ClCG06G005620 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G005620
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Cox19-like CHCH family protein
Location	CG_Chr06 : 6359181 .. 6360137 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGTCATTTTAATACGAAAAAAAGAGAGGAAATTCTAAAATAATTCGCTAACTTGAGCAGTTCAAAATTATGGTAAGAACTTTGAATTTCATGTAAAATTTGCGTCGAACCTGAACGAAGAAAAATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGTTCTTCGTGACCGTTCTGTTCATCGTCTTCTTCTTTTTTACGTTCTGCTAAAACCCTAAGCCCCGAAATGCAAATTGATGTTTATTTTCTTGATCGCCATAATTTTCAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGGTATGCCGCTCATCTCTCCGTGACCATCATTTTCCCCAATTCAATAATTTCATCTTGTTCTAAATTCTAATTTTGTTTATCGATTCATCTTTGACTGTATATATTTATCTCTTAGATTGAATCTGAATTGTTTATGGCCATCTGCCAAGATCTCTGTCTGTTTCTTACCGATTTGAAGTTTCAAAATGCCCAGATTGTGCAATTCTTTAAATTTTCATCTAAAATGACTGTTCTTCTAACTCATTACCTCGCTAATGATTCGTCTAGTAGAAGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAACCTGGCCAACGCAAGTGAAGGTTCTGGAAAGGTGCATAGTGTGCCAAATAATATCTAAGTTTTAGCTTTACTTTATTCAAAATAAATGTATTTTGAGATATCTAAAAGCTCGACTATTCTAGAAACCTGATCATTATGTCTATATTAGAATAGCTTGACAATTACTTTCTAATGCGTTGTTTGTTCAACAAATTTCGAGTTTTGGAAATTTGAATCTCCAACTTCAAGGAGAGGAATATATGGTAA

mRNA sequence

AAAAAGTCATTTTAATACGAAAAAAAGAGAGGAAATTCTAAAATAATTCGCTAACTTGAGCAGTTCAAAATTATGGTAAGAACTTTGAATTTCATGTAAAATTTGCGTCGAACCTGAACGAAGAAAAATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGTAGAAGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAACCTGGCCAACGCAAGTGAAGGTTCTGGAAAGGTGCATAGTGTGCCAAATAATATCTAAGTTTTAGCTTTACTTTATTCAAAATAAATGTATTTTGAGATATCTAAAAGCTCGACTATTCTAGAAACCTGATCATTATGTCTATATTAGAATAGCTTGACAATTACTTTCTAATGCGTTGTTTGTTCAACAAATTTCGAGTTTTGGAAATTTGAATCTCCAACTTCAAGGAGAGGAATATATGGTAA

Coding sequence (CDS)

ATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGTAGAAGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAACCTGGCCAACGCAAGTGA

Protein sequence

MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQALKSCSERRKPGQRK

Homology

[Close]

BLAST of ClCG06G005620 vs. TrEMBL
Match: A0A0A0KEH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.0e-32
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQA 60
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ  EVQA
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ-AEVQA 60

Query: 61 LKSCSERRKPGQRK 75
          LKSCSERRK GQRK
Sbjct: 61 LKSCSERRKSGQRK 73

[Close]

BLAST of ClCG06G005620 vs. TrEMBL
Match: A0A0D2VNS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G181700 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.5e-21
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 4  PPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQALKS 63
          PP+SP  Q  LH+ DA DDDENVKQL ECS+ YLSLQDCLIK+NRNWK+CQ +EVQALK+
Sbjct: 11 PPVSPPQQAALHQDDAADDDENVKQLKECSALYLSLQDCLIKSNRNWKSCQ-MEVQALKA 70

Query: 64 CSERRK 70
          C+ERRK
Sbjct: 71 CNERRK 75

[Close]

BLAST of ClCG06G005620 vs. TrEMBL
Match: A0A0B0MFV5_GOSAR (Coiled-coil-helix-coiled-coil-helix domain-containing 8 OS=Gossypium arboreum GN=F383_17362 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.2e-20
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 4  PPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQALKS 63
          PP+SP  Q  LH+ DA  DDENVKQL ECS+ YLSLQDCLIK+NRNWK+CQ +EVQALK+
Sbjct: 11 PPVSPPQQAALHQDDAAGDDENVKQLKECSALYLSLQDCLIKSNRNWKSCQ-MEVQALKA 70

