Cucsa.357230 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.357230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	40S ribosomal protein S25, putative
Location	scaffold03578 : 111235 .. 115657 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCAGAACATAGGCACTGGTTAAGGAACTGCCCAAGTACCTTGCAGAGAAAAAGGCAGAGAAGGAAACGCAAGGTCAATATGATTTACTAGTTGTTGAAGTTTAGTAGAATATAAAAATTCAACATGGATACTAGATTCATGAGCCACTAATCATATTTGTCTCTCATTTCAAGAAAaTAGTTATTGGAAAAaGCTTTTAGAAAACGAGATCAGTCTCAAGGTTGGAACATGAGAGATGATCTCAACTGAAGCAGTGAGAGATTTAAAGTTGTATTTTGAAGATATATATGTCATACTTAAGAATGTCTTGTTATGTACCTCAAATGAGAAAAAATTTAATATCTATCTCTTGTATTTTGGAACAAATGTATAGAATATCTTTTGAAATTAATGAAACATTCATTCTCTAGATTCCACTAGGCAACACGAATAGTTTGTACAATGAGaAAAAAAAGCAGAAGGAAAAAAaGAAACCATATTAACCCTAATTGACCAATAGTTATTAACCGAGAAACCCTACACTCTTTAAAATATATTAGTTTTTCTCCACATCCACTCGGAGCTCCAGCCGGCAGCCACACCAACCTTCTGCCTTCGTCCTCCATCCAAATTCTCAGCCCTAAATCTACTCAACATGGTATGTTATTTCTTCAAAACCCTTCAAAATTTTCTTCTTCTTCCCTCTATTACTCTCTTTTCCCTGTCCAATCGACTAAGCCTAGTGTAGAACCCTATTCCAAGTTACCGCAATTGTTTTGGGAAATTACTTATGTTTTTTGGAAAATTAGCCACGTTATTATTTGAGTTCATCTTTCTATACACTTTTCGTCACTGGAAATCAAAGCAGAATAGATGGACTAAGTTGCGGAATCAGTTTGATTGAACTGCTGAACGGCAGTGATTTTTTAAATAAATTTTATTGGATTTGAAATATGGCTAAGTTGATAGTTCTGTGATTTTATAAATTATTATGACGGTTATCCGTTTCAATTTTCTATATGTAATTGTGCGGTCCAAGGGGAAAATGTACAAGTAATGATTTTATTGAGTGAGGAAAGGATGGGAAGTCTATATGTTGTGTGATTTATGAATTCAGTAATATAAACTTTATCCTACTTGGTATCCATATGGCAGGCACCTAAGAAGGACAAGGCTCCTCCTCCATCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAATTTGTTATGTGATGACTGTTTGTTTTGAAGTTTAGGCTCAGTTTGATAACTGCTTGATTGAAATGTTAAACTTTATAAACTGCACTTCTTTCTACCTAAAATTATTTGTTTAGTTAGCTTCTTATTCTAACATGTACTCAAAGTTCAAGGGAAAATGTGAAGACTAAACAATGTAGGGCTCGTTTCACACCTGTTTCACACCTATTTCGTTTTtGGTTTTTGAAAATTAAGCTTATAAATATTAACTTCCGCCTGTCTGAATTTCGCTATGAATTCAAATGTTTCTCCTCCATCTGCCCTTAAGAATAAAGGGTGTTTTCTGTGGATGGCTGAGCTTTGCACCGTGATTTGGGATGTTTGAGGGGAGAGGAATGATCGGGTGTGTCGCGGTAGAGAGAAGGACCAAAGTGAACCAGTGAGGTTTGGGGTTTGATTAGATTTTGTGTCCCTTTGGGCTTTAGTTTTGAAGACCTTTTTATTCCTTAGATATAAAATTTTAATTAGTTGGAATCTCTTTTTATAGGTGGGGTGCTATGATGGGTTTTCTTGCATGTCCTTGTATTCTTTCATTCTTTCTCAATAAAAGTTGTTTCTATATATAAAAAAAAaTTCCAATGTTTTCTTGTAAAAGATAAAAGTCATTGTAAAAAAATTAGGGAAAGTAAGCCCAATTTTCAAAACCAAAAACAAAAAaCCAAATTGTTATCAAAAGAGGCTGTAGTTTCTTTAAAACTTGGTTTCGGAATTTGGAATTTAGAATTCAGAATGTGTTTCTTCACTGGTTCTATGCCACGTCGTCGATAGCTCCACGGCAGTGACCAACAATGCTATGATTTAACCAAAAACAAGTTTTTTCACATCTTGATAGGAATCTGTTCATCTTTTTTCTATAGATTTACAGAGCTGTTTTGGGTGATTACATTTTTGTTTTCTTTTTAAATTAGGGTGTTTCTTCAAGAAGTGTGAAATCATAGTAAAGAAATGGCAAGTAAACTAGCTTAATTTTAAAAAACTGGAAATTAAAAACAAAACGGTCTTCAAAATATGTCTTAGTGTTTAGGAGTCGAGTGAGTATAGTACATCATTGATCCCTGTTACTGGTTAGTTTGAGGAATGCTTTTGTAAATCTTACATTCTTACCATTAATTGTATAATTTTAATTCTTATTTTGTTTATTACTCAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTGTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCTGCTATCATTTCAGACAGATTAAGGGTATGGCTTGCTTAATCCCATTTAGCTTGTACCTTCACATGTTATAAATATGCATGTTTTTTtATTGTTAAATATTGACCAAGTTTCCTAATACTCGTTTGAAATTTATGTGCCCCACTACATTTTTCGATCATTTGTTTGTTTAAAAATAAGATTTTGATCCATTAAAAATAGAAGGAATAGAAATGGGGGATGTGCGATTATAGGTTGAGCTTTCTTTCTCGGTTTTTATGAACTCCAATGTATGATAATCACATAATTTGAAATACAAGTAAAAACCTGCATTTATTATACTGGCATATATCAAACTTCATTTGTTAGATATTCATTTCATGAAACATTTTATTGTATTTTTGTATTCTATGGTTCCCAAACATGTCGGATTTGTTCTGGGATGACTCAAATTATAGGTACATAGTTTATGTAATGCCTATGAAGCACACATGCTTCATGTGTGGCAAAGAATTTGTATAAGATACCAATACTTTCAAATACTTCTCAGATGCGTATTTGATTCTCGCTTTGGCTGATGTATCTGACATGTATTTGACACATGATTCGACGTATCTATTTTTATTCTAACCTTTATTTAAAGAAAAAAGATAAGTAACTCATGCAATATTTCCCAACTCAAAACTATAACGACAAAAATAAATAAAAGACCAAATATTAGAATCATCTGATCGTCATCGTCATCGCATTTGAGTCTCCACTAGTAAAATATAATCCTCTTGAATATATTCAACAATTTAACAAATAAGTTCTTAGTTTATTTTCATACTTATCTCTAATCTTCTTCCTCTTTTCAGATCAATTTATCTCTTTTCTATTGCATTCTATTGATCATTGTACTTCCATAATCTGTCTATATCCTAGATTTTTTAAAGAAAAAaTACTGTATCTTCAAACGTATCTGTAGGGGTTTTTTAGAAATTTAGAAATTGACCTATCGACCTATCTTATCATATTTGTATCTCGTATCTATATCTGCTTCATAAATACAAATGTCCATTTGGATAATTTATCTCCTTTTTTtACTTACCTATTCCAAATGTGTCACTCACTTGAGATGCTGCGGTAGTCCAATTTTTATACTCATATCTATTCATATGGTTAACACAATTACCAAGTGTTCTCTTTCAATTTGATATCTCATTTCAGCCGGCGGTATGTTTTGTACATTATTATTTATTACTCCGTTTGAGGATAAACAAATTTTCTTCAGCCACTTAAACTCCCATTAAACCATAAGAGTAGTAAATCTTTTGTAACTGCTTCTTGTTATGAAGGATATGATATCTTCATCCAAAACAAAGTGGGTTTTCTTTGGTTAGAATGTCATTCCAACAAAACTTTAACTCGTTCTATTTGGATGGATTGTTATAGAGGGTAAATTTCTGAAATCCTGTTTGTTCGTTGACTGTTTTTATCAGATCAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCCAGAGGTTCTATTAGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACCAGAGCCACAAACACATGATAAAAAAGTTGCCATTTAAAAGAGGAACATCTTGGTTTTCTTTGCATCTCGTCAGGAACTAATATCTATGATTTTGAATATTTACATGTTTGCATTTAGAACTGGATGAATTATTTGCACTGCTTGATCGGATATATTTTTATATAATTTGAATTTTTGCTTTCATTTCTTTGAGTTTTTCTAGCAAATGAGCAAGCATGTACTATTGATTTTGGAATTAGAGATTTGTGCTCTCTACTTTGTCGATTGAAGAAAAAAaTACCGAAACATCTTATGTAAAGTGTAGTATGGCACTATTTAATGGCTCATTGGTTTATCAAATCCTTCTCCATTTTGACC

