Cucsa.365680 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.365680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transcription factor, putative
Location	scaffold03611 : 3554548 .. 3554873 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGCTAAAACGCCAGAGTCGACGGATAAAAATGGCTGCATACTCTTCCATGGCTCGGGTTGCAGGGCGAAGGCGAGCTTGGGCTAGAGCCCTTCTCTTCAGGCTCCATACGCGACGCAGACACAAGACTCTAATGAGGAGAAAAAGAAGACCCTCGACTAGCTCTGATGACATGGTGGGTAAGCTCCGACGCCTGCTCCCCGGTGGTGAGACCATGGACGTGTGCACGTTGTTGGAGGAAACTGCGAATTACATCCATTGCTTGTCCACGCAGGTTAAGGTGATGAAAGCCATATCTAATCATCACTTGTCAAAGGTCAATTGA

mRNA sequence

ATCAGCTAAAACGCCAGAGTCGACGGATAAAAATGGCTGCATACTCTTCCATGGCTCGGGTTGCAGGGCGAAGGCGAGCTTGGGCTAGAGCCCTTCTCTTCAGGCTCCATACGCGACGCAGACACAAGACTCTAATGAGGAGAAAAAGAAGACCCTCGACTAGCTCTGATGACATGGTGGGTAAGCTCCGACGCCTGCTCCCCGGTGGTGAGACCATGGACGTGTGCACGTTGTTGGAGGAAACTGCGAATTACATCCATTGCTTGTCCACGCAGGTTAAGGTGATGAAAGCCATATCTAATCATCACTTGTCAAAGGTCAATTGA

Coding sequence (CDS)

ATCAGCTAAAACGCCAGAGTCGACGGATAAAAATGGCTGCATACTCTTCCATGGCTCGGGTTGCAGGGCGAAGGCGAGCTTGGGCTAGAGCCCTTCTCTTCAGGCTCCATACGCGACGCAGACACAAGACTCTAATGAGGAGAAAAAGAAGACCCTCGACTAGCTCTGATGACATGGTGGGTAAGCTCCGACGCCTGCTCCCCGGTGGTGAGACCATGGACGTGTGCACGTTGTTGGAGGAAACTGCGAATTACATCCATTGCTTGTCCACGCAGGTTAAGGTGATGAAAGCCATATCTAATCATCACTTGTCAAAGGTCAATTGA

Protein sequence

QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN*

Homology

[Close]

BLAST of Cucsa.365680 vs. Swiss-Prot
Match: IBH1_ARATH (Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 7   RRIKMAAYSSMARVAG-RRRAWARALLFRLH---------TRRRHKTLMRRKRRPSTSS- 66
           R+IK AAY SMAR AG   R W+RALL R           +RR+ K   +R+R    +  
Sbjct: 46  RKIKKAAYVSMARAAGGSSRLWSRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRAPV 105

Query: 67  -DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI 99
            ++   +LR L+PGG  M+   L+EETA+YI CLS QVKVM+ +
Sbjct: 106 VEEAAERLRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCL 149

[Close]

BLAST of Cucsa.365680 vs. Swiss-Prot
Match: IBH1_ORYSJ (Transcription factor IBH1 OS=Oryza sativa subsp. japonica GN=IBH1 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-08
Identity = 49/134 (36.57%), Postives = 67/134 (50.00%), Query Frame = 1


Query: 4   RQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRR-----KRR------PS 63
           R++R I+ AAYSSMAR A  RRAW+RALL ++   RR +TLMRR     +RR      PS
Sbjct: 63  RRTRTIRRAAYSSMARAASPRRAWSRALLGQVRA-RRSRTLMRRAAVLVRRRVVAAPAPS 122

Query: 64  TSSDDMV--------GKLRRLLP--------------------GGETMDVCTLLEETANY 99
            +S   V            R +P                    GG  M+  +LLEETA+Y
Sbjct: 123 PASARGVRIIAAGETSAAARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADY 182