Query: 64 CSERRK 70
          C+ERRK
Sbjct: 71 CNERRK 75

[Close]

BLAST of ClCG06G005620 vs. TrEMBL
Match: A0A068TRR8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025942001 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.2e-20
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 4  PPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQALKS 63
          PP SP  Q  LH+SDA++DDENVKQL ECSS YLSLQ CLIK+NRNWKACQT EVQALK 
Sbjct: 23 PPPSPSPQV-LHQSDADEDDENVKQLQECSSLYLSLQGCLIKSNRNWKACQT-EVQALKE 82

Query: 64 CSERRKPGQRK 75
          C+ERRK  ++K
Sbjct: 83 CNERRKSSKKK 91

[Close]

BLAST of ClCG06G005620 vs. TrEMBL
Match: A0A067KYJ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02061 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-19
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 11 QPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQALKSCSERRKP 70
          QPPLH+SDA+DDDENVKQL ECSS YLSLQDCLI  NRNWK+CQ  EVQALK+C+E+RK 
Sbjct: 8  QPPLHQSDADDDDENVKQLKECSSLYLSLQDCLIDNNRNWKSCQK-EVQALKACNEKRKN 67

Query: 71 GQRK 75
           + K
Sbjct: 68 DRGK 70

[Close]

BLAST of ClCG06G005620 vs. TAIR10
Match: AT5G18920.1 (AT5G18920.1 Cox19-like CHCH family protein)

HSP 1 Score: 89.7 bits (221), Expect = 8.0e-19
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 12 PPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQALKSCSERR 69
          PP H+ DA+DDDENVKQL ECSS YLSLQDCL+ +NR+WK+CQ   VQALK C ERR
Sbjct: 19 PPNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQK-HVQALKECHERR 74

[Close]

BLAST of ClCG06G005620 vs. NCBI nr
Match: gi|778710896|ref|XP_011656645.1| (PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQA 60
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ VEVQA
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAVEVQA 60

Query: 61 LKSCSERRKPGQRK 75
          LKSCSERRK GQRK
Sbjct: 61 LKSCSERRKSGQRK 74

[Close]

BLAST of ClCG06G005620 vs. NCBI nr
Match: gi|659117296|ref|XP_008458524.1| (PREDICTED: uncharacterized protein LOC103497907 isoform X1 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQA 60
          MGKPPISPEN+PPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ  EVQA
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAAEVQA 60

Query: 61 LKSCSERRKPGQRK 75
          LKSCSERRK GQRK
Sbjct: 61 LKSCSERRKSGQRK 74

[Close]

BLAST of ClCG06G005620 vs. NCBI nr
Match: gi|449471638|ref|XP_004153368.1| (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQA 60
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ  EVQA
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ-AEVQA 60

Query: 61 LKSCSERRKPGQRK 75
          LKSCSERRK GQRK
Sbjct: 61 LKSCSERRKSGQRK 73

[Close]

BLAST of ClCG06G005620 vs. NCBI nr
Match: gi|659117302|ref|XP_008458528.1| (PREDICTED: uncharacterized protein LOC103497907 isoform X2 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-31
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQA 60
          MGKPPISPEN+PPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ  EVQA
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ-AEVQA 60

Query: 61 LKSCSERRKPGQRK 75
          LKSCSERRK GQRK
Sbjct: 61 LKSCSERRKSGQRK 73

[Close]

BLAST of ClCG06G005620 vs. NCBI nr
Match: gi|823248958|ref|XP_012457134.1| (PREDICTED: uncharacterized protein LOC105778088 [Gossypium raimondii])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 4  PPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTVEVQALKS 63
          PP+SP  Q  LH+ DA DDDENVKQL ECS+ YLSLQDCLIK+NRNWK+CQ +EVQALK+
Sbjct: 11 PPVSPPQQAALHQDDAADDDENVKQLKECSALYLSLQDCLIKSNRNWKSCQ-MEVQALKA 70

Query: 64 CSERRK 70
          C+ERRK
Sbjct: 71 CNERRK 75

The following BLAST results are available for this feature:

