CmaCh09G012840 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G012840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein SA
Location	Cma_Chr09 : 8831133 .. 8833940 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCAGTTCGTTGAGCATTGCTGCGCCTAAGAGCACTAATCCCGTCTCCTTTCGTTCGCTCTGTTGATTACCAGATTCCGCCATGGCGACTGGAGCTGCACCGGCGCGTCAACTCTCACAGAAAGAGGCCGACATTCAGATGATGTTGGCAGCCGAGGTTCATCTTGGCACCAAAAATTGCAATTTTCAAATGGAACGATACGTTTTTAAGCGCAGAAATGATGGTGTGTTTTCAGTTTACACGCCTTTAGATCTTCTCTGGTTTGTTGTCTTAGTTTGTTTTCTGTTTTTCATTCTTATCGGTGATTTTCGCTTGGAGTGATTTAGCAAGTGCCAACGGGCGTGTTGTTATTGTTGTTGAATTTATAAGAATATATTGTGATTTAAATTTTATTTATTTTTAGGCGTGAAGTTTTAGTCTTTGGCTATTTTTCTGTTTATCTCTTTAAATTGTTACTGTATTTTCCGAAGAATTTTCTCCAAATTCTCCCTCGATGAATTTTACATTTCGGTTTGACACTAATTTCTGATGCAATTTTACATTTCGGGTTTGTTTTTCTATCGCGTTGAACTGGAGAACTTAGTCTAATCTACATGGTTTTGAGAATCGGTTTTCTTTAGTCTGTTGCCCAAAAGGAACTCTTGAGTTTATTGAAGGGGTCAATGCTGATCGTCTCTACAACATGTCAATGTTAGGTTATCTGAATTGTTGCATTGTGGTCGTGTACAATTTTTTCATTTTAAAGTTCTCCTTTTGCTTTCAGGTATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTTACATGGCTGCTAGAGTTATTGTGGCTATAGAGAATCCTCAAGATATCATTGTTCAATCTGCTAGGCCCTATGGTCAGAGGGCTGTTTTGAAGTTTGCTCAGTACACTGGTACTCATGCTATTGCAGGAAGGCACACTCCCGGAACATTTACCAACCAGCTACAAACGTCGTTCAATGAACCACGTCTTCTTATACTTACTGATCCTAGAACTGATCATCAGGTGTTTAATTTAGAAATCAATAACAGTACATGGTTTCAATTTAAGTCCAAGAAGAATGATGCCTTTATATTCTCAATTATGTTTGAATTCATGCTTGTTCCCTAGATTTATTTGTGTTTGGATTCACTTGATGCTGTTCTTTGTTGATGTCGCTTTGTTGGTTCCAACCTGCAGCCTATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCTAATAACAAGGGAAAACATAGCATAGGATGTCTGTTTTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGAACAATTCGTGCTGGGCACAAATGGGATGTTATGGTAAAATTCTTAATGCAATTTTGTACTTTGATTTTAGAAACCACGTTTTGGCTCAAAATTTTAAATTAATTGCGAACTATTTCCTTGTGTAGGTGGATTTGTTTTTCTATCGTGAGCCAGAGGAGGCTAAGGAGAAAGAAGAGGAAGAAGCTCTTCCACCCCCAGACTTCGGCATTGCTGACTATGGTGCTGCTCCACTTGTTGCCTCAGATCAATGGGCCGCACAAATTTCTGATGCTCAATGGGGTGCTGCAGATGTGGTTCCTGCTCCTGCTGCTCCAGCCGCTTCGAGTGTCGAGTGGGCCCCAGAGCCAGGTTGAATCTTGAGCTTTTGTCGTTAATTGTTTATGGAATCCCTATCTGCCTTTTAGTGTGTCTATTCATGTAAACTAGCTTTGGTCTCTTTGAATAACCTTTTCCTCTAAAGCTCCAAACCATTCATCTTGCTTGCTCTCCATATGAAGTTTTTGATTAGTACCTACCCATACTGCCAAATACCCTGTTCTTTGCCATTACATTGTTTTTGCATTTTGGACATCACTGACTAGTAGTTGTAAGATGCAACTAGTTGAGGTTGGTTTCAGTTTGATTTCGTGTTTGAGGTGTTCTCTTGATTTATGATTTTAATGCCTAGTGTAACTGCCCAAGGCCACCGCTAGGAGATAATGTCCTCTTTGGGACTTTTCCTTTCAGACTTTCCCTCAAGGTTTTTAAAACGTGTCTGCTAAGGAGAGGTTTCTACACCTTTATAAAGAATGTTTCGTTCTCCTCCCCAATTGAGGTGGAATCTCACAATCTACCCTTATTTGTGGCCTATCCTCACCGACACTTGTGATTGAAGTGGGACTCCAAAATCCACCACTTTTAGGGCCTGGCGTCCTTGCTAGCACACGGTCTTATTTCCACCCCCTTTGGGGCTCAGCCTCCTCGCTGGAACATTGCTCGGTGTTTTGACTCTGATACCATTCGTAATTGCCCAAGCCCACTACTAATAGAAATGTTTCCACACCTTTATAAAGAATGTTTTGGTTTCCTCCCCAAACCAGGTGGAATCTCACACCTAAACTATGCTTGTGGCGTTGACCATAACAAGAGTGCTTTTAAAGGGTCGAAAGTACTCCTAATAAAAGCCCAAATGACATGGTTGCTTCTACAATTTAGTGCTCCCACAAAGCAAGTGATAGTGTGGTGCTAATGATATGGTCTCAATATCTTGCTGGCTTTCAATAACATCAATTTTCCTTTCCTACTCACACTCTACATGCATTTCTTCTCACTTTTTCACCCTTGTTTTTTCTTTGTTGCAGTTCCATTGGCAGCAAATGAGTGGGAGGCTGCAGTAGCACCTCCACCACCGGCACCACCAGCTGCTGATGGTGCAGCACCTTCCTCCGCCAGTTGGTTTTGA