[Close]

BLAST of Cucsa.365680 vs. Swiss-Prot
Match: IBH1_ORYSI (Transcription factor IBH1 OS=Oryza sativa subsp. indica GN=IBH1 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-08
Identity = 46/134 (34.33%), Postives = 64/134 (47.76%), Query Frame = 1


Query: 4   RQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRR-----KRRPSTSSDDM 63
           R++R I+ AAYSSMAR A  RRAW+RALL +    RR +TLMRR     +RR   +    
Sbjct: 63  RRTRTIRRAAYSSMARAASPRRAWSRALLGQARA-RRSRTLMRRAAVLVRRRVVAAPAPS 122

Query: 64  VGKLR--RLLPGGET--------------------------------MDVCTLLEETANY 99
               R  R++  GET                                M+  +LLEETA+Y
Sbjct: 123 PASARGVRIIAAGETSAAARAVPPPPRQQGEPPRADALRRLVPGGAGMEYSSLLEETADY 182

[Close]

BLAST of Cucsa.365680 vs. TrEMBL
Match: A0A0A0KDQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020740 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.2e-52
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVG 60
           QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTR RHKTLMRRKRRPSTSSDDMVG
Sbjct: 34  QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRPRHKTLMRRKRRPSTSSDDMVG 93

Query: 61  KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN 108
           KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
Sbjct: 94  KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN 140

[Close]

BLAST of Cucsa.365680 vs. TrEMBL
Match: A5AK99_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033284 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRR-RHKTLMRR----KRRPSTSS 60
           +++++SRRIKMAAYSSMA   G RRAW+RA++FRL +R  RH  + RR    K++PS   
Sbjct: 40  EVRQRSRRIKMAAYSSMACTVGSRRAWSRAIIFRLQSRAGRHGRMRRRCLGVKKKPSREM 99

Query: 61  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISN 101
                +LR L+PGGE +D C LLEETA+YI CLS+QV++MK+I++
Sbjct: 100 SQ-ADRLRDLVPGGEALDFCNLLEETAHYIKCLSSQVEIMKSIAD 143

[Close]

BLAST of Cucsa.365680 vs. TrEMBL
Match: A0A067L347_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23828 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 53/114 (46.49%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMR------RKRRPSTS 60
           +++R+SRRIK+AAYSSMAR  G RRAW+RA L ++  R R + +++      +K++  T 
Sbjct: 35  EIRRRSRRIKIAAYSSMARAVGSRRAWSRAFLLKVRNRARFRGILKNRKMGLKKKKRVTK 94

Query: 61  SDDMVGK-------LRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNH 102
           S++ V +       LR+L+PGG  MD+C LLEETA+Y+ CL TQV+VM+ I +H
Sbjct: 95  SNNKVTREISKTDMLRKLVPGGAAMDICGLLEETAHYMECLQTQVEVMQNIVDH 148

[Close]

BLAST of Cucsa.365680 vs. TrEMBL
Match: M5Y5I2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012353mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 55/116 (47.41%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 2   LKRQSRRIKMAAYSSMARVAGRRRAWARALLFRL------HTRRRHKTLMRRKRRPSTSS 61
           ++++ +RIK+AAY SMA   G R  W+RALLF+L      H +++   ++RRK + ++ S
Sbjct: 59  IQKRRQRIKIAAYLSMAHAVGPRMNWSRALLFKLRNRACRHRKKKRIVVIRRKTKKASRS 118

Query: 62  D------DMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK 106
                  D   KLRRL+PG ++MD+C+LLEETA+YI CLSTQ+KVM+A+++ HLSK
Sbjct: 119 SQGSVPVDQAKKLRRLVPGAKSMDLCSLLEETAHYITCLSTQIKVMQALAD-HLSK 173

[Close]