mRNA sequence

atgtcgccagaacataggcactggttaaggaactgcccaaTTTTTCTCCACATCCACTCGGAGCTCCAGCCGGCAGCCACACCAACCTTCTGCCTTCGTCCTCCATCCAAATTCTCAGCCCTAAATCTACTCAACATGGCACCTAAGAAGGACAAGGCTCCTCCTCCATCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTGTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCTGCTATCATTTCAGACAGATTAAGGATCAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCCAGAGGTTCTATTAGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACCAGAGCCACAAACACATGATAAAAAAGTTGCCATTTAAAAGAGGAACATCTTGGTTTTCTTTGCATCTCGTCAGGAACTAATATCTATGATTTTGAATATTTACATGTTTGCATTTAGAACTGGATGAATTATTTGCACTGCTTGATCGGATATATTTTTATATAATTTGAATTTTTGCTTTCATTTCTTTGAGTTTTTCTAGCAAATGAGCAAGCATGTACTATTGATTTTGGAATTAGAGATTTGTGCTCTCTACTTTGTCGATTGAAGAAAAAAATACCGAAACATCTTATGTAAAGTGTAGTATGGCACTATTTAATGGCTCATTGGTTTATCAAATCCTTCTCCATTTTGACC

Coding sequence (CDS)

ATGTCGCCAGAACATAGGCACTGGTTAAGGAACTGCCCAATTTTTCTCCACATCCACTCGGAGCTCCAGCCGGCAGCCACACCAACCTTCTGCCTTCGTCCTCCATCCAAATTCTCAGCCCTAAATCTACTCAACATGGCACCTAAGAAGGACAAGGCTCCTCCTCCATCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTGTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCTGCTATCATTTCAGACAGATTAAGGATCAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCCAGAGGTTCTATTAGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACCAGAGCCACAAACACATGA

Protein sequence

MSPEHRHWLRNCPIFLHIHSELQPAATPTFCLRPPSKFSALNLLNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKLITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT*

Homology

[Close]

BLAST of Cucsa.357230 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.1e-51
Identity = 96/108 (88.89%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL++EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 198.0 bits (502), Expect = 7.7e-50
Identity = 95/107 (88.79%), Postives = 105/107 (98.13%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 153
           ITP+I+SDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cucsa.357230 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-49
Identity = 94/108 (87.04%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL++EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.0e-49
Identity = 93/108 (86.11%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKL+SEAPK+KL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+++SDRLRI+GSLAR+AI+DLMARGSIR++SAH+SQQIYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 191.4 bits (485), Expect = 7.2e-48
Identity = 92/106 (86.79%), Postives = 101/106 (95.28%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRAT 152
           ITP+I+SDRLRINGSLAR+AI+DLM +G+IR++S HSSQQI TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Cucsa.357230 vs. TrEMBL
Match: A0A0A0KYW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571760 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.7e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Sbjct: 61  ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. TrEMBL
Match: A0A0A0KB40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-50
Identity = 99/108 (91.67%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+SE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           +TP+I+SDR+R+NGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. TrEMBL
Match: A9NKH7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SEAPK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDRLRINGSLAR+AIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. TrEMBL
Match: A0A067ESG8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033931mg PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDRLRINGSLARRAIKDLMARGSIR+ISAH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. TrEMBL
Match: V4RSB2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029626mg PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDRLRINGSLARRAIKDLMARGSIR+ISAH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 201.1 bits (510), Expect = 5.1e-52
Identity = 96/108 (88.89%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL++EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-51
Identity = 95/107 (88.79%), Postives = 105/107 (98.13%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 153
           ITP+I+SDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cucsa.357230 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 197.6 bits (501), Expect = 5.6e-51
Identity = 94/108 (87.04%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL++EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.6e-32
Identity = 66/83 (79.52%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 69  KKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKLITPAIISDRLRINGSLARRAIKD 128
           + +K SKGKQKEKVNNMVLFDQ TYDKL+SEAPKFKLITP+I+SDRLRINGSLAR+AI+D
Sbjct: 40  ESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99

Query: 129 LMARGSIRLISAHSSQQIYTRAT 152
           LM +G+IR++S HSSQQI TRAT
Sbjct: 100 LMVKGTIRMVSTHSSQQINTRAT 122

[Close]

