Cucsa.356550 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.356550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03577 : 1363517 .. 1363661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCAGTATGGTGAAAGGTGCAAATTTCTCCACGCCACTCAGCAAGCACAACAACAAAAACCTAATCCCTTTGGATTTGGAGTTCCTAACAACGGTCAATCTAAAGCGGTTGCTGATTTTGGATCCAAACAAAACCAATATAAG

mRNA sequence

TTGTCAGTATGGTGAAAGGTGCAAATTTCTCCACGCCACTCAGCAAGCACAACAACAAAAACCTAATCCCTTTGGATTTGGAGTTCCTAACAACGGTCAATCTAAAGCGGTTGCTGATTTTGGATCCAAACAAAACCAATATAAG

Coding sequence (CDS)

TTGTCAGTATGGTGAAAGGTGCAAATTTCTCCACGCCACTCAGCAAGCACAACAACAAAAACCTAATCCCTTTGGATTTGGAGTTCCTAACAACGGTCAATCTAAAGCGGTTGCTGATTTTGGATCCAAACAAAACCAATATAAG

Protein sequence

CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK

Homology

[Close]

BLAST of Cucsa.356550 vs. TrEMBL
Match: A0A061GQX2_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQA---------------QQQKPNPFGFGVPNNGQSKAVADFGSKQN 49
          CQYGERCKFLH  QQ                QQQKPNPFGFGV NN QSK   DFG+KQN
Sbjct: 1  CQYGERCKFLHVIQQQPKSNAFGFGTQASSHQQQKPNPFGFGVQNNVQSKGANDFGNKQN 60

[Close]

BLAST of Cucsa.356550 vs. TrEMBL
Match: A0A061GYK8_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQA---------------QQQKPNPFGFGVPNNGQSKAVADFGSKQN 49
          CQYGERCKFLH  QQ                QQQKPNPFGFGV NN QSK   DFG+KQN
Sbjct: 1  CQYGERCKFLHVIQQQPKSNAFGFGTQASSHQQQKPNPFGFGVQNNVQSKGANDFGNKQN 60

[Close]

BLAST of Cucsa.356550 vs. TrEMBL
Match: A0A061GRV6_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 5 OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQA---------------QQQKPNPFGFGVPNNGQSKAVADFGSKQN 49
          CQYGERCKFLH  QQ                QQQKPNPFGFGV NN QSK   DFG+KQN
Sbjct: 16 CQYGERCKFLHVIQQQPKSNAFGFGTQASSHQQQKPNPFGFGVQNNVQSKGANDFGNKQN 75

[Close]

BLAST of Cucsa.356550 vs. TrEMBL
Match: A0A061GSU7_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 6 (Fragment) OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQA---------------QQQKPNPFGFGVPNNGQSKAVADFGSKQN 49
          CQYGERCKFLH  QQ                QQQKPNPFGFGV NN QSK   DFG+KQN
Sbjct: 16 CQYGERCKFLHVIQQQPKSNAFGFGTQASSHQQQKPNPFGFGVQNNVQSKGANDFGNKQN 75

[Close]

BLAST of Cucsa.356550 vs. TrEMBL
Match: A0A061GS52_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQA---------------QQQKPNPFGFGVPNNGQSKAVADFGSKQN 49
          CQYGERCKFLH  QQ                QQQKPNPFGFGV NN QSK   DFG+KQN
Sbjct: 16 CQYGERCKFLHVIQQQPKSNAFGFGTQASSHQQQKPNPFGFGVQNNVQSKGANDFGNKQN 75

[Close]

BLAST of Cucsa.356550 vs. NCBI nr
Match: gi|778664070|ref|XP_011660211.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 8.9e-21
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK 49
          CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK
Sbjct: 16 CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK 63

[Close]

BLAST of Cucsa.356550 vs. NCBI nr
Match: gi|778664073|ref|XP_011660212.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 8.9e-21
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK 49
          CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK
Sbjct: 16 CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK 63

[Close]