mRNA sequence

TCTCCAGTTCGTTGAGCATTGCTGCGCCTAAGAGCACTAATCCCGTCTCCTTTCGTTCGCTCTGTTGATTACCAGATTCCGCCATGGCGACTGGAGCTGCACCGGCGCGTCAACTCTCACAGAAAGAGGCCGACATTCAGATGATGTTGGCAGCCGAGGTTCATCTTGGCACCAAAAATTGCAATTTTCAAATGGAACGATACGTTTTTAAGCGCAGAAATGATGGTATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTTACATGGCTGCTAGAGTTATTGTGGCTATAGAGAATCCTCAAGATATCATTGTTCAATCTGCTAGGCCCTATGGTCAGAGGGCTGTTTTGAAGTTTGCTCAGTACACTGGTACTCATGCTATTGCAGGAAGGCACACTCCCGGAACATTTACCAACCAGCTACAAACGTCGTTCAATGAACCACGTCTTCTTATACTTACTGATCCTAGAACTGATCATCAGCCTATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCTAATAACAAGGGAAAACATAGCATAGGATGTCTGTTTTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGAACAATTCGTGCTGGGCACAAATGGGATGTTATGGTGGATTTGTTTTTCTATCGTGAGCCAGAGGAGGCTAAGGAGAAAGAAGAGGAAGAAGCTCTTCCACCCCCAGACTTCGGCATTGCTGACTATGGTGCTGCTCCACTTGTTGCCTCAGATCAATGGGCCGCACAAATTTCTGATGCTCAATGGGGTGCTGCAGATGTGGTTCCTGCTCCTGCTGCTCCAGCCGCTTCGAGTGTCGAGTGGGCCCCAGAGCCAGTTCCATTGGCAGCAAATGAGTGGGAGGCTGCAGTAGCACCTCCACCACCGGCACCACCAGCTGCTGATGGTGCAGCACCTTCCTCCGCCAGTTGGTTTTGA