BLAST of ClCG06G005620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEH3_CUCSA	7.0e-32	91.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G062310 PE=4 SV=1	[more]
A0A0D2VNS2_GOSRA	9.5e-21	74.24	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G181700 PE=4 SV=1	[more]
A0A0B0MFV5_GOSAR	6.2e-20	72.73	Coiled-coil-helix-coiled-coil-helix domain-containing 8 OS=Gossypium arboreum GN...	[more]
A0A068TRR8_COFCA	6.2e-20	73.24	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025942001 PE=4 SV=1	[more]
A0A067KYJ7_JATCU	2.3e-19	75.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02061 PE=4 SV=1	[more]

BLAST of ClCG06G005620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18920.1	8.0e-19	71.93	Cox19-like CHCH family protein	[more]

BLAST of ClCG06G005620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778710896\|ref\|XP_011656645.1\|	1.4e-33	93.24	PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus]	[more]
gi\|659117296\|ref\|XP_008458524.1\|	1.2e-32	90.54	PREDICTED: uncharacterized protein LOC103497907 isoform X1 [Cucumis melo]	[more]
gi\|449471638\|ref\|XP_004153368.1\|	1.0e-31	91.89	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform...	[more]
gi\|659117302\|ref\|XP_008458528.1\|	2.9e-31	90.54	PREDICTED: uncharacterized protein LOC103497907 isoform X2 [Cucumis melo]	[more]
gi\|823248958\|ref\|XP_012457134.1\|	1.4e-20	74.24	PREDICTED: uncharacterized protein LOC105778088 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G005620.1	ClCG06G005620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13639	FAMILY NOT NAMED	coord: 4..74 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G005620	Csa6G062310	Cucumber (Chinese Long) v2	cuwcgB481
ClCG06G005620	MELO3C021384	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G005620	Cla009357	Watermelon (97103) v1	wcgwmB344
ClCG06G005620	Cla97C06G115130	Watermelon (97103) v2	wcgwmbB273
ClCG06G005620	Bhi12G001579	Wax gourd	wcgwgoB492
ClCG06G005620	CSPI06G05200	Wild cucumber (PI 183967)	cpiwcgB508
ClCG06G005620	Cucsa.363450	Cucumber (Gy14) v1	cgywcgB619
ClCG06G005620	CmaCh17G002870	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G005620	CmoCh17G002760	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G005620	Cp4.1LG12g02480	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G005620	CsGy6G005140	Cucumber (Gy14) v2	cgybwcgB444
ClCG06G005620	MELO3C021384.2	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G005620	Carg05469	Silver-seed gourd	carwcgB0073
ClCG06G005620	CsaV3_6G005530	Cucumber (Chinese Long) v3	cucwcgB503

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G005620	Cucumber (Gy14) v2	cgybwcgB230
ClCG06G005620	Melon (DHL92) v3.6.1	medwcgB437
ClCG06G005620	Silver-seed gourd	carwcgB0318
ClCG06G005620	Silver-seed gourd	carwcgB0589
ClCG06G005620	Silver-seed gourd	carwcgB0808
ClCG06G005620	Cucumber (Chinese Long) v3	cucwcgB254
ClCG06G005620	Watermelon (97103) v2	wcgwmbB269
ClCG06G005620	Wax gourd	wcgwgoB521
ClCG06G005620	Watermelon (Charleston Gray)	wcgwcgB160
ClCG06G005620	Cucumber (Gy14) v1	cgywcgB453
ClCG06G005620	Cucurbita maxima (Rimu)	cmawcgB236
ClCG06G005620	Cucurbita maxima (Rimu)	cmawcgB745
ClCG06G005620	Cucurbita maxima (Rimu)	cmawcgB804
ClCG06G005620	Cucurbita moschata (Rifu)	cmowcgB222
ClCG06G005620	Cucurbita moschata (Rifu)	cmowcgB746
ClCG06G005620	Cucurbita moschata (Rifu)	cmowcgB799
ClCG06G005620	Wild cucumber (PI 183967)	cpiwcgB255
ClCG06G005620	Cucumber (Chinese Long) v2	cuwcgB247
ClCG06G005620	Melon (DHL92) v3.5.1	mewcgB442
ClCG06G005620	Watermelon (97103) v1	wcgwmB332
ClCG06G005620	Cucurbita pepo (Zucchini)	cpewcgB294
ClCG06G005620	Cucurbita pepo (Zucchini)	cpewcgB562
ClCG06G005620	Cucurbita pepo (Zucchini)	cpewcgB788
ClCG06G005620	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G005620	Bottle gourd (USVL1VR-Ls)	lsiwcgB345