Cucsa.363450 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.363450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cox19-like CHCH family protein
Location	scaffold03611 : 1003196 .. 1004102 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACTAAATTAAGCACAAATATACAAACCCTAATCTATATGAAAAAGAAGAGAAGAAATTCTATAATAAATCGCGAACTTTGAGCAGTTCAAACTTATTACGCTAAGAAGTTTGAATTTCGTATAAAATTTGTGTCGAACCTGAAGGAAAAAAAaTGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGATGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGTTCTTCTTTTTGGCGGTTCTGTTCGTCGTCTTCTACCTTTTTACGTTCTGCTAAAACCCTAAGCCCTAAAATGTAAATTGATGTTTATTAACTTCATCCCTATAATTTTCAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGGTATACTGTTCATCTCTCACTGACCATCGTTTTCACCAATTCGATCATTTCTTCTTGTTCTGAATTCTAATTTTGTTCATAGGTTCATCTTTGAATTATTTGTGGTTGCCAAGATCTCTTTCTGTTTCTTACCAATTTGAAATGTTAATGTCTATATTGTGCAATTTTTTAATTTTTCATATAAAATGACTGTCCTAATCCATTTCCTCGCTGCTAATGGTTTGTCTAGTAGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGAAGATTATTCTGCAAAGGTGCATAATGTAACAAATAATATCTAAGATTTTGTTTTATCTTGTTTAGATGTATTTTGTAACATCTATAAGGTTGACTGTTCTTCCAAGTCTTTGCCATTATGTAGAGATTATTTCAGATTGAACCTTCCATCAACTAAAAGTTTTGTCAATTACCGTTTAACTAAGCC

mRNA sequence

ACACTAAATTAAGCACAAATATACAAACCCTAATCTATATGAAAAAGAAGAGAAGAAATTCTATAATAAATCGCGAACTTTGAGCAGTTCAAACTTATTACGCTAAGAAGTTTGAATTTCGTATAAAATTTGTGTCGAACCTGAAGGAAAAAAAATGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGATGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGAAGATTATTCTGCAAAGGTGCATAATGTAACAAATAATATCTAAGATTTTGTTTTATCTTGTTTAGATGTATTTTGTAACATCTATAAGGTTGACTGTTCTTCCAAGTCTTTGCCATTATGTAGAGATTATTTCAGATTGAACCTTCCATCAACTAAAAGTTTTGTCAATTACCGTTTAACTAAGCC

Coding sequence (CDS)

aTGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGATGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGA

Protein sequence

MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSCSERRKSGQRK*

Homology

[Close]

BLAST of Cucsa.363450 vs. TrEMBL
Match: A0A0A0KEH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Cucsa.363450 vs. TrEMBL
Match: A0A0D2VNS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G181700 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-21
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 4  PPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSC 63
          PP+SP  Q  LH+ DA D+DENVKQL ECS+ YLSLQDCLIK+NRNWKSCQ EVQALK+C
Sbjct: 11 PPVSPPQQAALHQDDAADDDENVKQLKECSALYLSLQDCLIKSNRNWKSCQMEVQALKAC 70

Query: 64 SERRK 69
          +ERRK
Sbjct: 71 NERRK 75

[Close]

BLAST of Cucsa.363450 vs. TrEMBL
Match: A0A067KYJ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02061 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-21
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 11 QPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSCSERRKSG 70
          QPPLH+SDADD+DENVKQL ECSS YLSLQDCLI  NRNWKSCQ EVQALK+C+E+RK+ 
Sbjct: 8  QPPLHQSDADDDDENVKQLKECSSLYLSLQDCLIDNNRNWKSCQKEVQALKACNEKRKND 67

Query: 71 QRK 74
          + K
Sbjct: 68 RGK 70

[Close]

BLAST of Cucsa.363450 vs. TrEMBL
Match: B9RSV4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678870 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-21
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 5  PISPENQP--------PLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAE 64
          PI P++QP        PLHRSDADD+DENVKQL ECSS YLSLQDCL+++NRNWKSCQ E
Sbjct: 4  PIEPKHQPDPSSSPPPPLHRSDADDDDENVKQLRECSSLYLSLQDCLVESNRNWKSCQKE 63

Query: 65 VQALKSCSERRK 69
          VQALK+C+E R+
Sbjct: 64 VQALKACNEMRR 75

[Close]

BLAST of Cucsa.363450 vs. TrEMBL
Match: A0A0K9RLF9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_058630 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-21
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 4  PPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSC 63
          P  SP+   P+H+SDAD EDENVKQL +CSS YLSLQDCLIKT+RNWKSCQ EVQALK+C
Sbjct: 21 PLPSPQPPHPVHQSDADKEDENVKQLGDCSSLYLSLQDCLIKTDRNWKSCQKEVQALKTC 80

Query: 64 SERRKSGQ 72
          SE RK G+
Sbjct: 81 SESRKKGK 88

[Close]

BLAST of Cucsa.363450 vs. TAIR10
Match: AT5G18920.1 (AT5G18920.1 Cox19-like CHCH family protein)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-20
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1


Query: 12 PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSCSERR 68
          PP H+ DADD+DENVKQL ECSS YLSLQDCL+ +NR+WKSCQ  VQALK C ERR
Sbjct: 19 PPNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQKHVQALKECHERR 74

[Close]

BLAST of Cucsa.363450 vs. NCBI nr
Match: gi|449471638|ref|XP_004153368.1| (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Cucsa.363450 vs. NCBI nr
Match: gi|659117302|ref|XP_008458528.1| (PREDICTED: uncharacterized protein LOC103497907 isoform X2 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 7.5e-35
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 74
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Cucsa.363450 vs. NCBI nr
Match: gi|778710896|ref|XP_011656645.1| (PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 6.3e-34
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA-EVQA 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA EVQA
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAVEVQA 60