Coding sequence (CDS)

ATGGCGACTGGAGCTGCACCGGCGCGTCAACTCTCACAGAAAGAGGCCGACATTCAGATGATGTTGGCAGCCGAGGTTCATCTTGGCACCAAAAATTGCAATTTTCAAATGGAACGATACGTTTTTAAGCGCAGAAATGATGGTATCTACATCATTAACCTTGGTAAAACATGGGAGAAACTTTACATGGCTGCTAGAGTTATTGTGGCTATAGAGAATCCTCAAGATATCATTGTTCAATCTGCTAGGCCCTATGGTCAGAGGGCTGTTTTGAAGTTTGCTCAGTACACTGGTACTCATGCTATTGCAGGAAGGCACACTCCCGGAACATTTACCAACCAGCTACAAACGTCGTTCAATGAACCACGTCTTCTTATACTTACTGATCCTAGAACTGATCATCAGCCTATTAAGGAAGGTGCCCTTGGGAACATTCCTACAATAGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATATTGGAATCCCGGCTAATAACAAGGGAAAACATAGCATAGGATGTCTGTTTTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGAACAATTCGTGCTGGGCACAAATGGGATGTTATGGTGGATTTGTTTTTCTATCGTGAGCCAGAGGAGGCTAAGGAGAAAGAAGAGGAAGAAGCTCTTCCACCCCCAGACTTCGGCATTGCTGACTATGGTGCTGCTCCACTTGTTGCCTCAGATCAATGGGCCGCACAAATTTCTGATGCTCAATGGGGTGCTGCAGATGTGGTTCCTGCTCCTGCTGCTCCAGCCGCTTCGAGTGTCGAGTGGGCCCCAGAGCCAGTTCCATTGGCAGCAAATGAGTGGGAGGCTGCAGTAGCACCTCCACCACCGGCACCACCAGCTGCTGATGGTGCAGCACCTTCCTCCGCCAGTTGGTTTTGA

Protein sequence

MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGAAPSSASWF

Homology

[Close]

BLAST of CmaCh09G012840 vs. Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 1.1e-127
Identity = 238/310 (76.77%), Postives = 253/310 (81.61%), Query Frame = 1


Query: 5   AAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMA 64
           A P R LSQKE DIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL +A
Sbjct: 2   ATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 61

Query: 65  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIVAIENP+DIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPL--VASDQ 244
           VLQMR TI  GHKWDVMVDLFFYREPEE KE+E +E +  PD+GI DY A  L  +    
Sbjct: 182 VLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGD 241

Query: 245 WAAQISDA-QWGA--ADVVPAPAAPAASSVEWAPEP--VPLAANEWEAAVAPPPPAPPAA 304
           W A I+DA QWGA    V P PA P ++  + AP P  VP+A + W+AA APP   PP  
Sbjct: 242 WGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAVPPPV 301

Query: 305 DGAAPSSASW 308
               P  A W
Sbjct: 302 VEGVPPPAGW 311

[Close]

BLAST of CmaCh09G012840 vs. Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 6.5e-125
Identity = 239/304 (78.62%), Postives = 252/304 (82.89%), Query Frame = 1


Query: 5   AAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMA 64
           AAP RQLSQKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTWEKL +A
Sbjct: 9   AAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLA 68

Query: 65  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 69  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 128

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 129 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 188

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQWA 244
           VLQMRGTIR G KWDVMVDLFFYREPEEAK++EEEEA P  D+ I D+ A  + A  QW 
Sbjct: 189 VLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEA-PAVDYAITDFNAGAIAADGQWP 248

Query: 245 AQISDAQWGAADVVPAPAAPAASSVEW-APEPVPLAA-NEWEAAVAPPP--PAPPAA-DG 304
             I D  W  +D VP P  PA   V W AP   P AA  +W  AV PP   P PP+  D 
Sbjct: 249 GTI-DQSW--SDAVPQP-IPAVPGVNWGAPAEAPAAAGGDWGEAVPPPQQIPVPPSGIDT 307

