Cucsa.353860 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.353860
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Thioredoxin
Location	scaffold03537 : 199794 .. 201489 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCCACACTTCCACTTCTTCTTCTTCTCCCTCCATTTCAAAATCACATCCCTAAAACGGAAGAAAAACAGAGAGAGTGATACACATGTCTGTTTTGGGTGCAAGCACTTCCCACATTCTCTACCCACCACTTCACCAACACCACTTTCTAACCAATGCGAAGCGCTGTAGTTTTCTCAGTACAGATTTTGGAGATCACCGGCGCAGGGAGCTCCGGATCAAGGCCGAGGCTGGCTTTTGGCCGGATTTGTCAAGACCCGCCTCGGTGGAAATGGAATCCATCGACGATTCCGATCAACTAGATCGGATTTTGATCCACGCTCAACACCTTTCTCAGCCAATTCTTATTGATTGGTTCGTATAGTTTCCTCTATCCTTTCATTCCAAGGGCCTTTTTTGTAATTTCCTCCTCTCTCTCTCTCTCTCTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTCTCTCTCTCTCTCTCTCTCTTTTATTTCATTTTCTATGGTGTAGGATTTCAAATTAGTGATTTTGGGTGATCAAAAGTATGTTTAGCAAGGATTTGTAAAATATAACATAACTATTTCAAAATGAGTTGTTAATTTAAATTAAGTGTTCTTGCATTATTGGTGAATATTATAAATTAGGTGGTATGTGATATTAATATTAAACAAATGGGGGAAAATAGGATGGCAACTTGGTGTAGGAAATGCATCTACTTGAAGCCTAAACTCGAGAAACTTGCTGCTGATTATGTTACCAAGTAATCTTCTATGCTATCTCTTTCCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTACTTCTGATATGAACACAATAATTTATGTAGTGATTAAATTTCAGAGCAAAATTCTACTATGTAGATGTGAATAAGGTCCCTCAATCTCTTGTAAAACGTGGAAACATATCTGTAAGTATAATTATCCTTTGAAGCTTCCCTTTTCAATTCTTTACTTTTCTAATGAATTTCATCTTCATTATTTATTTGTTCTTTTTTTTCTTCTTTCTCCAGAAAATGCCGACAATTCAGGTGACCACTTTTTCTTGATTTTCACTCTTACATTAATTTCTTACAAAATATATATGTATATATATATATATGAATATGAATATTTGAGAGTGGTACAGATGAGTTATTGTTCATAATTTGTTCTAAAGTTATTAATTTATTAGCTTTGGAAAGATGGAGAAATGAAAGCAGAAGTAATTGGAGGGCACAAAGCTTGGCTTGTGATTGAAGAAGTTAGAGAAATGATCCAAAAGTTTGCTTCATAATATTTTGTTCACGACTCTTCCTTTGTTCATTTATTATAATTACTTCATCTTCAACCTCCCCTTACCTGAATTGTCAAAATCTTGACACCTTTAATTTTAGGTTGTTTGCACCTAATATCAATCACATATGTATCTATCTCTTCATTGTACA

mRNA sequence

CCTTCCACACTTCCACTTCTTCTTCTTCTCCCTCCATTTCAAAATCACATCCCTAAAACGGAAGAAAAACAGAGAGAGTGATACACATGTCTGTTTTGGGTGCAAGCACTTCCCACATTCTCTACCCACCACTTCACCAACACCACTTTCTAACCAATGCGAAGCGCTGTAGTTTTCTCAGTACAGATTTTGGAGATCACCGGCGCAGGGAGCTCCGGATCAAGGCCGAGGCTGGCTTTTGGCCGGATTTGTCAAGACCCGCCTCGGTGGAAATGGAATCCATCGACGATTCCGATCAACTAGATCGGATTTTGATCCACGCTCAACACCTTTCTCAGCCAATTCTTATTGATTGGATGGCAACTTGGTGTAGGAAATGCATCTACTTGAAGCCTAAACTCGAGAAACTTGCTGCTGATTATGTTACCAAATGTGAATAAGGTCCCTCAATCTCTTGTAAAACGTGGAAACATATCTAAAATGCCGACAATTCAGCTTTGGAAAGATGGAGAAATGAAAGCAGAAGTAATTGGAGGGCACAAAGCTTGGCTTGTGATTGAAGAAGTTAGAGAAATGATCCAAAAGTTTGCTTCATAATATTTTGTTCACGACTCTTCCTTTGTTCATTTATTATAATTACTTCATCTTCAACCTCCCCTTACCTGAATTGTCAAAATCTTGACACCTTTAATTTTAGGTTGTTTGCACCTAATATCAATCACATATGTATCTATCTCTTCATTGTACA

