Cp4.1LG10g11870 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g11870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S25, putative
Location	Cp4.1LG10 : 8523773 .. 8526877 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTATTATTATTATTATTATTTAAAAAAAAAAAAAAAATTAACCCTTTGGAAACCCTAGACTTTTTTAAGTACCTGTATTTTCCTCTGGTTTGAGCTCTCCAGCCAGAGTTCTTCGCCTCTGTAATCAACGTTCTTCGTAGTCTTCCAACCAGATTCTCAGCGGCTGACCCCTCAACATGGTATGTTATTGCTTCAAAATCCTACAAATTATCTTCTTTTTCCTTGTATTACTTCATTTTTCTTACGGAATCGAGTAAGGCTGGTGTAGAATCATCTTGCGATGTGCTGCAATTTTTCTCCATTGTCATTCTGTAGTTTAAGCTATGCTAGATCTCCGGGTATTTGTCTGGTTTTGTGAAAATTTGCGGCGTAAGTCATTGTCGGAGTTCGTCGTTCTATAGTATTGTTATTTTACTCGAAAACAAAGCAGAATAGACACATTAGGTTTGCGATATGATTGTTGTGTGTTTGTGTAATGATTTAAGACGATTTATCTGTTTCAATTTTCTATTCGTAAGGTCCAATGGTAAAATTACAAGTAATGTTGTTACTTAGTGTGGAACAGTTGGGAAGTTCTAAGTGTTTATCTGATTTATGAACACGAGTGATGTAAACTTTCTCCTACTTGGTATCCATCTGGCAGGCACCGAAGAAGGATAAGGCTCCTCCTCCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAATTTGTTTTGTGAGGACTGCTTTGTTTTTAATGTTTAGGCCTGTTGATAACCATTTAATTTTTGGTTTTTGAAAATTAAGCTCATAAACTCTACTTCCACCCATAAAACAATTTGTTTTCAAATATGTTTTTCAAAATCTAAGCCAAAATTTGCAAACTAAAAAACGTAGGGCCTGTTTGATAACCATTTTATAAACATTTTACAGATGTTTTCAAAATCTAAGTCAAGTTTTGGAAGCTGAAAAAGTAGTTTTTATAAACTTGTTTTTGTTTTGGAATTTAGTTATGAATTCAAAATGTTTGTCATGAATGATGATGAAAACCTATGTAAATAAATTATGAGAAAATTAGCCCATTTTTCAAAAACTAAAAATAAAAAATCAAATGGTCATCAAACAAGATCATCTTTTTTTAAAAACTTGTTTTCTTTTTTTGGAACTTGACATCCGAGTGTTTCTTCAAGAAGTGTGAAATCATAGTAAAGAAATGGTATGGAAATAAACACAATTAAAAAAGAAACAAATAACAAAATCGTTATCAAATGAGACCATAGTCATTAGGGCTAGTGAGTATTCAGGTACATCTTTCTTTCAGGCCTGTTACTTACTTTTGGTTCTGTTATTTTATTTCTTATGTTGTTTATTGCATAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTCTTTCAGAAGTTCCAAAATACAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGGTATGGCTTGCTTAATTCCATTTAAGCTTGTATCTTCACATGTTGTAAATGCATGTCTTTGGATTGTTGAATATGGACCATGCGTCTTAATGTTTGTTTGAAATTTGTGTCCCCTACAATACTTCTCTCTTCAATCAGTTTTTTTAATAAGACCTGCGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTGTTTATAAGAGTGTTGAAACCTCTCCATAGCAGACGTGTTTCAAAAACCTTGAGGGAAAGCCCAAAGAAGATAATAGCTGCTAAACCCTAAACCATAAACCCTAAACAAAACCTTCTTTATAAGGATGTGGAAATCTCTCCCTAGTAGACACGTTTTAAAAACTTCGAGGAGAGGCCCAAAAAAGAAAGCCCAAAGAAGAAAATATCTGCTAGCTGTGAGCTTTGGCTGTTACAAGACCAATCCCCACTATCCACTAAAAACGAAATGGAAAAGAAGTTGGGGGCGGATGATTATACATTGAGCTTTTTTTTTTTTTTTGTCTGCTTTTATGAATTCCAATGTATGATATCACATCCAAGTCAAAGAACTTCTTGTACTATAATGTTATAGATCAACCTTTATTTGTTAAATCTTCATTTAATTAAGCATGTAATCATGTTTCTATCCATTTCTAAAACATAATCGGACTCATTCGAGCGATGATTTAAATAGTTGCATTGTATTACACTTTCATAATTTCTGTCTTCTGTTTTTTCATACCATATTCCAAATGTGTCGTTTATTTGAGATGTTGCACTACTCCCATGTTTAAACTACATATCCCTATGGGTAACACAATTACAAAGTGATATCTGTTGGTTTGATTTCATGTCAGCAAGGTGTTGTATTGCGTTCATTATTAATCCATGTGTATAAGCAATTATTCTTAAACCATAAGAGTTGGATATCTTTTGTAACTATCCCTTGATGTGAAGTATCTGATATCTCTAGTCAATATAAAGTGCCAAATGTCCTCCATATGACCCGTTTTTTAGACGTATTCGTTTGGTTAGCATGTCATTCATGTAATCAAACCGAACTGTGGCTGGTTCTACTTGGATGGATCGATGTTGAGATGGTAAATTGCTAAAAATCTTTCTCTGTTCGTTGTTCATTACTGTTCATCAGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGCTCTATTAGGCTCGTATCTGCTCATGCTAGCCAGCTAATATACACTAGAGCCACAAACACATGATCAAAGCGTTGGCGTTTGAAAGAGGAACATCTTGTTATTTTTGTGAGCTTCCTTTCAAGAACTATCTATGCTTTTGTATCTTCTGCATTCATGGAACGCATGCTGCTCTGAAAACTTCATGAATTATTTGCACTGCTTAATTTCTTATCTATGGAGTAACAATTTCTCTGGAACTAGAAATAGAATGGTTTCATGTTCCTTCATCGATTGGTTATTCCTTCCCGTTCTCTCTTTTTTCAATTGAGGTATCGATTAGTTTACAAGATTGAATGTCTTTGATTTTGTATTAGTACAATACCTATCCTTACTCCACGGGCACCACATTCAATTTCAAAAGT