BLAST of Cucsa.365680 vs. TrEMBL
Match: A0A059AW60_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00442 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 2   LKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTR---RRHKTLMRRK--RRPSTSSD 61
           ++++++RIK+AAYSSMARV G RRAW+RALL +L +R   RRH    RR   +R    S 
Sbjct: 44  IRKRAQRIKIAAYSSMARVTGSRRAWSRALLAKLRSRAKRRRHLQNQRRLGLKRKRAGSR 103

Query: 62  DMV-------GKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHH 103
           +MV        +LRRL+PGG++MD+C LLEET+++I CL+ QVKVM++I++ +
Sbjct: 104 NMVLNEVSRANELRRLVPGGKSMDLCNLLEETSHFIQCLTAQVKVMQSIADQY 156

[Close]

BLAST of Cucsa.365680 vs. TAIR10
Match: AT2G43060.1 (AT2G43060.1 ILI1 binding bHLH 1)

HSP 1 Score: 73.6 bits (179), Expect = 8.6e-14
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 7   RRIKMAAYSSMARVAG-RRRAWARALLFRLH---------TRRRHKTLMRRKRRPSTSS- 66
           R+IK AAY SMAR AG   R W+RALL R           +RR+ K   +R+R    +  
Sbjct: 46  RKIKKAAYVSMARAAGGSSRLWSRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRAPV 105

Query: 67  -DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI 99
            ++   +LR L+PGG  M+   L+EETA+YI CLS QVKVM+ +
Sbjct: 106 VEEAAERLRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCL 149

[Close]

BLAST of Cucsa.365680 vs. NCBI nr
Match: gi|778721990|ref|XP_011658387.1| (PREDICTED: transcription factor IBH1 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 7.5e-52
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVG 60
           QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTR RHKTLMRRKRRPSTSSDDMVG
Sbjct: 46  QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRPRHKTLMRRKRRPSTSSDDMVG 105

Query: 61  KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN 108
           KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
Sbjct: 106 KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN 152

[Close]

BLAST of Cucsa.365680 vs. NCBI nr
Match: gi|700190707|gb|KGN45911.1| (hypothetical protein Csa_6G020740 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 7.5e-52
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVG 60
           QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTR RHKTLMRRKRRPSTSSDDMVG
Sbjct: 34  QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRPRHKTLMRRKRRPSTSSDDMVG 93

Query: 61  KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN 108
           KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
Sbjct: 94  KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN 140

[Close]

BLAST of Cucsa.365680 vs. NCBI nr
Match: gi|659128727|ref|XP_008464343.1| (PREDICTED: transcription factor IBH1 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-44
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVG 60
           QLKRQS+RIKM AYSSMARVAG RRAWARALLF+L TR RH+TLMRRKRRPSTS DD VG
Sbjct: 46  QLKRQSQRIKMVAYSSMARVAGPRRAWARALLFKLQTRPRHRTLMRRKRRPSTSPDDQVG 105

Query: 61  KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN 108
           KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAIS+ HLS  N
Sbjct: 106 KLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISDQHLSTPN 152

[Close]

BLAST of Cucsa.365680 vs. NCBI nr
Match: gi|147787258|emb|CAN60334.1| (hypothetical protein VITISV_033284 [Vitis vinifera])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRR-RHKTLMRR----KRRPSTSS 60
           +++++SRRIKMAAYSSMA   G RRAW+RA++FRL +R  RH  + RR    K++PS   
Sbjct: 40  EVRQRSRRIKMAAYSSMACTVGSRRAWSRAIIFRLQSRAGRHGRMRRRCLGVKKKPSREM 99

Query: 61  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISN 101
                +LR L+PGGE +D C LLEETA+YI CLS+QV++MK+I++
Sbjct: 100 SQ-ADRLRDLVPGGEALDFCNLLEETAHYIKCLSSQVEIMKSIAD 143

[Close]