[Close]

BLAST of CmaCh09G012840 vs. Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.6e-123
Identity = 232/305 (76.07%), Postives = 252/305 (82.62%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP+RQL+QKEADIQMMLAA+VHLGTKNCNFQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AAR+IVAIEN QDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIR G KWDVMVDLFFYREPEEAK+ EE+E +  PD+ IAD+  + + + 
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDE-VAAPDYAIADFNVSAIPSD 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEW-APEPVPLAANEWEAAVAPPPPAPPAADG 300
            QW A I D  W  A   P PA PA   V W APE V   A +W  AV PP   P A   
Sbjct: 241 GQWPAAI-DQPWNDAVPQPIPAVPA---VNWAAPEAV---AGDWGEAVPPPQQIPTAGIE 297

Query: 301 AAPSS 305
           + P++
Sbjct: 301 SVPAT 297

[Close]

BLAST of CmaCh09G012840 vs. Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.6e-123
Identity = 232/299 (77.59%), Postives = 253/299 (84.62%), Query Frame = 1


Query: 5   AAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLYMA 64
           A+ AR+LS  EADIQMM AAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL +A
Sbjct: 2   ASGARELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLMLA 61

Query: 65  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV+IENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62  ARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121

Query: 125 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181

Query: 185 VLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQWA 244
           VLQMRG I  GHKW+VMVDLFFYREPEE K++EEE+ LP  D+ +ADY AAP+  +DQW 
Sbjct: 182 VLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEED-LPVGDY-VADYAAAPIGGADQWN 241

Query: 245 AQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGAAPS 304
           A I DAQWG   V PA +A  A +  W  +  P+A + W+AA APP P     D  AP+
Sbjct: 242 A-IPDAQWGGDVVQPANSAVPAGT--WT-DAGPIAGDGWDAAAAPPVPGAVGLDVPAPT 294

[Close]

BLAST of CmaCh09G012840 vs. Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 436.0 bits (1120), Expect = 3.3e-121
Identity = 229/298 (76.85%), Postives = 246/298 (82.55%), Query Frame = 1


Query: 1   MAT-GAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A + QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSF 120
           KL MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA P  ++G        +V 
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-AAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPA 297
            DQW  AQI DA W      P  AAPAA+S  W+      A   WEAA APP  AP A
Sbjct: 241 GDQWTTAQIPDAAWPGEGQAPISAAPAAAS--WSDSAAAPADGGWEAA-APPSGAPAA 295

[Close]

BLAST of CmaCh09G012840 vs. TrEMBL
Match: A0A0A0K8X1_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_6G016990 PE=3 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 2.8e-151
Identity = 273/309 (88.35%), Postives = 283/309 (91.59%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPP DFGIADY AAPL  S
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240

Query: 241 DQWAAQISDAQWGAADVVPAPA-APAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADG 300
           DQW +QI DAQWGAAD +P+PA    AS  EWAPEPV LAA+ W+AA APPPP   +A+G
Sbjct: 241 DQWTSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEG 300

Query: 301 AAPSSASWF 309
            APSSASWF
Sbjct: 301 TAPSSASWF 308

[Close]

BLAST of CmaCh09G012840 vs. TrEMBL
Match: A0A0A0L946_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_3G646520 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 8.8e-145
Identity = 268/314 (85.35%), Postives = 284/314 (90.45%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATATAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEKEEEEA+ PPD+GIADYG APLVAS
Sbjct: 181 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAA-----PAASSVEWAPEP-VPLAANEWEAAVAPPPPAP 300
           DQWA QISDAQWGA D++PAP A     P  S+VEW  EP V +A++ W+AA   PPPA 
Sbjct: 241 DQWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWDAAA--PPPA- 300

