAATGAGTGGGAGGCTGCAGTAGCACCTCCACCACCGGCACCACCGGCTGCTGATGGTGCAGCACCTTCCTCCGCCAGTTGGTTTTGA

Protein sequence

MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGAAPSSASWF

Homology

[Close]

BLAST of Carg24107 vs. NCBI nr
Match: XP_022925394.1 (40S ribosomal protein SA-like [Cucurbita moschata] >XP_022973502.1 40S ribosomal protein SA-like [Cucurbita maxima] >XP_023535006.1 40S ribosomal protein SA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 561.2 bits (1445), Expect = 2.1e-156
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEXXXXXXXXXXXXXXXX 300
           DQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEXXXXXXXXXXXXXXXX
Sbjct: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEXXXXXXXXXXXXXXXX 300

Query: 301 APSSASWF 309
           APSSASWF
Sbjct: 301 APSSASWF 308

[Close]

BLAST of Carg24107 vs. NCBI nr
Match: XP_004138372.1 (PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus] >KGN45883.1 hypothetical protein Csa_6G016990 [Cucumis sativus])

HSP 1 Score: 501.1 bits (1289), Expect = 2.6e-138
Identity = 262/309 (84.79%), Postives = 270/309 (87.38%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPE              DFGIADY AAPL  S
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240

Query: 241 DQWAAQISDAQWGAADVVPAPA-APAASSVEWAPEPVPLAANEWEXXXXXXXXXXXXXXX 300
           DQW +QI DAQWGAAD +P+PA    AS  EWAPEPV LAA+ W+ XXXXXXXXXX    
Sbjct: 241 DQWTSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAXXXXXXXXXXSAEG 300

Query: 301 XAPSSASWF 309
            APSSASWF
Sbjct: 301 TAPSSASWF 308

[Close]

BLAST of Carg24107 vs. NCBI nr
Match: XP_022972886.1 (40S ribosomal protein SA-like [Cucurbita maxima])

HSP 1 Score: 501.1 bits (1289), Expect = 2.6e-138
Identity = 265/289 (91.70%), Postives = 269/289 (93.08%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAA-----PAASSVEWAPEPVPLAANEWE 285
           DQW+AQI DAQWGAADVV  PAA        SSVEW  EP  LAA+ W+
Sbjct: 241 DQWSAQIPDAQWGAADVV-VPAATXXXXXXPSSVEWTSEPAALAADGWD 288

[Close]

BLAST of Carg24107 vs. NCBI nr
Match: XP_008463065.1 (PREDICTED: 40S ribosomal protein SA-like [Cucumis melo])

HSP 1 Score: 496.1 bits (1276), Expect = 8.5e-137
Identity = 263/309 (85.11%), Postives = 271/309 (87.70%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPE              DFGIADY AAPL AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-AS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPA-ASSVEWAPEPVPLAANEWEXXXXXXXXXXXXXXX 300
           DQW +QI DAQWGAAD +P PAA   AS  EWAPEPV L A+ W+  XXXXXXXXXXX  
Sbjct: 241 DQWTSQIPDAQWGAADALPPPAAVVPASGAEWAPEPVALTADGWD-AXXXXXXXXXXXDG 300

Query: 301 XAPSSASWF 309
            AP+SASWF
Sbjct: 301 TAPASASWF 307

[Close]

BLAST of Carg24107 vs. NCBI nr
Match: XP_022152685.1 (40S ribosomal protein SA-like [Momordica charantia])

HSP 1 Score: 495.7 bits (1275), Expect = 1.1e-136
Identity = 253/309 (81.88%), Postives = 263/309 (85.11%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATATAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPE             PD+GIAD+GAAPLVAS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPE-EAKEQEEEEAVAPDYGIADFGAAPLVAS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPL-AANEWEXXXXXXXXXXXXXXX 300
           DQWA QISDAQWGA DVVPA AAP  S+VEW+ EPV   AA+ W+               
Sbjct: 241 DQWAGQISDAQWGAPDVVPAAAAPPVSNVEWSQEPVATGAADGWD---AAVPPPAPAVEG 300

Query: 301 XAPSSASWF 309
            AP ++ WF
Sbjct: 301 GAPPASGWF 304

[Close]

BLAST of Carg24107 vs. TAIR10
Match: AT1G72370.1 (40s ribosomal protein SA)

HSP 1 Score: 410.6 bits (1054), Expect = 8.5e-115
Identity = 215/270 (79.63%), Postives = 225/270 (83.33%), Query Frame = 0


Query: 1   MAT-GAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A + QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSF 120
           KL MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPE       XXXXXX               
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEXXXXXXXXXXXXXXXXXXXXG 240