Coding sequence (CDS)

ATGTCTGTTTTGGGTGCAAGCACTTCCCACATTCTCTACCCACCACTTCACCAACACCACTTTCTAACCAATGCGAAGCGCTGTAGTTTTCTCAGTACAGATTTTGGAGATCACCGGCGCAGGGAGCTCCGGATCAAGGCCGAGGCTGGCTTTTGGCCGGATTTGTCAAGACCCGCCTCGGTGGAAATGGAATCCATCGACGATTCCGATCAACTAGATCGGATTTTGATCCACGCTCAACACCTTTCTCAGCCAATTCTTATTGATTGGATGGCAACTTGGTGTAGGAAATGCATCTACTTGAAGCCTAAACTCGAGAAACTTGCTGCTGATTATGTTACCAAATGTGAATAA

Protein sequence

MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKCE*

Homology

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BLAST of Cucsa.353860 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-53
Identity = 99/155 (63.87%), Postives = 125/155 (80.65%), Query Frame = 1


Query: 26  KRCSFLSTDFGD------HRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 85
           K+C F  + + +      H  +E R+KA   FW ++++P ++EME I++ ++LD +L HA
Sbjct: 58  KKCGFCVSVYSNEKLGRSHMEKEWRLKA---FWSNIAQPTTLEMEPINNVEELDAVLSHA 117

Query: 86  QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM 145
           + LSQPI+I+WMA+WCRKCIYLKPKLEKLAA+Y  +AKFYYVDVNKVPQ+LVKRGNISKM
Sbjct: 118 RQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKM 177

Query: 146 PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKF 175
           PTIQLWK+ EMK EVIGGHK WLVIEEVRE+I KF
Sbjct: 178 PTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINKF 209

[Close]

BLAST of Cucsa.353860 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 92/141 (65.25%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 36  GDHRRREL---RIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMA 95
           G  RRRE     ++AEA FW D+S+P  VEME ID  ++LD  L  +    QPI+IDWMA
Sbjct: 55  GKGRRRERGDGMLRAEAYFW-DVSKP--VEMEEIDSMEKLDDALRWSVENKQPIIIDWMA 114

Query: 96  TWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKA 155
           +WCRKCIYLKP+LEK+A ++    +FY+VDVNKVPQ++VKRGNI+KMPTIQLWKDGE  A
Sbjct: 115 SWCRKCIYLKPRLEKIAGEF-PGVRFYFVDVNKVPQTVVKRGNITKMPTIQLWKDGEWAA 174

Query: 156 EVIGGHKAWLVIEEVREMIQK 174
           EVIGGHKAWLV++EVREMIQK
Sbjct: 175 EVIGGHKAWLVMDEVREMIQK 191

[Close]

BLAST of Cucsa.353860 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.0e-35
Identity = 72/135 (53.33%), Postives = 95/135 (70.37%), Query Frame = 1


Query: 39  RRRELRIKAEAGFWPDLS-RPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 98
           R R + I+ + G   +L   P SVE+  I      D+++  AQ L + ++I WMA WCRK
Sbjct: 53  RIRAVDIQKQDGGLQELDDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRK 112

Query: 99  CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 158
           CIYLKPKLEKLAA++  + +FY+VDVN VP  LV R  ++KMPTIQLW+DG+ +AEVIGG
Sbjct: 113 CIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGG 172