BLAST of Cucsa.357230 vs. NCBI nr
Match: gi|449453836|ref|XP_004144662.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 9.7e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Sbjct: 61  ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. NCBI nr
Match: gi|659083221|ref|XP_008442240.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 8.2e-52
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+SEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. NCBI nr
Match: gi|470110659|ref|XP_004291591.1| (PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 208.4 bits (529), Expect = 9.1e-51
Identity = 102/108 (94.44%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+SEAPKFKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           ITP+I+SDRLRINGSLARRAIKDLMARGSIR+ISAH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+SE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           +TP+I+SDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.357230 vs. NCBI nr
Match: gi|449446287|ref|XP_004140903.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.6e-50
Identity = 99/108 (91.67%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 46  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEAPKFKL 105
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+SE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 106 ITPAIISDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 154
           +TP+I+SDR+R+NGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

The following BLAST results are available for this feature:

BLAST of Cucsa.357230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS252_ARATH	9.1e-51	88.89	40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1	[more]
RS253_ARATH	7.7e-50	88.79	40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2	[more]
RS254_ARATH	1.0e-49	87.04	40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1	[more]
RS25_SOLLC	5.0e-49	86.11	40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1	[more]
RS251_ARATH	7.2e-48	86.79	40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3	[more]

BLAST of Cucsa.357230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW1_CUCSA	6.7e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571760 PE=4 SV=1	[more]
A0A0A0KB40_CUCSA	1.8e-50	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1	[more]
A9NKH7_PICSI	2.4e-50	93.52	Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1	[more]
A0A067ESG8_CITSI	2.4e-50	93.52	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033931mg PE=4 SV=1	[more]
V4RSB2_9ROSI	2.4e-50	93.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029626mg PE=4 SV=1	[more]

BLAST of Cucsa.357230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21580.1	5.1e-52	88.89	Ribosomal protein S25 family protein	[more]
AT4G34555.1	4.3e-51	88.79	Ribosomal protein S25 family protein	[more]
AT4G39200.1	5.6e-51	87.04	Ribosomal protein S25 family protein	[more]
AT2G16360.1	2.6e-32	79.52	Ribosomal protein S25 family protein	[more]

BLAST of Cucsa.357230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453836\|ref\|XP_004144662.1\|	9.7e-53	100.00	PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus]	[more]
gi\|659083221\|ref\|XP_008442240.1\|	8.2e-52	97.22	PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]	[more]
gi\|470110659\|ref\|XP_004291591.1\|	9.1e-51	94.44	PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca]	[more]
gi\|659113490\|ref\|XP_008456601.1\|	1.2e-50	93.52	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]	[more]
gi\|449446287\|ref\|XP_004140903.1\|	2.6e-50	91.67	PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.357230.1	Cucsa.357230.1	mRNA
Cucsa.357230.2	Cucsa.357230.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 75..142 score: 4.0
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 50..143 score: 6.9
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 52..140 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.357230	Cla008069	Watermelon (97103) v1	cgywmB644
Cucsa.357230	Csa4G571760	Cucumber (Chinese Long) v2	cgycuB501
Cucsa.357230	MELO3C009036	Melon (DHL92) v3.5.1	cgymeB577
Cucsa.357230	ClCG04G000630	Watermelon (Charleston Gray)	cgywcgB608
Cucsa.357230	CSPI04G21020	Wild cucumber (PI 183967)	cgycpiB529
Cucsa.357230	CmaCh03G000920	Cucurbita maxima (Rimu)	cgycmaB0971
Cucsa.357230	CmoCh03G000980	Cucurbita moschata (Rifu)	cgycmoB0974
Cucsa.357230	Lsi01G019250	Bottle gourd (USVL1VR-Ls)	cgylsiB575
Cucsa.357230	Cp4.1LG10g11870	Cucurbita pepo (Zucchini)	cgycpeB0931
Cucsa.357230	MELO3C009036.2	Melon (DHL92) v3.6.1	cgymedB578
Cucsa.357230	CsaV3_4G031420	Cucumber (Chinese Long) v3	cgycucB543
Cucsa.357230	Cla97C04G068980	Watermelon (97103) v2	cgywmbB612

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.357230	Wax gourd	cgywgoB712
Cucsa.357230	Cucurbita maxima (Rimu)	cgycmaB0972
Cucsa.357230	Cucurbita moschata (Rifu)	cgycmoB0975
Cucsa.357230	Melon (DHL92) v3.5.1	cgymeB576
Cucsa.357230	Cucurbita pepo (Zucchini)	cgycpeB0932
Cucsa.357230	Melon (DHL92) v3.6.1	cgymedB577
Cucsa.357230	Silver-seed gourd	carcgyB0336