Query: 61 LKSCSERRKSGQRK 74
          LKSCSERRKSGQRK
Sbjct: 61 LKSCSERRKSGQRK 74

[Close]

BLAST of Cucsa.363450 vs. NCBI nr
Match: gi|659117296|ref|XP_008458524.1| (PREDICTED: uncharacterized protein LOC103497907 isoform X1 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ-AEVQA 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ AEVQA
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAAEVQA 60

Query: 61 LKSCSERRKSGQRK 74
          LKSCSERRKSGQRK
Sbjct: 61 LKSCSERRKSGQRK 74

[Close]

BLAST of Cucsa.363450 vs. NCBI nr
Match: gi|823248958|ref|XP_012457134.1| (PREDICTED: uncharacterized protein LOC105778088 [Gossypium raimondii])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 4  PPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSC 63
          PP+SP  Q  LH+ DA D+DENVKQL ECS+ YLSLQDCLIK+NRNWKSCQ EVQALK+C
Sbjct: 11 PPVSPPQQAALHQDDAADDDENVKQLKECSALYLSLQDCLIKSNRNWKSCQMEVQALKAC 70

Query: 64 SERRK 69
          +ERRK
Sbjct: 71 NERRK 75

The following BLAST results are available for this feature:

BLAST of Cucsa.363450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEH3_CUCSA	1.8e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062310 PE=4 SV=1	[more]
A0A0D2VNS2_GOSRA	1.1e-21	75.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G181700 PE=4 SV=1	[more]
A0A067KYJ7_JATCU	1.9e-21	77.78	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02061 PE=4 SV=1	[more]
B9RSV4_RICCO	4.3e-21	69.44	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678870 PE=4 SV=1	[more]
A0A0K9RLF9_SPIOL	5.6e-21	73.53	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_058630 PE=4 SV=1	[more]

BLAST of Cucsa.363450 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18920.1	1.5e-20	75.00	Cox19-like CHCH family protein	[more]

BLAST of Cucsa.363450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449471638\|ref\|XP_004153368.1\|	2.6e-35	100.00	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform...	[more]
gi\|659117302\|ref\|XP_008458528.1\|	7.5e-35	98.63	PREDICTED: uncharacterized protein LOC103497907 isoform X2 [Cucumis melo]	[more]
gi\|778710896\|ref\|XP_011656645.1\|	6.3e-34	98.65	PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus]	[more]
gi\|659117296\|ref\|XP_008458524.1\|	1.8e-33	97.30	PREDICTED: uncharacterized protein LOC103497907 isoform X1 [Cucumis melo]	[more]
gi\|823248958\|ref\|XP_012457134.1\|	1.6e-21	75.38	PREDICTED: uncharacterized protein LOC105778088 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.363450.1	Cucsa.363450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 27..66 score: 1.1
None	No IPR available	PANTHER	PTHR13639	FAMILY NOT NAMED	coord: 4..73 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.363450	Cla009357	Watermelon (97103) v1	cgywmB665
Cucsa.363450	Csa6G062310	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.363450	MELO3C021384	Melon (DHL92) v3.5.1	cgymeB587
Cucsa.363450	ClCG06G005620	Watermelon (Charleston Gray)	cgywcgB619
Cucsa.363450	CSPI06G05200	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.363450	CmaCh17G002870	Cucurbita maxima (Rimu)	cgycmaB0999
Cucsa.363450	CmoCh17G002760	Cucurbita moschata (Rifu)	cgycmoB1000
Cucsa.363450	Cp4.1LG12g02480	Cucurbita pepo (Zucchini)	cgycpeB0948
Cucsa.363450	MELO3C021384.2	Melon (DHL92) v3.6.1	cgymedB587
Cucsa.363450	CsaV3_6G005530	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.363450	Cla97C06G115130	Watermelon (97103) v2	cgywmbB624
Cucsa.363450	Bhi12G001579	Wax gourd	cgywgoB725
Cucsa.363450	Carg05469	Silver-seed gourd	carcgyB0085

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.363450	Melon (DHL92) v3.6.1	cgymedB593
Cucsa.363450	Silver-seed gourd	carcgyB0384
Cucsa.363450	Silver-seed gourd	carcgyB0682
Cucsa.363450	Cucumber (Chinese Long) v3	cgycucB554
Cucsa.363450	Watermelon (97103) v2	cgywmbB623
Cucsa.363450	Wax gourd	cgywgoB730
Cucsa.363450	Cucumber (Gy14) v1	cgycgyB131
Cucsa.363450	Cucurbita maxima (Rimu)	cgycmaB0991
Cucsa.363450	Cucurbita maxima (Rimu)	cgycmaB1014
Cucsa.363450	Cucurbita moschata (Rifu)	cgycmoB0993
Cucsa.363450	Cucurbita moschata (Rifu)	cgycmoB1014
Cucsa.363450	Wild cucumber (PI 183967)	cgycpiB538
Cucsa.363450	Cucumber (Chinese Long) v2	cgycuB510
Cucsa.363450	Melon (DHL92) v3.5.1	cgymeB595
Cucsa.363450	Watermelon (Charleston Gray)	cgywcgB618
Cucsa.363450	Watermelon (97103) v1	cgywmB664
Cucsa.363450	Cucurbita pepo (Zucchini)	cgycpeB0955
Cucsa.363450	Cucurbita pepo (Zucchini)	cgycpeB0966
Cucsa.363450	Bottle gourd (USVL1VR-Ls)	cgylsiB584
Cucsa.363450	Bottle gourd (USVL1VR-Ls)	cgylsiB586