Cla97C06G115130 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G115130
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Cox19-like CHCH family protein
Location	Cla97Chr06 : 6056423 .. 6056721 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGTTCTTCGTGACCGTTCTGTTCATCGTCTTCTTCTTTTTTACGTTCTGCTAAAACCCTAAGCCCCGAAATGCAAATTGATGTTTATTTTCTTGATCGCCATAATTTTCAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGGTATGCCGCTCATCTCTCCGTGA

mRNA sequence

ATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGGTATGCCGCTCATCTCTCCGTGA

Coding sequence (CDS)

ATGGGGAAACCGCCGATCTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGACGCTGAAGACGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCGTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAAGCTTGCCAGACTGGTATGCCGCTCATCTCTCCGTGA

Protein sequence

MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQTGMPLISP

Homology

[Close]

BLAST of Cla97C06G115130 vs. NCBI nr
Match: XP_004153368.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus] >XP_004153369.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus] >XP_011656648.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus] >KGN46171.1 hypothetical protein Csa_6G062310 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of Cla97C06G115130 vs. NCBI nr
Match: XP_011656645.1 (PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >XP_011656646.1 PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >XP_011656647.1 PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of Cla97C06G115130 vs. NCBI nr
Match: XP_008458528.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458529.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458530.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_016902266.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 5.3e-22
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPEN+PPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of Cla97C06G115130 vs. NCBI nr
Match: XP_022138658.1 (uncharacterized protein LOC111009761 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPP+SPENQPP HRSDA+DDDENV+QLNECSS YLSLQ+CLIKT+RNWKACQ
Sbjct: 1  MGKPPVSPENQPPFHRSDADDDDENVRQLNECSSLYLSLQECLIKTDRNWKACQ 54

[Close]

BLAST of Cla97C06G115130 vs. NCBI nr
Match: XP_022958916.1 (uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 uncharacterized protein LOC111499062 [Cucurbita maxima] >XP_023548597.1 uncharacterized protein LOC111807214 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MG PPISPENQPPLH SDA+ DDENVKQLNECSSFYLSLQ+CLIKTNRNWK CQ
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQ 54

[Close]

BLAST of Cla97C06G115130 vs. TrEMBL
Match: tr|A0A0A0KEH3|A0A0A0KEH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of Cla97C06G115130 vs. TrEMBL
Match: tr|A0A1S3C8M5|A0A1S3C8M5_CUCME (cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497907 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          MGKPPISPEN+PPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQ
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQ 54

[Close]

BLAST of Cla97C06G115130 vs. TrEMBL
Match: tr|A0A2P4HC19|A0A2P4HC19_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66347 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.6e-14
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 3  KPPISPENQ-PPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          +P I P++Q   LH+SDA+DDDENVKQLNECSS YLSLQDCLIK+NRNWK+CQ
Sbjct: 5  EPQIEPQSQKASLHQSDADDDDENVKQLNECSSLYLSLQDCLIKSNRNWKSCQ 57

[Close]

BLAST of Cla97C06G115130 vs. TrEMBL
Match: tr|B7FMS7|B7FMS7_MEDTR (Cox19-like CHCH family protein OS=Medicago truncatula OX=3880 GN=11443361 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-14
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 5   PISPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQT 56
           P++P  QPPLH+SDA+DDDENVKQL+ECSS YL +QDC++++NRNWK CQT
Sbjct: 61  PLAPA-QPPLHKSDADDDDENVKQLDECSSLYLLMQDCIVRSNRNWKECQT 110

[Close]

BLAST of Cla97C06G115130 vs. TrEMBL
Match: tr|A0A067KYJ7|A0A067KYJ7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02061 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 11 QPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          QPPLH+SDA+DDDENVKQL ECSS YLSLQDCLI  NRNWK+CQ
Sbjct: 8  QPPLHQSDADDDDENVKQLKECSSLYLSLQDCLIDNNRNWKSCQ 51

[Close]

BLAST of Cla97C06G115130 vs. TAIR10
Match: AT5G18920.1 (Cox19-like CHCH family protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-08
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 26 VKQLNECSSFYLSLQDCLIKTNRNWKACQ 55
          VKQL ECSS YLSLQDCL+ +NR+WK+CQ
Sbjct: 33 VKQLKECSSLYLSLQDCLVDSNRDWKSCQ 61

The following BLAST results are available for this feature:

BLAST of Cla97C06G115130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153368.1	1.8e-22	94.44	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform...	[more]
XP_011656645.1	1.8e-22	94.44	PREDICTED: uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >XP...	[more]
XP_008458528.1	5.3e-22	92.59	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumi...	[more]
XP_022138658.1	1.3e-20	87.04	uncharacterized protein LOC111009761 [Momordica charantia]	[more]
XP_022958916.1	8.5e-20	88.89	uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 unchar...	[more]

BLAST of Cla97C06G115130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEH3\|A0A0A0KEH3_CUCSA	1.2e-22	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1	[more]
tr\|A0A1S3C8M5\|A0A1S3C8M5_CUCME	3.5e-22	92.59	cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX...	[more]
tr\|A0A2P4HC19\|A0A2P4HC19_QUESU	4.6e-14	75.47	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66347 PE=4 SV=1	[more]
tr\|B7FMS7\|B7FMS7_MEDTR	7.8e-14	70.59	Cox19-like CHCH family protein OS=Medicago truncatula OX=3880 GN=11443361 PE=2 S...	[more]
tr\|A0A067KYJ7\|A0A067KYJ7_JATCU	7.8e-14	84.09	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02061 PE=4 SV=1	[more]

BLAST of Cla97C06G115130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G115130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18920.1	2.4e-08	75.86	Cox19-like CHCH family protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G115130.1	Cla97C06G115130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR13639	FAMILY NOT NAMED	coord: 4..57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G115130	Cla009357	Watermelon (97103) v1	wmwmbB406
Cla97C06G115130	Csa6G062310	Cucumber (Chinese Long) v2	cuwmbB473
Cla97C06G115130	MELO3C021384	Melon (DHL92) v3.5.1	mewmbB128
Cla97C06G115130	ClCG06G005620	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G115130	CSPI06G05200	Wild cucumber (PI 183967)	cpiwmbB500
Cla97C06G115130	Cucsa.363450	Cucumber (Gy14) v1	cgywmbB624
Cla97C06G115130	CmaCh17G002870	Cucurbita maxima (Rimu)	cmawmbB377
Cla97C06G115130	CmoCh17G002760	Cucurbita moschata (Rifu)	cmowmbB361
Cla97C06G115130	CsGy6G005140	Cucumber (Gy14) v2	cgybwmbB452
Cla97C06G115130	MELO3C021384.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G115130	Carg05469	Silver-seed gourd	carwmbB0070
Cla97C06G115130	CsaV3_6G005530	Cucumber (Chinese Long) v3	cucwmbB493
Cla97C06G115130	Bhi12G001579	Wax gourd	wgowmbB087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G115130	Watermelon (97103) v2	wmbwmbB137
Cla97C06G115130	Silver-seed gourd	carwmbB0334
Cla97C06G115130	Silver-seed gourd	carwmbB0632
Cla97C06G115130	Silver-seed gourd	carwmbB0868
Cla97C06G115130	Cucumber (Gy14) v2	cgybwmbB222
Cla97C06G115130	Cucumber (Gy14) v1	cgywmbB453
Cla97C06G115130	Cucurbita maxima (Rimu)	cmawmbB266
Cla97C06G115130	Cucurbita maxima (Rimu)	cmawmbB865
Cla97C06G115130	Cucurbita maxima (Rimu)	cmawmbB921
Cla97C06G115130	Cucurbita moschata (Rifu)	cmowmbB246
Cla97C06G115130	Cucurbita moschata (Rifu)	cmowmbB837
Cla97C06G115130	Cucurbita moschata (Rifu)	cmowmbB896
Cla97C06G115130	Wild cucumber (PI 183967)	cpiwmbB239
Cla97C06G115130	Cucumber (Chinese Long) v3	cucwmbB233
Cla97C06G115130	Cucumber (Chinese Long) v2	cuwmbB231
Cla97C06G115130	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G115130	Bottle gourd (USVL1VR-Ls)	lsiwmbB344
Cla97C06G115130	Melon (DHL92) v3.6.1	medwmbB442
Cla97C06G115130	Melon (DHL92) v3.5.1	mewmbB448
Cla97C06G115130	Watermelon (Charleston Gray)	wcgwmbB238
Cla97C06G115130	Watermelon (97103) v1	wmwmbB217
Cla97C06G115130	Wax gourd	wgowmbB203