Query: 159 HKAWLVIEEVREMIQ 173
           HKA  V+ EVREMI+
Sbjct: 173 HKAHFVVNEVREMIE 187

[Close]

BLAST of Cucsa.353860 vs. Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 37/116 (31.90%), Postives = 66/116 (56.90%), Query Frame = 1


Query: 56  SRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTK 115
           +R A  E++ ++DS   D ++I ++    P+L+D+ A WC  C  + P +++LA +Y  K
Sbjct: 62  AREAVNEVQVVNDSSW-DELVIGSE---TPVLVDFWAPWCGPCRMIAPIIDELAKEYAGK 121

Query: 116 AKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMI 172
            K Y ++ ++ P +  K G I  +PT+  +K+GE K  VIG      + E+V + I
Sbjct: 122 IKCYKLNTDESPNTATKYG-IRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172

[Close]

BLAST of Cucsa.353860 vs. Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-08
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 85  PILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQL 144
           P+L+D+ A WC  C  + P LE+L+ +Y  K K   VDV     + VK  NI  +P + +
Sbjct: 23  PVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKY-NIRNIPALLM 82

Query: 145 WKDGEMKAEVIG 157
           +KDGE+ A+ +G
Sbjct: 83  FKDGEVVAQQVG 93

[Close]

BLAST of Cucsa.353860 vs. TrEMBL
Match: A0A0A0KZ53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.0e-97
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60
           MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS
Sbjct: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60

Query: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120
           VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY
Sbjct: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120

Query: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 176

[Close]

BLAST of Cucsa.353860 vs. TrEMBL
Match: A0A151TU66_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009843 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-59
Identity = 112/136 (82.35%), Postives = 124/136 (91.18%), Query Frame = 1


Query: 39  RRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKC 98
           +RR LR++A    WPDLSRP+ +EME I+D + LD+IL+HAQH SQPILIDWMATWCRKC
Sbjct: 56  KRRNLRVEA---MWPDLSRPSEIEMEEINDCEHLDQILLHAQHNSQPILIDWMATWCRKC 115

Query: 99  IYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGH 158
           IYLKPKLEKLAA+Y  KA+FYYVDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGGH
Sbjct: 116 IYLKPKLEKLAAEYHNKARFYYVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGGH 175

Query: 159 KAWLVIEEVREMIQKF 175
           KAWLVIEEVREMIQKF
Sbjct: 176 KAWLVIEEVREMIQKF 188

[Close]

BLAST of Cucsa.353860 vs. TrEMBL
Match: A0A0B2SMC7_GLYSO (Thioredoxin-like 3-1, chloroplastic OS=Glycine soja GN=glysoja_028429 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 122/191 (63.87%), Postives = 141/191 (73.82%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPLHQH-------------HFLTNAKRCSFL----STDFGDHRRREL 60
           MSV+GA  SH LY  ++Q              +  ++   C  +        G  +RR L
Sbjct: 1   MSVIGAY-SHFLYGEVYQKDQQCPQYLVSGRGYLFSHKSSCGSIWVGSRKSEGKIKRRNL 60

Query: 61  RIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKP 120
           R++A    WPDLSRP  +EME I DS+QLD+IL+HAQ  SQPILIDWMATWCRKCIYLKP
Sbjct: 61  RVEA---MWPDLSRPNELEMEEISDSEQLDQILVHAQQNSQPILIDWMATWCRKCIYLKP 120

Query: 121 KLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 175
           KLEKLA +Y  KAKFY+VDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV
Sbjct: 121 KLEKLAPEYHNKAKFYFVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 180

[Close]

BLAST of Cucsa.353860 vs. TrEMBL
Match: K7MYG8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G149200 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 122/191 (63.87%), Postives = 141/191 (73.82%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPLHQH-------------HFLTNAKRCSFL----STDFGDHRRREL 60
           MSV+GA  SH LY  ++Q              +  ++   C  +        G  +RR L
Sbjct: 1   MSVIGAY-SHFLYGEVYQKDQQCPQYLVSGRGYLFSHKSSCGSIWVGSRKSEGKIKRRNL 60