Query: 241 SDQW-AAQISDAQWGAADVVPAPAAPAASS 269
            DQW  AQI DA W      P  AAPAA+S
Sbjct: 241 GDQWTTAQIPDAAWPGEGQAPISAAPAAAS 270

[Close]

BLAST of Carg24107 vs. TAIR10
Match: AT3G04770.1 (40s ribosomal protein SA B)

HSP 1 Score: 372.5 bits (955), Expect = 2.6e-103
Identity = 180/203 (88.67%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 2   ATGAAPA-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 61
           A G A A RQ+S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+K
Sbjct: 3   ANGVATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62

Query: 62  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 121
           L MAARVIVAIENP+DIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF+
Sbjct: 63  LQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFS 122

Query: 122 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 181
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWL
Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182

Query: 182 LARMVLQMRGTIRAGHKWDVMVD 204
           LARMVLQMRGTI A  KWDVMV+
Sbjct: 183 LARMVLQMRGTILAAQKWDVMVN 205

[Close]

BLAST of Carg24107 vs. Swiss-Prot
Match: sp|A5BUU4|RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 1.2e-121
Identity = 239/310 (77.10%), Postives = 251/310 (80.97%), Query Frame = 0


Query: 5   AAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMA 64
           A P R LSQKE DIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL +A
Sbjct: 2   ATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 61

Query: 65  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIVAIENP+DIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPL--VASDQ 244
           VLQMR TI  GHKWDVMVDLFFYREPE             PD+GI DY A  L  +    
Sbjct: 182 VLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGD 241

Query: 245 WAAQISDA-QWGA--ADVVPAPAAPAASSVEWAPEP--VPLAANEWEXXXXXXXXXXXXX 304
           W A I+DA QWGA    V P PA P ++  + AP P  VP+A + W+ XXXXXXXXXXXX
Sbjct: 242 WGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAXXXXXXXXXXXX 301

Query: 305 XXXAPSSASW 308
           X   P  A W
Sbjct: 302 XEGVPPPAGW 311

[Close]

BLAST of Carg24107 vs. Swiss-Prot
Match: sp|O65751|RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.7e-118
Identity = 219/284 (77.11%), Postives = 233/284 (82.04%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP+RQL+QKEADIQMMLAA+VHLGTKNCNFQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AAR+IVAIEN QDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIR G KWDVMVDLFFYREPE             PD+ IAD+  + + + 
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPE-EAKQPEEDEVAAPDYAIADFNVSAIPSD 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEW-APEPVPLAANEW 284
            QW A I D  W  A   P PA PA   V W APE V   A +W
Sbjct: 241 GQWPAAI-DQPWNDAVPQPIPAVPA---VNWAAPEAV---AGDW 276

[Close]

BLAST of Carg24107 vs. Swiss-Prot
Match: sp|O22518|RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.7e-117
Identity = 217/267 (81.27%), Postives = 226/267 (84.64%), Query Frame = 0


Query: 5   AAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMA 64
           AAP RQLSQKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTWEKL +A
Sbjct: 9   AAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLA 68

Query: 65  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 69  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 128

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 129 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 188

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVASDQWA 244
           VLQMRGTIR G KWDVMVDLFFYREPE     XXX      D+ I D+ A  + A  QW 
Sbjct: 189 VLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQXXXEAPAV-DYAITDFNAGAIAADGQWP 248

Query: 245 AQISDAQWGAADVVPAPAAPAASSVEW 272
             I D  W  +D VP P  PA   V W
Sbjct: 249 GTI-DQSW--SDAVPQP-IPAVPGVNW 270

[Close]

BLAST of Carg24107 vs. Swiss-Prot
Match: sp|O80377|RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.9e-116
Identity = 216/280 (77.14%), Postives = 233/280 (83.21%), Query Frame = 0


Query: 5   AAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMA 64
           A+ AR+LS  EADIQMM AAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL +A
Sbjct: 2   ASGARELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLMLA 61

Query: 65  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV+IENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62  ARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVASDQWA 244
           VLQMRG I  GHKW+VMVDLFFYREPE              D+ +ADY AAP+  +DQW 
Sbjct: 182 VLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVG-DY-VADYAAAPIGGADQWN 241

Query: 245 AQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWE 285
           A I DAQWG   V PA +A  A +  W  +  P+A + W+
Sbjct: 242 A-IPDAQWGGDVVQPANSAVPAGT--WT-DAGPIAGDGWD 275

[Close]

BLAST of Carg24107 vs. Swiss-Prot
Match: sp|Q08682|RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3)

HSP 1 Score: 410.6 bits (1054), Expect = 1.5e-113
Identity = 215/270 (79.63%), Postives = 225/270 (83.33%), Query Frame = 0


Query: 1   MAT-GAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A + QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSF 120
           KL MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPE       XXXXXX               
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEXXXXXXXXXXXXXXXXXXXXG 240