Query: 301 PAADGAAPSSASWF 309
           P+A+G AP +ASWF
Sbjct: 301 PSAEGGAP-AASWF 309

[Close]

BLAST of CmaCh09G012840 vs. TrEMBL
Match: A0A0A0KUD9_CUCSA (40S ribosomal protein SA OS=Cucumis sativus GN=Csa_4G038770 PE=3 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 1.8e-134
Identity = 253/307 (82.41%), Postives = 269/307 (87.62%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATG     QLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGTEQC-QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGT+R G+KWDVMVDLFFYREPEE KEKEEEEA+ PPD+GIAD+G+AP VA 
Sbjct: 181 LARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAP-VAV 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGA 300
           DQW   + DAQWGA +V P  AA + S+ EWA E V  AA+ W   VA PPPA P+ + A
Sbjct: 241 DQW---VPDAQWGAPNVAPTAAAASVSNAEWAQESV-RAADGW--GVAIPPPA-PSLEAA 298

Query: 301 APSSASW 308
           AP ++ W
Sbjct: 301 APPASDW 298

[Close]

BLAST of CmaCh09G012840 vs. TrEMBL
Match: A0A059ASL7_EUCGR (40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 2.1e-130
Identity = 243/308 (78.90%), Postives = 257/308 (83.44%), Query Frame = 1


Query: 3   TGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLY 62
           T AAPARQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL 
Sbjct: 7   TAAAPARQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 66

Query: 63  MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEP 122
           +AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYT THAIAGRHTPGTFTNQLQTSF+EP
Sbjct: 67  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTNTHAIAGRHTPGTFTNQLQTSFSEP 126

Query: 123 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 182
           RLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA
Sbjct: 127 RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 186

Query: 183 RMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQ 242
           RMVLQMRGTI  GHKWDVMVDLFFYREPEEAK++EEEEA+   D+GI DY A   +  DQ
Sbjct: 187 RMVLQMRGTITPGHKWDVMVDLFFYREPEEAKQQEEEEAIVAGDYGITDYAAGQAI-PDQ 246

Query: 243 WAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAP---PPPAPPAADG 302
           W +QI D+QW  A    AP  PA     W     P+AA+ WE A AP   P  APPA   
Sbjct: 247 WTSQIPDSQW--ASEAAAPPVPAIQPTGWTETAAPVAADGWEIAAAPAPAPAAAPPAVVP 306

Query: 303 AAPSSASW 308
            + + A W
Sbjct: 307 PSNNDAGW 311

[Close]

BLAST of CmaCh09G012840 vs. TrEMBL
Match: A0A059ARV8_EUCGR (40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 4.7e-130
Identity = 244/308 (79.22%), Postives = 258/308 (83.77%), Query Frame = 1


Query: 3   TGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLY 62
           T AAPARQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL 
Sbjct: 7   TAAAPARQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 66

Query: 63  MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFNEP 122
           +AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYT THAIAGRHTPGTFTNQLQTSF+EP
Sbjct: 67  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTNTHAIAGRHTPGTFTNQLQTSFSEP 126

Query: 123 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 182
           RLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA
Sbjct: 127 RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 186

Query: 183 RMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVASDQ 242
           RMVLQMRGTI  GHKWDVMVDLFFYREPEEAK++EEEEA+   D+GI DY A   +  DQ
Sbjct: 187 RMVLQMRGTITPGHKWDVMVDLFFYREPEEAKQQEEEEAIVAGDYGITDYAAGQAI-PDQ 246

Query: 243 WAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAP---PPPAPPAADG 302
           W +QI D+QW  A    AP  PA     W  E  P+AA+ WE A AP   P  APPA   
Sbjct: 247 WTSQIPDSQW--ASEAAAPPVPAIQPTGWT-ETAPVAADGWEIAAAPAPAPAAAPPAVVP 306

Query: 303 AAPSSASW 308
            + + A W
Sbjct: 307 PSNNDAGW 310

[Close]