Query: 61  RIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKP 120
           R++A    WPDLSRP  +EME I DS+QLD+IL+HAQ  SQPILIDWMATWCRKCIYLKP
Sbjct: 61  RVEA---MWPDLSRPNELEMEEISDSEQLDQILVHAQQNSQPILIDWMATWCRKCIYLKP 120

Query: 121 KLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 175
           KLEKLA +Y  KAKFY+VDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV
Sbjct: 121 KLEKLAPEYHNKAKFYFVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 180

[Close]

BLAST of Cucsa.353860 vs. TrEMBL
Match: A0A061EYM2_THECC (WCRKC thioredoxin 1 isoform 1 OS=Theobroma cacao GN=TCM_024943 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.0e-57
Identity = 126/190 (66.32%), Postives = 141/190 (74.21%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPLHQH---HFLTNAKRCSFLSTDFG----DHR---------RRELR 60
           MSVL A+ S ILY   +Q      L N+  C  L  + G    D R         RR+ R
Sbjct: 1   MSVLAAN-SQILYREFYQRDQQQQLWNSGSCMLLQKNCGYFGFDRRNGKWKKNIARRDWR 60

Query: 61  IKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPK 120
           ++A    WPDLSRP++VEME I+D DQLD+IL+ AQ LSQPILIDWMA WCRKCIYLKPK
Sbjct: 61  VEA---LWPDLSRPSAVEMEPINDCDQLDQILLRAQELSQPILIDWMAAWCRKCIYLKPK 120

Query: 121 LEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVI 175
           LEKLAA+Y TK KFY VDVNKVPQ LVKRGNISKMPTIQ+WKDGEMK EVIGGHKAWLVI
Sbjct: 121 LEKLAAEYNTKIKFYCVDVNKVPQGLVKRGNISKMPTIQVWKDGEMKEEVIGGHKAWLVI 180

[Close]

BLAST of Cucsa.353860 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-36
Identity = 72/135 (53.33%), Postives = 95/135 (70.37%), Query Frame = 1


Query: 39  RRRELRIKAEAGFWPDLS-RPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 98
           R R + I+ + G   +L   P SVE+  I      D+++  AQ L + ++I WMA WCRK
Sbjct: 53  RIRAVDIQKQDGGLQELDDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRK 112

Query: 99  CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 158
           CIYLKPKLEKLAA++  + +FY+VDVN VP  LV R  ++KMPTIQLW+DG+ +AEVIGG
Sbjct: 113 CIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGG 172

Query: 159 HKAWLVIEEVREMIQ 173
           HKA  V+ EVREMI+
Sbjct: 173 HKAHFVVNEVREMIE 187

[Close]

BLAST of Cucsa.353860 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 144.8 bits (364), Expect = 5.0e-35
Identity = 68/118 (57.63%), Postives = 92/118 (77.97%), Query Frame = 1


Query: 26  KRCSFLSTDFGD------HRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 85
           K+C F  + + +      H  +E R+KA   FW ++++P ++EME I++ ++LD +L HA
Sbjct: 58  KKCGFCVSVYSNEKLGRSHMEKEWRLKA---FWSNIAQPTTLEMEPINNVEELDAVLSHA 117

Query: 86  QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNIS 138
           + LSQPI+I+WMA+WCRKCIYLKPKLEKLAA+Y  +AKFYYVDVNKVPQ+LVKRGNIS
Sbjct: 118 RQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNIS 172

[Close]

BLAST of Cucsa.353860 vs. TAIR10
Match: AT1G69880.1 (AT1G69880.1 thioredoxin H-type 8)