mRNA sequence

TTTATTATTATTATTATTATTATTTAAAAAAAAAAAAAAAATTAACCCTTTGGAAACCCTAGACTTTTTTAAGTACCTGTATTTTCCTCTGGTTTGAGCTCTCCAGCCAGAGTTCTTCGCCTCTGTAATCAACGTTCTTCGTAGTCTTCCAACCAGATTCTCAGCGGCTGACCCCTCAACATGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTCTTTCAGAAGTTCCAAAATACAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGCTCTATTAGGCTCGTATCTGCTCATGCTAGCCAGCTAATATACACTAGAGCCACAAACACATGATCAAAGCGTTGGCGTTTGAAAGAGGAACATCTTGTTATTTTTGTGAGCTTCCTTTCAAGAACTATCTATGCTTTTGTATCTTCTGCATTCATGGAACGCATGCTGCTCTGAAAACTTCATGAATTATTTGCACTGCTTAATTTCTTATCTATGGAGTAACAATTTCTCTGGAACTAGAAATAGAATGGTTTCATGTTCCTTCATCGATTGGTTATTCCTTCCCGTTCTCTCTTTTTTCAATTGAGGTATCGATTAGTTTACAAGATTGAATGTCTTTGATTTTGTATTAGTACAATACCTATCCTTACTCCACGGGCACCACATTCAATTTCAAAAGT

Coding sequence (CDS)

ATGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTCTTTCAGAAGTTCCAAAATACAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGCTCTATTAGGCTCGTATCTGCTCATGCTAGCCAGCTAATATACACTAGAGCCACAAACACATGA

Protein sequence

MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

Homology

[Close]

BLAST of Cp4.1LG10g11870 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.3e-34
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFD+ +YDKLLSE PKYKLITPS+LSDRLRI+GSLAR+AI+DLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR+VSAHASQ IYTRATNT
Sbjct: 87  RGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.6e-33
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+VSAH+SQ IYTRATNT
Sbjct: 87  KGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 3.9e-32
Identity = 69/81 (85.19%), Postives = 78/81 (96.30%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLLSE PK+KLITPSILSDRLRINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATN 83
           +G+IR+VSAH+SQ IYTRAT+
Sbjct: 87  KGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cp4.1LG10g11870 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-32
Identity = 68/82 (82.93%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+V+AH+SQ IYTRATNT
Sbjct: 87  KGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 6.2e-30
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKL+SE PK+KLITPSILSDRLRINGSLAR+AI+DLM 
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMV 86