BLAST of CmaCh09G012840 vs. TAIR10
Match: AT1G72370.1 (AT1G72370.1 40s ribosomal protein SA)

HSP 1 Score: 436.0 bits (1120), Expect = 1.9e-122
Identity = 229/298 (76.85%), Postives = 246/298 (82.55%), Query Frame = 1


Query: 1   MAT-GAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A + QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSF 120
           KL MAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEE K ++E+EA P  ++G        +V 
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-AAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPA 297
            DQW  AQI DA W      P  AAPAA+S  W+      A   WEAA APP  AP A
Sbjct: 241 GDQWTTAQIPDAAWPGEGQAPISAAPAAAS--WSDSAAAPADGGWEAA-APPSGAPAA 295

[Close]

BLAST of CmaCh09G012840 vs. TAIR10
Match: AT3G04770.1 (AT3G04770.1 40s ribosomal protein SA B)

HSP 1 Score: 372.5 bits (955), Expect = 2.6e-103
Identity = 180/203 (88.67%), Postives = 193/203 (95.07%), Query Frame = 1


Query: 2   ATGAAPA-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 61
           A G A A RQ+S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+K
Sbjct: 3   ANGVATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62

Query: 62  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 121
           L MAARVIVAIENP+DIIVQSARPYGQRAVLKFAQYTG +AIAGRHTPGTFTNQ+QTSF+
Sbjct: 63  LQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFS 122

Query: 122 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 181
           EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWL
Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182

Query: 182 LARMVLQMRGTIRAGHKWDVMVD 204
           LARMVLQMRGTI A  KWDVMV+
Sbjct: 183 LARMVLQMRGTILAAQKWDVMVN 205

[Close]

BLAST of CmaCh09G012840 vs. NCBI nr
Match: gi|449441203|ref|XP_004138372.1| (PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus])

HSP 1 Score: 542.7 bits (1397), Expect = 4.1e-151
Identity = 273/309 (88.35%), Postives = 283/309 (91.59%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPP DFGIADY AAPL  S
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-TS 240

Query: 241 DQWAAQISDAQWGAADVVPAPA-APAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADG 300
           DQW +QI DAQWGAAD +P+PA    AS  EWAPEPV LAA+ W+AA APPPP   +A+G
Sbjct: 241 DQWTSQIPDAQWGAADAIPSPAPVVPASGAEWAPEPVALAADGWDAAAAPPPPPAVSAEG 300

Query: 301 AAPSSASWF 309
            APSSASWF
Sbjct: 301 TAPSSASWF 308

[Close]

BLAST of CmaCh09G012840 vs. NCBI nr
Match: gi|659126207|ref|XP_008463065.1| (PREDICTED: 40S ribosomal protein SA-like [Cucumis melo])

HSP 1 Score: 540.4 bits (1391), Expect = 2.0e-150
Identity = 274/309 (88.67%), Postives = 283/309 (91.59%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE EEEEALPP DFGIADY AAPL AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-AS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAAPA-ASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADG 300
           DQW +QI DAQWGAAD +P PAA   AS  EWAPEPV L A+ W+AA  PPPPA  +ADG
Sbjct: 241 DQWTSQIPDAQWGAADALPPPAAVVPASGAEWAPEPVALTADGWDAAAPPPPPA-ASADG 300

Query: 301 AAPSSASWF 309
            AP+SASWF
Sbjct: 301 TAPASASWF 307

[Close]

BLAST of CmaCh09G012840 vs. NCBI nr
Match: gi|659120752|ref|XP_008460336.1| (PREDICTED: 40S ribosomal protein SA-like isoform X2 [Cucumis melo])

HSP 1 Score: 528.9 bits (1361), Expect = 6.1e-147
Identity = 271/312 (86.86%), Postives = 285/312 (91.35%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 73  MATTTAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 132

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 133 LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 192

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 193 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 252

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEKEEEEA+ PPD+GIADYG APLVAS
Sbjct: 253 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 312