HSP 1 Score: 48.1 bits (113), Expect = 6.4e-06
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 86  ILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLW 145
           ++I++ A WC  C  L+PKLE+LAA Y T  +F  +DV+ V  S+    N+S +P I   
Sbjct: 62  LVIEFTAKWCGPCKTLEPKLEELAAKY-TDVEFVKIDVD-VLMSVWMEFNLSTLPAIVFM 121

Query: 146 KDGEMKAEVIGGHKAWLVIEEVREMIQKF 175
           K G     V+G     + ++E+   + K+
Sbjct: 122 KRGREVDMVVG-----VKVDELERKLNKY 143

[Close]

BLAST of Cucsa.353860 vs. NCBI nr
Match: gi|700199630|gb|KGN54788.1| (hypothetical protein Csa_4G496780 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60
           MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS
Sbjct: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60

Query: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120
           VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY
Sbjct: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120

Query: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 176

[Close]

BLAST of Cucsa.353860 vs. NCBI nr
Match: gi|659083001|ref|XP_008442136.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo])

HSP 1 Score: 340.5 bits (872), Expect = 1.8e-90
Identity = 165/176 (93.75%), Postives = 168/176 (95.45%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60
           M VLGAS+SHILY  LHQH FL+N KRC FL+TDFGDHRRRELRIKAEAGFWPDLSRPAS
Sbjct: 1   MYVLGASSSHILYAQLHQHQFLSNGKRCGFLNTDFGDHRRRELRIKAEAGFWPDLSRPAS 60

Query: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120
           VEMESIDDSDQLDRILIHAQ LSQPILIDWMATWCRKCIYLKPKLEKLAADYVTK KFYY
Sbjct: 61  VEMESIDDSDQLDRILIHAQQLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKVKFYY 120

Query: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 176

[Close]

BLAST of Cucsa.353860 vs. NCBI nr
Match: gi|778694930|ref|XP_004146393.2| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 20  HFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 79
           HFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA
Sbjct: 40  HFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 99

Query: 80  QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM 139
           QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM
Sbjct: 100 QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM 159

Query: 140 PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 160 PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 196

[Close]

BLAST of Cucsa.353860 vs. NCBI nr
Match: gi|1021522995|ref|XP_016204899.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis ipaensis])

HSP 1 Score: 240.7 bits (613), Expect = 1.9e-60
Identity = 130/197 (65.99%), Postives = 144/197 (73.10%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPL----------HQHHFLTNAK--RCSFLST----------DFGDH 60
           MS  G    HILY  +          HQH  L ++   R  FLS+           FG  
Sbjct: 1   MSATGLLYPHILYGEVVVYQRDQQHQHQHQCLVSSSSGRYVFLSSLKSSSGCGNASFGQR 60

Query: 61  -RRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 120
            RRR  R++A    WPDLSRP+ +EMESIDDS+QLD+IL+HAQ  SQPI+IDWMA WCRK
Sbjct: 61  IRRRNFRVEAT---WPDLSRPSVIEMESIDDSEQLDQILLHAQQNSQPIIIDWMAAWCRK 120

Query: 121 CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 175
           CIYLKPKLEKLAA+Y TK KFYYVDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGG
Sbjct: 121 CIYLKPKLEKLAAEYDTKIKFYYVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGG 180

[Close]

BLAST of Cucsa.353860 vs. NCBI nr
Match: gi|1012185877|ref|XP_015969425.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis duranensis])

HSP 1 Score: 240.4 bits (612), Expect = 2.5e-60
Identity = 130/197 (65.99%), Postives = 144/197 (73.10%), Query Frame = 1


Query: 1   MSVLGASTSHILYPPL----------HQHHFLTNAK--RCSFLST----------DFGDH 60
           MS  G    HILY  +          HQH  L ++   R  FLS+           FG  
Sbjct: 1   MSATGLLYPHILYGEVVVYQRDQQHQHQHQCLVSSSSGRYVFLSSLKSSGGCGNASFGQR 60

Query: 61  -RRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 120
            RRR LR++A    WPDLSRP+ +EMESIDDS+ LD+IL+HAQ  SQPI+IDWMA WCRK
Sbjct: 61  IRRRNLRVEAT---WPDLSRPSVIEMESIDDSEHLDQILLHAQQNSQPIIIDWMAAWCRK 120