Query: 62  RGSIRLVSAHASQLIYTRAT 82
           +G+IR+VS H+SQ I TRAT
Sbjct: 87  KGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Cp4.1LG10g11870 vs. TrEMBL
Match: F6GYW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00060 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-34
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATN 83
           RGSIR+VSAHASQ IYTRATN
Sbjct: 87  RGSIRMVSAHASQQIYTRATN 107

[Close]

BLAST of Cp4.1LG10g11870 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.5e-34
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR++SAHASQ IYTRATNT
Sbjct: 87  RGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. TrEMBL
Match: A0A0C9S5M4_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12659_740 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.5e-34
Identity = 76/82 (92.68%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLAR+AIKDLMA
Sbjct: 28  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARKAIKDLMA 87

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR++SAH+SQ IYTRATNT
Sbjct: 88  RGSIRMISAHSSQQIYTRATNT 109

[Close]

BLAST of Cp4.1LG10g11870 vs. TrEMBL
Match: A0A0D6R5H1_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.5e-34
Identity = 76/82 (92.68%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLAR+AIKDLMA
Sbjct: 28  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARKAIKDLMA 87

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR++SAH+SQ IYTRATNT
Sbjct: 88  RGSIRMISAHSSQQIYTRATNT 109

[Close]

BLAST of Cp4.1LG10g11870 vs. TrEMBL
Match: A0A067JTS7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21008 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.4e-34
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLLSEVPKYKL+TPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR++SAHASQ IYTRATNT
Sbjct: 87  RGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-34
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+VSAH+SQ IYTRATNT
Sbjct: 87  KGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-33
Identity = 69/81 (85.19%), Postives = 78/81 (96.30%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLLSE PK+KLITPSILSDRLRINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATN 83
           +G+IR+VSAH+SQ IYTRAT+
Sbjct: 87  KGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cp4.1LG10g11870 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 137.9 bits (346), Expect = 2.9e-33
Identity = 68/82 (82.93%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+V+AH+SQ IYTRATNT
Sbjct: 87  KGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-29
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           K SKGKQKEKVNNMVLFDQ +YDKL+SE PK+KLITPSILSDRLRINGSLAR+AI+DLM 
Sbjct: 43  KRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMV 102

Query: 62  RGSIRLVSAHASQLIYTRAT 82
           +G+IR+VS H+SQ I TRAT
Sbjct: 103 KGTIRMVSTHSSQQINTRAT 122

[Close]

BLAST of Cp4.1LG10g11870 vs. NCBI nr
Match: gi|657997509|ref|XP_008391134.1| (PREDICTED: 40S ribosomal protein S25-like [Malus domestica])

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-34
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRL++AHASQ IYTRATNT
Sbjct: 87  RGSIRLIAAHASQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. NCBI nr
Match: gi|296080976|emb|CBI18574.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-34
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 70  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 129

Query: 62  RGSIRLVSAHASQLIYTRATN 83
           RGSIR+VSAHASQ IYTRATN
Sbjct: 130 RGSIRMVSAHASQQIYTRATN 150

[Close]

BLAST of Cp4.1LG10g11870 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-34
Identity = 76/82 (92.68%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKL+TPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR++SAH+SQ IYTRATNT
Sbjct: 87  RGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Cp4.1LG10g11870 vs. NCBI nr
Match: gi|225450236|ref|XP_002267311.1| (PREDICTED: 40S ribosomal protein S25 [Vitis vinifera])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-34
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATN 83
           RGSIR+VSAHASQ IYTRATN
Sbjct: 87  RGSIRMVSAHASQQIYTRATN 107

[Close]

BLAST of Cp4.1LG10g11870 vs. NCBI nr
Match: gi|255565659|ref|XP_002523819.1| (PREDICTED: 40S ribosomal protein S25 [Ricinus communis])

HSP 1 Score: 151.0 bits (380), Expect = 9.3e-34
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR++SAHASQ IYTRATNT
Sbjct: 87  RGSIRMISAHASQQIYTRATNT 108