BLAST of Cucsa.365680 vs. NCBI nr
Match: gi|359477992|ref|XP_003632050.1| (PREDICTED: transcription factor IBH1 [Vitis vinifera])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRR-RHKTLMRR----KRRPSTSS 60
           +++++SRRIKMAAYSSMA   G RRAW+RA++FRL +R  RH  + RR    K++PS   
Sbjct: 40  EVRQRSRRIKMAAYSSMACTVGSRRAWSRAIIFRLQSRAGRHGRMRRRCLGVKKKPSREM 99

Query: 61  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISN 101
                +LR L+PGGE +D C LLEETA+YI CLS+QV++MK+I++
Sbjct: 100 SQ-ADRLRDLVPGGEALDFCNLLEETAHYIKCLSSQVEIMKSIAD 143

The following BLAST results are available for this feature:

BLAST of Cucsa.365680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IBH1_ARATH	1.5e-12	44.23	Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1	[more]
IBH1_ORYSJ	2.3e-08	36.57	Transcription factor IBH1 OS=Oryza sativa subsp. japonica GN=IBH1 PE=1 SV=2	[more]
IBH1_ORYSI	5.1e-08	34.33	Transcription factor IBH1 OS=Oryza sativa subsp. indica GN=IBH1 PE=3 SV=1	[more]

BLAST of Cucsa.365680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ3_CUCSA	5.2e-52	99.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020740 PE=4 SV=1	[more]
A5AK99_VITVI	1.1e-20	53.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033284 PE=4 SV=1	[more]
A0A067L347_JATCU	1.2e-19	46.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23828 PE=4 SV=1	[more]
M5Y5I2_PRUPE	2.0e-19	47.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012353mg PE=4 SV=1	[more]
A0A059AW60_EUCGR	2.0e-19	49.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00442 PE=4 SV=1	[more]

BLAST of Cucsa.365680 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43060.1	8.6e-14	44.23	ILI1 binding bHLH 1	[more]

BLAST of Cucsa.365680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778721990\|ref\|XP_011658387.1\|	7.5e-52	99.07	PREDICTED: transcription factor IBH1 [Cucumis sativus]	[more]
gi\|700190707\|gb\|KGN45911.1\|	7.5e-52	99.07	hypothetical protein Csa_6G020740 [Cucumis sativus]	[more]
gi\|659128727\|ref\|XP_008464343.1\|	2.0e-44	87.85	PREDICTED: transcription factor IBH1 [Cucumis melo]	[more]
gi\|147787258\|emb\|CAN60334.1\|	1.5e-20	53.33	hypothetical protein VITISV_033284 [Vitis vinifera]	[more]
gi\|359477992\|ref\|XP_003632050.1\|	1.5e-20	53.33	PREDICTED: transcription factor IBH1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.365680.1	Cucsa.365680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 37..98 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 37..97 score: 3.9
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 1..100 score: 1.0
None	No IPR available	PANTHER	PTHR33124:SF3	EXPRESSED PROTEIN	coord: 1..100 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.365680	Cla002034	Watermelon (97103) v1	cgywmB661
Cucsa.365680	Csa6G020740	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.365680	MELO3C026134	Melon (DHL92) v3.5.1	cgymeB590
Cucsa.365680	ClCG08G003780	Watermelon (Charleston Gray)	cgywcgB628
Cucsa.365680	CSPI06G02770	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.365680	Lsi08G003170	Bottle gourd (USVL1VR-Ls)	cgylsiB592
Cucsa.365680	MELO3C026134.2	Melon (DHL92) v3.6.1	cgymedB588
Cucsa.365680	CsaV3_6G003020	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.365680	Bhi04G001661	Wax gourd	cgywgoB737

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.365680	Watermelon (97103) v2	cgywmbB633
Cucsa.365680	Melon (DHL92) v3.5.1	cgymeB592
Cucsa.365680	Watermelon (97103) v1	cgywmB656
Cucsa.365680	Watermelon (97103) v1	cgywmB657