Query: 121 CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 175
           CIYLKPKLEKLAA+Y TK KFYYVDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGG
Sbjct: 121 CIYLKPKLEKLAAEYDTKIKFYYVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGG 180

The following BLAST results are available for this feature:

BLAST of Cucsa.353860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL31_ARATH	2.9e-53	63.87	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3	[more]
TRL31_ORYSJ	1.9e-44	65.25	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774...	[more]
TRL32_ARATH	8.0e-35	53.33	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1	[more]
TRXM_PEA	2.0e-09	31.90	Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
THIO2_CORNE	6.4e-08	38.89	Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3	[more]

BLAST of Cucsa.353860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ53_CUCSA	1.0e-97	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1	[more]
A0A151TU66_CAJCA	2.5e-59	82.35	Uncharacterized protein OS=Cajanus cajan GN=KK1_009843 PE=4 SV=1	[more]
A0A0B2SMC7_GLYSO	2.1e-58	63.87	Thioredoxin-like 3-1, chloroplastic OS=Glycine soja GN=glysoja_028429 PE=4 SV=1	[more]
K7MYG8_SOYBN	2.1e-58	63.87	Uncharacterized protein OS=Glycine max GN=GLYMA_19G149200 PE=4 SV=1	[more]
A0A061EYM2_THECC	1.0e-57	66.32	WCRKC thioredoxin 1 isoform 1 OS=Theobroma cacao GN=TCM_024943 PE=4 SV=1	[more]

BLAST of Cucsa.353860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04260.1	4.5e-36	53.33	WCRKC thioredoxin 2	[more]
AT5G06690.2	5.0e-35	57.63	WCRKC thioredoxin 1	[more]
AT1G69880.1	6.4e-06	33.71	thioredoxin H-type 8	[more]

BLAST of Cucsa.353860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199630\|gb\|KGN54788.1\|	1.5e-97	100.00	hypothetical protein Csa_4G496780 [Cucumis sativus]	[more]
gi\|659083001\|ref\|XP_008442136.1\|	1.8e-90	93.75	PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo]	[more]
gi\|778694930\|ref\|XP_004146393.2\|	1.0e-85	100.00	PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus]	[more]
gi\|1021522995\|ref\|XP_016204899.1\|	1.9e-60	65.99	PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis ipaensis]	[more]
gi\|1012185877\|ref\|XP_015969425.1\|	2.5e-60	65.99	PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity
GO:0015035	protein disulfide oxidoreductase activity
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.353860.3	Cucsa.353860.3	mRNA
Cucsa.353860.2	Cucsa.353860.2	mRNA
Cucsa.353860.1	Cucsa.353860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 39..112 score: 4.8
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 68..112 score: 1.
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 62..112 score: 4.2
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 82..113 score: 7.
None	No IPR available	PANTHER	PTHR10438:SF283	THIOREDOXIN-LIKE 3-1, CHLOROPLASTIC	coord: 39..112 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.353860	Cla011663	Watermelon (97103) v1	cgywmB637
Cucsa.353860	Csa4G496780	Cucumber (Chinese Long) v2	cgycuB499
Cucsa.353860	MELO3C008932	Melon (DHL92) v3.5.1	cgymeB573
Cucsa.353860	ClCG04G002040	Watermelon (Charleston Gray)	cgywcgB604
Cucsa.353860	CSPI04G20030	Wild cucumber (PI 183967)	cgycpiB526
Cucsa.353860	Lsi01G019970	Bottle gourd (USVL1VR-Ls)	cgylsiB572
Cucsa.353860	MELO3C008932.2	Melon (DHL92) v3.6.1	cgymedB574
Cucsa.353860	CsaV3_4G030690	Cucumber (Chinese Long) v3	cgycucB541
Cucsa.353860	Cla97C04G069700	Watermelon (97103) v2	cgywmbB607

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None