Query: 241 DQWAAQISDAQWGAADVVPAPAA----PAASSVEWAPEPVPLAANEWEAAVAPPPPAPPA 300
           DQWA QISDAQWGA D++PAP A    P  S+VEW  EPV LA++ W+AAV  PPPA PA
Sbjct: 313 DQWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPVALASDGWDAAV--PPPA-PA 372

Query: 301 ADGAAPSSASWF 309
           A+G AP +ASWF
Sbjct: 373 AEGGAP-AASWF 379

[Close]

BLAST of CmaCh09G012840 vs. NCBI nr
Match: gi|659120750|ref|XP_008460335.1| (PREDICTED: 40S ribosomal protein SA-like isoform X1 [Cucumis melo])

HSP 1 Score: 524.2 bits (1349), Expect = 1.5e-145
Identity = 271/313 (86.58%), Postives = 285/313 (91.05%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 73  MATTTAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 132

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 133 LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 192

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 193 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 252

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEKEEEEA+ PPD+GIADYG APLVAS
Sbjct: 253 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 312

Query: 241 DQWAAQISDAQWGAADVVPAPAA----PAASSVEWAPEP-VPLAANEWEAAVAPPPPAPP 300
           DQWA QISDAQWGA D++PAP A    P  S+VEW  EP V LA++ W+AAV  PPPA P
Sbjct: 313 DQWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPAVALASDGWDAAV--PPPA-P 372

Query: 301 AADGAAPSSASWF 309
           AA+G AP +ASWF
Sbjct: 373 AAEGGAP-AASWF 380

[Close]

BLAST of CmaCh09G012840 vs. NCBI nr
Match: gi|449453391|ref|XP_004144441.1| (PREDICTED: 40S ribosomal protein SA [Cucumis sativus])

HSP 1 Score: 521.2 bits (1341), Expect = 1.3e-144
Identity = 268/314 (85.35%), Postives = 284/314 (90.45%), Query Frame = 1


Query: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP RQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATATAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240
           LARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEKEEEEA+ PPD+GIADYG APLVAS
Sbjct: 181 LARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVAS 240

Query: 241 DQWAAQISDAQWGAADVVPAPAA-----PAASSVEWAPEP-VPLAANEWEAAVAPPPPAP 300
           DQWA QISDAQWGA D++PAP A     P  S+VEW  EP V +A++ W+AA   PPPA 
Sbjct: 241 DQWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWDAAA--PPPA- 300

Query: 301 PAADGAAPSSASWF 309
           P+A+G AP +ASWF
Sbjct: 301 PSAEGGAP-AASWF 309

The following BLAST results are available for this feature:

BLAST of CmaCh09G012840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RSSA_VITVI	1.1e-127	76.77	40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1	[more]
RSSA_SOYBN	6.5e-125	78.62	40S ribosomal protein SA OS=Glycine max PE=2 SV=1	[more]
RSSA_CICAR	1.6e-123	76.07	40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1	[more]
RSSA_DAUCA	1.6e-123	77.59	40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1	[more]
RSSA1_ARATH	3.3e-121	76.85	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3	[more]

BLAST of CmaCh09G012840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8X1_CUCSA	2.8e-151	88.35	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_6G016990 PE=3 SV=1	[more]
A0A0A0L946_CUCSA	8.8e-145	85.35	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_3G646520 PE=3 SV=1	[more]
A0A0A0KUD9_CUCSA	1.8e-134	82.41	40S ribosomal protein SA OS=Cucumis sativus GN=Csa_4G038770 PE=3 SV=1	[more]
A0A059ASL7_EUCGR	2.1e-130	78.90	40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1	[more]
A0A059ARV8_EUCGR	4.7e-130	79.22	40S ribosomal protein SA OS=Eucalyptus grandis GN=EUGRSUZ_I02137 PE=3 SV=1	[more]