Query: 241 SDQW-AAQISDAQWGAADVVPAPAAPAASS 269
            DQW  AQI DA W      P  AAPAA+S
Sbjct: 241 GDQWTTAQIPDAAWPGEGQAPISAAPAAAS 270

[Close]

BLAST of Carg24107 vs. TrEMBL
Match: tr|A0A0A0K8X1|A0A0A0K8X1_CUCSA (40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_6G016990 PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 1.7e-138
Identity = 262/309 (84.79%), Postives = 270/309 (87.38%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPE              DFGIADY AAPL  S
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240

Query: 241 DQWAAQISDAQWGAADVVPAPA-APAASSVEWAPEPVPLAANEWEXXXXXXXXXXXXXXX 300
           DQW +QI DAQWGAAD +P+PA    AS  EWAPEPV LAA+ W+ XXXXXXXXXX    
Sbjct: 241 DQWTSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAXXXXXXXXXXSAEG 300

Query: 301 XAPSSASWF 309
            APSSASWF
Sbjct: 301 TAPSSASWF 308

[Close]

BLAST of Carg24107 vs. TrEMBL
Match: tr|A0A1S3CJX7|A0A1S3CJX7_CUCME (40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103501303 PE=3 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 5.6e-137
Identity = 263/309 (85.11%), Postives = 271/309 (87.70%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPE              DFGIADY AAPL AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-AS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPA-ASSVEWAPEPVPLAANEWEXXXXXXXXXXXXXXX 300
           DQW +QI DAQWGAAD +P PAA   AS  EWAPEPV L A+ W+  XXXXXXXXXXX  
Sbjct: 241 DQWTSQIPDAQWGAADALPPPAAVVPASGAEWAPEPVALTADGWD-AXXXXXXXXXXXDG 300

Query: 301 XAPSSASWF 309
            AP+SASWF
Sbjct: 301 TAPASASWF 307

[Close]

BLAST of Carg24107 vs. TrEMBL
Match: tr|A0A1S3CDH5|A0A1S3CDH5_CUCME (40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103499190 PE=3 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 5.2e-135
Identity = 248/288 (86.11%), Postives = 259/288 (89.93%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATTTAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPE    XXXXX    PD+GIADYG APLVAS
Sbjct: 181 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEXXXXXAVAPPDYGIADYGGAPLVAS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAA----PAASSVEWAPEPVPLAANEWE 285
           DQWA QISDAQWGA D++PAP A    P  S+VEW  EPV LA++ W+
Sbjct: 241 DQWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPVALASDGWD 287

[Close]

BLAST of Carg24107 vs. TrEMBL
Match: tr|A0A0A0L946|A0A0A0L946_CUCSA (40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_3G646520 PE=3 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 1.7e-133
Identity = 247/290 (85.17%), Postives = 259/290 (89.31%), Query Frame = 0


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATATAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPE    XXXXX    PD+GIADYG APLVAS
Sbjct: 181 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEXXXXXAVAPPDYGIADYGGAPLVAS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAA-----PAASSVEWAPEP-VPLAANEWE 285
           DQWA QISDAQWGA D++PAP A     P  S+VEW  EP V +A++ W+
Sbjct: 241 DQWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWD 289

[Close]

BLAST of Carg24107 vs. TrEMBL
Match: tr|A0A2I4G7N3|A0A2I4G7N3_9ROSI (40S ribosomal protein SA OS=Juglans regia OX=51240 GN=LOC109005420 PE=3 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 1.5e-126
Identity = 239/282 (84.75%), Postives = 245/282 (86.88%), Query Frame = 0


Query: 3   TGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLY 62
           T AAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL 
Sbjct: 4   TAAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 63

Query: 63  MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEP 122
           +AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSFNEP
Sbjct: 64  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEP 123

Query: 123 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 182
           RLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIP+NNKGKHSIGCLFWLLA
Sbjct: 124 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPSNNKGKHSIGCLFWLLA 183

Query: 183 RMVLQMRGTIRAGHKWDVMVDLFFYREPEXXXXXXXXXXXXXPDFGIADYGAAPLVASDQ 242
           RMVLQMRGTIR GHKWDVMVDLFFYREPE   XXXXXX    PD+G+ADY AAPL ASD 
Sbjct: 184 RMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKXXXXXXAVAIPDYGLADYSAAPL-ASDH 243

Query: 243 WAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWE 285
           W  Q SDAQW      P  A PAA    W  EPVPL   EW+
Sbjct: 244 WPVQGSDAQWNPDVQQPISAVPAA---PWGSEPVPL-TGEWD 280

The following BLAST results are available for this feature:

BLAST of Carg24107 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925394.1	2.1e-156	100.00	40S ribosomal protein SA-like [Cucurbita moschata] >XP_022973502.1 40S ribosomal...	[more]
XP_004138372.1	2.6e-138	84.79	PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus] >KGN45883.1 hypotheti...	[more]
XP_022972886.1	2.6e-138	91.70	40S ribosomal protein SA-like [Cucurbita maxima]	[more]
XP_008463065.1	8.5e-137	85.11	PREDICTED: 40S ribosomal protein SA-like [Cucumis melo]	[more]
XP_022152685.1	1.1e-136	81.88	40S ribosomal protein SA-like [Momordica charantia]	[more]

BLAST of Carg24107 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72370.1	8.5e-115	79.63	40s ribosomal protein SA	[more]
AT3G04770.1	2.6e-103	88.67	40s ribosomal protein SA B	[more]

BLAST of Carg24107 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A5BUU4\|RSSA_VITVI	1.2e-121	77.10	40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV...	[more]
sp\|O65751\|RSSA_CICAR	2.7e-118	77.11	40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1	[more]
sp\|O22518\|RSSA_SOYBN	1.7e-117	81.27	40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|O80377\|RSSA_DAUCA	1.9e-116	77.14	40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1	[more]
sp\|Q08682\|RSSA1_ARATH	1.5e-113	79.63	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3	[more]

BLAST of Carg24107 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8X1\|A0A0A0K8X1_CUCSA	1.7e-138	84.79	40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_6G016990 PE=3 SV=1	[more]
tr\|A0A1S3CJX7\|A0A1S3CJX7_CUCME	5.6e-137	85.11	40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103501303 PE=3 SV=1	[more]
tr\|A0A1S3CDH5\|A0A1S3CDH5_CUCME	5.2e-135	86.11	40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103499190 PE=3 SV=1	[more]
tr\|A0A0A0L946\|A0A0A0L946_CUCSA	1.7e-133	85.17	40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_3G646520 PE=3 SV=1	[more]
tr\|A0A2I4G7N3\|A0A2I4G7N3_9ROSI	1.5e-126	84.75	40S ribosomal protein SA OS=Juglans regia OX=51240 GN=LOC109005420 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR023591	Ribosomal_S2_flav_dom_sf
IPR027498	Ribosomal_S2_euk
IPR018130	Ribosomal_S2_CS
IPR005707	Ribosomal_S2_euk/arc
IPR001865	Ribosomal_S2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24107-RA	Carg24107-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 122..139 score: 44.62 coord: 97..114 score: 45.13 coord: 18..36 score: 35.79 coord: 139..150 score: 46.03 coord: 48..57 score: 64.92 coord: 160..174 score: 53.64
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 21..115 e-value: 6.5E-14 score: 51.6 coord: 120..185 e-value: 1.3E-11 score: 44.0
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 21..187 e-value: 7.52067E-69 score: 214.368
None	No IPR available	GENE3D	G3DSA:3.40.50.10490		coord: 17..222 e-value: 3.9E-99 score: 332.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..308
None	No IPR available	PANTHER	PTHR11489:SF15	40S RIBOSOMAL PROTEIN SA-1-RELATED	coord: 4..295
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAM	TIGR01012	TIGR01012	coord: 13..209 e-value: 5.3E-96 score: 317.7
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 4..295
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 122..146
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 18..29
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 5..286 score: 50.44
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	SSF52313	Ribosomal protein S2	coord: 13..203

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24107	Cla003782	Watermelon (97103) v1	carwmB0675
Carg24107	Csa6G016990	Cucumber (Chinese Long) v2	carcuB0699
Carg24107	MELO3C024994	Melon (DHL92) v3.5.1	carmeB0678
Carg24107	ClCG08G002570	Watermelon (Charleston Gray)	carwcgB0653
Carg24107	CSPI06G02560	Wild cucumber (PI 183967)	carcpiB0711
Carg24107	Cucsa.365880	Cucumber (Gy14) v1	carcgyB0757
Carg24107	CmaCh09G012840	Cucurbita maxima (Rimu)	carcmaB0953
Carg24107	CmoCh09G012420	Cucurbita moschata (Rifu)	carcmoB0929
Carg24107	Lsi08G002420	Bottle gourd (USVL1VR-Ls)	carlsiB617
Carg24107	Cp4.1LG06g09530	Cucurbita pepo (Zucchini)	carcpeB0954
Carg24107	CsGy6G002620	Cucumber (Gy14) v2	carcgybB0675
Carg24107	MELO3C024994.2	Melon (DHL92) v3.6.1	carmedB0690
Carg24107	CsaV3_6G002760	Cucumber (Chinese Long) v3	carcucB0713
Carg24107	Cla97C08G146520	Watermelon (97103) v2	carwmbB0703
Carg24107	Bhi04G001759	Wax gourd	carwgoB0794

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None