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS25_SOLLC	9.3e-34	87.80	40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1	[more]
RS252_ARATH	4.6e-33	85.37	40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1	[more]
RS253_ARATH	3.9e-32	85.19	40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2	[more]
RS254_ARATH	5.1e-32	82.93	40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1	[more]
RS251_ARATH	6.2e-30	81.25	40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3	[more]

BLAST of Cp4.1LG10g11870 vs. TrEMBL


Match Name	E-value	Identity	Description
F6GYW7_VITVI	3.8e-34	96.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00060 PE=4 SV=...	[more]
B9SCV0_RICCO	6.5e-34	93.90	40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=...	[more]
A0A0C9S5M4_9SPER	6.5e-34	92.68	TSA: Wollemia nobilis Ref_Wollemi_Transcript_12659_740 transcribed RNA sequence ...	[more]
A0A0D6R5H1_ARACU	6.5e-34	92.68	Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1	[more]
A0A067JTS7_JATCU	8.4e-34	92.68	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21008 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g11870 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21580.1	2.6e-34	85.37	Ribosomal protein S25 family protein	[more]
AT4G34555.1	2.2e-33	85.19	Ribosomal protein S25 family protein	[more]
AT4G39200.1	2.9e-33	82.93	Ribosomal protein S25 family protein	[more]
AT2G16360.1	1.5e-29	80.00	Ribosomal protein S25 family protein	[more]

BLAST of Cp4.1LG10g11870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|657997509\|ref\|XP_008391134.1\|	2.4e-34	95.12	PREDICTED: 40S ribosomal protein S25-like [Malus domestica]	[more]
gi\|296080976\|emb\|CBI18574.3\|	5.4e-34	96.30	unnamed protein product [Vitis vinifera]	[more]
gi\|659113490\|ref\|XP_008456601.1\|	5.4e-34	92.68	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]	[more]
gi\|225450236\|ref\|XP_002267311.1\|	5.4e-34	96.30	PREDICTED: 40S ribosomal protein S25 [Vitis vinifera]	[more]
gi\|255565659\|ref\|XP_002523819.1\|	9.3e-34	93.90	PREDICTED: 40S ribosomal protein S25 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009662	etioplast organization
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0042793	transcription from plastid promoter
cellular_component	GO:0005840	ribosome
cellular_component	GO:0042644	chloroplast nucleoid
cellular_component	GO:0000427	plastid-encoded plastid RNA polymerase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11870.1	Cp4.1LG10g11870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 15..82 score: 1.0
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 2..83 score: 3.9
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 2..80 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g11870	Cucsa.357230	Cucumber (Gy14) v1	cgycpeB0931
Cp4.1LG10g11870	CmaCh03G000920	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g11870	CmoCh03G000980	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g11870	Cla008069	Watermelon (97103) v1	cpewmB080
Cp4.1LG10g11870	Csa4G571760	Cucumber (Chinese Long) v2	cpecuB071
Cp4.1LG10g11870	MELO3C009036	Melon (DHL92) v3.5.1	cpemeB068
Cp4.1LG10g11870	ClCG04G000630	Watermelon (Charleston Gray)	cpewcgB079
Cp4.1LG10g11870	CSPI04G21020	Wild cucumber (PI 183967)	cpecpiB066
Cp4.1LG10g11870	Lsi01G019250	Bottle gourd (USVL1VR-Ls)	cpelsiB055
Cp4.1LG10g11870	MELO3C009036.2	Melon (DHL92) v3.6.1	cpemedB087
Cp4.1LG10g11870	CsaV3_4G031420	Cucumber (Chinese Long) v3	cpecucB0076
Cp4.1LG10g11870	CsGy4G019690	Cucumber (Gy14) v2	cgybcpeB464

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g11870	Melon (DHL92) v3.6.1	cpemedB094
Cp4.1LG10g11870	Melon (DHL92) v3.6.1	cpemedB095
Cp4.1LG10g11870	Silver-seed gourd	carcpeB0398
Cp4.1LG10g11870	Wax gourd	cpewgoB0104
Cp4.1LG10g11870	Cucurbita pepo (Zucchini)	cpecpeB079
Cp4.1LG10g11870	Cucurbita pepo (Zucchini)	cpecpeB085
Cp4.1LG10g11870	Cucurbita maxima (Rimu)	cmacpeB863
Cp4.1LG10g11870	Cucurbita moschata (Rifu)	cmocpeB803
Cp4.1LG10g11870	Melon (DHL92) v3.5.1	cpemeB072