BLAST of CmaCh09G012840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72370.1	1.9e-122	76.85	40s ribosomal protein SA	[more]
AT3G04770.1	2.6e-103	88.67	40s ribosomal protein SA B	[more]

BLAST of CmaCh09G012840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441203\|ref\|XP_004138372.1\|	4.1e-151	88.35	PREDICTED: 40S ribosomal protein SA-like [Cucumis sativus]	[more]
gi\|659126207\|ref\|XP_008463065.1\|	2.0e-150	88.67	PREDICTED: 40S ribosomal protein SA-like [Cucumis melo]	[more]
gi\|659120752\|ref\|XP_008460336.1\|	6.1e-147	86.86	PREDICTED: 40S ribosomal protein SA-like isoform X2 [Cucumis melo]	[more]
gi\|659120750\|ref\|XP_008460335.1\|	1.5e-145	86.58	PREDICTED: 40S ribosomal protein SA-like isoform X1 [Cucumis melo]	[more]
gi\|449453391\|ref\|XP_004144441.1\|	1.3e-144	85.35	PREDICTED: 40S ribosomal protein SA [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001865	Ribosomal_S2
IPR005707	Ribosomal_S2_euk/arc
IPR018130	Ribosomal_S2_CS
IPR023591	Ribosomal_S2_flav_dom_sf
IPR027498	Ribosomal_S2_euk

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015935	small ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012840.1	CmaCh09G012840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 122..139 score: 3.8E-31coord: 97..114 score: 3.8E-31coord: 18..36 score: 3.8E-31coord: 139..150 score: 3.8E-31coord: 48..57 score: 3.8E-31coord: 160..174 score: 3.8
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 21..115 score: 6.7E-14coord: 120..185 score: 1.3
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 5..298 score: 1.1E
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAMs	TIGR01012	TIGR01012	coord: 13..209 score: 5.3
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 18..29 scor
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 122..146 scor
IPR023591	Ribosomal protein S2, flavodoxin-like domain	unknown	SSF52313	Ribosomal protein S2	coord: 13..203 score: 7.06
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 5..286 score: 5
None	No IPR available	GENE3D	G3DSA:3.40.50.10490		coord: 33..218 score: 1.6
None	No IPR available	PANTHER	PTHR11489:SF9	40S RIBOSOMAL PROTEIN SA	coord: 5..298 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G012840	Cucsa.365880	Cucumber (Gy14) v1	cgycmaB0989
CmaCh09G012840	Cla003782	Watermelon (97103) v1	cmawmB018
CmaCh09G012840	Csa6G016990	Cucumber (Chinese Long) v2	cmacuB032
CmaCh09G012840	MELO3C024994	Melon (DHL92) v3.5.1	cmameB026
CmaCh09G012840	ClCG08G002570	Watermelon (Charleston Gray)	cmawcgB031
CmaCh09G012840	CSPI06G02560	Wild cucumber (PI 183967)	cmacpiB033
CmaCh09G012840	CmoCh09G012420	Cucurbita moschata (Rifu)	cmacmoB028
CmaCh09G012840	Lsi08G002420	Bottle gourd (USVL1VR-Ls)	cmalsiB034
CmaCh09G012840	Cp4.1LG06g09530	Cucurbita pepo (Zucchini)	cmacpeB061
CmaCh09G012840	MELO3C024994.2	Melon (DHL92) v3.6.1	cmamedB029
CmaCh09G012840	CsaV3_6G002760	Cucumber (Chinese Long) v3	cmacucB0040
CmaCh09G012840	Cla97C08G146520	Watermelon (97103) v2	cmawmbB037
CmaCh09G012840	Bhi04G001759	Wax gourd	cmawgoB0016
CmaCh09G012840	CsGy6G002620	Cucumber (Gy14) v2	cgybcmaB700
CmaCh09G012840	Carg24107	Silver-seed gourd	carcmaB0953

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G012840	Melon (DHL92) v3.5.1	cmameB010
CmaCh09G012840	Cucurbita pepo (Zucchini)	cmacpeB062