BLAST of Cucsa.356550 vs. NCBI nr
Match: gi|659085902|ref|XP_008443667.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 8.3e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK 49
          CQYGE CKFLHATQQA QQKPNPFGFGVPNNGQSKAVADFGSKQNQ+K
Sbjct: 16 CQYGEGCKFLHATQQAPQQKPNPFGFGVPNNGQSKAVADFGSKQNQFK 63

[Close]

BLAST of Cucsa.356550 vs. NCBI nr
Match: gi|659085904|ref|XP_008443668.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 8.3e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK 49
          CQYGE CKFLHATQQA QQKPNPFGFGVPNNGQSKAVADFGSKQNQ+K
Sbjct: 16 CQYGEGCKFLHATQQAPQQKPNPFGFGVPNNGQSKAVADFGSKQNQFK 63

[Close]

BLAST of Cucsa.356550 vs. NCBI nr
Match: gi|590582326|ref|XP_007014593.1| (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 1  CQYGERCKFLHATQQA---------------QQQKPNPFGFGVPNNGQSKAVADFGSKQN 49
          CQYGERCKFLH  QQ                QQQKPNPFGFGV NN QSK   DFG+KQN
Sbjct: 16 CQYGERCKFLHVIQQQPKSNAFGFGTQASSHQQQKPNPFGFGVQNNVQSKGANDFGNKQN 75

The following BLAST results are available for this feature:

BLAST of Cucsa.356550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061GQX2_THECC	8.9e-12	60.32	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 4 (Fragment) ...	[more]
A0A061GYK8_THECC	8.9e-12	60.32	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 3 (Fragment) ...	[more]
A0A061GRV6_THECC	8.9e-12	60.32	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 5 OS=Theobrom...	[more]
A0A061GSU7_THECC	8.9e-12	60.32	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 6 (Fragment) ...	[more]
A0A061GS52_THECC	8.9e-12	60.32	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 OS=Theobrom...	[more]

BLAST of Cucsa.356550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664070\|ref\|XP_011660211.1\|	8.9e-21	100.00	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis sat...	[more]
gi\|778664073\|ref\|XP_011660212.1\|	8.9e-21	100.00	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis sat...	[more]
gi\|659085902\|ref\|XP_008443667.1\|	8.3e-19	93.75	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis mel...	[more]
gi\|659085904\|ref\|XP_008443668.1\|	8.3e-19	93.75	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis mel...	[more]
gi\|590582326\|ref\|XP_007014593.1\|	1.3e-11	60.32	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 [Theobroma ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.356550.1	Cucsa.356550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 1..14 score: 3.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 1..11 score: 2.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 1..14 score: 9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.356550	MELO3C010035	Melon (DHL92) v3.5.1	cgymeB574
Cucsa.356550	CmaCh11G009270	Cucurbita maxima (Rimu)	cgycmaB0970
Cucsa.356550	CmoCh11G009500	Cucurbita moschata (Rifu)	cgycmoB0973
Cucsa.356550	Lsi06G006830	Bottle gourd (USVL1VR-Ls)	cgylsiB573
Cucsa.356550	MELO3C010035.2	Melon (DHL92) v3.6.1	cgymedB575
Cucsa.356550	CsaV3_1G044360	Cucumber (Chinese Long) v3	cgycucB542
Cucsa.356550	Cla97C03G061110	Watermelon (97103) v2	cgywmbB608
Cucsa.356550	Bhi02G001104	Wax gourd	cgywgoB711
Cucsa.356550	Carg22718	Silver-seed gourd	carcgyB0613

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.356550	Silver-seed gourd	carcgyB1085
Cucsa.356550	Cucurbita maxima (Rimu)	cgycmaB0969
Cucsa.356550	Cucurbita moschata (Rifu)	cgycmoB0972
Cucsa.356550	Wild cucumber (PI 183967)	cgycpiB528
Cucsa.356550	Cucumber (Chinese Long) v2	cgycuB500
Cucsa.356550	Watermelon (Charleston Gray)	cgywcgB605
Cucsa.356550	Watermelon (97103) v1	cgywmB638
Cucsa.356550	Cucurbita pepo (Zucchini)	cgycpeB0927
Cucsa.356550	Cucurbita pepo (Zucchini)	cgycpeB0928