Csa4G496780 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G496780
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionThioredoxin-like protein; contains IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)
LocationChr4 : 17381033 .. 17382540 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATACAAAACAAAAGAACTTTCCCTTCCACACTTCCACTTCTTCTTCTTCTCCCTCCATTTCAAAATCACATCCCTAAAACGGAAGAAAAACAGAGAGAGTGATACACATGTCTGTTTTGGGTGCAAGCACTTCCCACATTCTCTACCCACCACTTCACCAACACCACTTTCTAACCAATGCGAAGCGTTGTAGTTTTCTCAGTACAGATTTTGGAGATCACCGGCGCAGGGAGCTCCGGATCAAGGCCGAGGCTGGCTTTTGGCCGGATTTGTCAAGACCCGCCTCGGTGGAAATGGAATCCATCGACGATTCCGATCAACTAGATCGGATTTTGATCCACGCTCAACACCTTTCTCAGCCAATTCTTATTGATTGGTTCGTATAGTTTCCTCTATCCTTTCATTCCAAGGGCCTTTTTTGTAATTTCCTCCTCTCTCTCTCTCTCTCTCTCTCTTTTATTTTATTTTCTATGGTGTAGGATTTCAAATTAGTGATTTTGGGTGATTAAAAGTATGTTTAGCAAGGATTTGTAAAATATAACATAACTATTTCAAAATGAGTTGTTAATTTAAATTAAGTGTTCTTGCATTATTGGTGAATATTATAAATTAGGTGGTATGTGATATTAATATTAAACAAATGGGGGAAAATAGGATGGCAACTTGGTGTAGGAAATGCATCTACTTGAAGCCTAAACTCGAGAAACTTGCTGCTGATTATGTTACCAAGTAATCTTCTATGCTATCTCTTTCCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTACTTCTGATATGAACACAATAATTTATGTAGTGATTAAATTTCAGAGCAAAATTCTACTATGTAGATGTGAATAAGGTCCCTCAATCTCTTGTAAAACGTGGAAACATATCTGTAAGTATAATTATCCTTTGAAGCTTCCCTTTTCAATTCTTTACTTTTCTAATGAATTTCATCTTCATTATTTATTTGTTCTTTTTTTTCTTCTTTCTCCAGAAAATGCCGACAATTCAGGTGACCACTTTTTCTTGATTTTCACTCTTACATTAATTTCTTACAAAATATATATGTATATATATATATATGAATATGAATATTTGAGAGTGGTACAGATGAGTTATTGTTCATAATTTGTTCTAAAGTTATTAATTTATTAGCTTTGGAAAGATGGAGAAATGAAAGCAGAAGTAATTGGAGGGCACAAAGCTTGGCTTGTGATTGAAGAAGTTAGAGAAATGATCCAAAAGTTTGCTTCATAATATTTTGTTCACGACTCTTCCTTTGTTCATTTATTATAATTACTTCATCTTCAACCTCCCCTTACCTGAATTGTCAAAATCTTGACACCTTTAATTTTAGGTTGTTTGCACCTAATATCAATCACATATGTATCTATCTCTTCATTGTACACATTACATACAAATATTTTACCTTCTCTTCAATATAGTATTTAAAGAATGAAAAGCTGCAATAATGTGTAGGAGGAAAAGAAAAATAGTTTGGC

mRNA sequence

ATGTCTGTTTTGGGTGCAAGCACTTCCCACATTCTCTACCCACCACTTCACCAACACCACTTTCTAACCAATGCGAAGCGTTGTAGTTTTCTCAGTACAGATTTTGGAGATCACCGGCGCAGGGAGCTCCGGATCAAGGCCGAGGCTGGCTTTTGGCCGGATTTGTCAAGACCCGCCTCGGTGGAAATGGAATCCATCGACGATTCCGATCAACTAGATCGGATTTTGATCCACGCTCAACACCTTTCTCAGCCAATTCTTATTGATTGGATGGCAACTTGGTGTAGGAAATGCATCTACTTGAAGCCTAAACTCGAGAAACTTGCTGCTGATTATGTTACCAAAGCAAAATTCTACTATGTAGATGTGAATAAGGTCCCTCAATCTCTTGTAAAACGTGGAAACATATCTAAAATGCCGACAATTCAGCTTTGGAAAGATGGAGAAATGAAAGCAGAAGTAATTGGAGGGCACAAAGCTTGGCTTGTGATTGAAGAAGTTAGAGAAATGATCCAAAAGTTTGCTTCATAA

Coding sequence (CDS)

ATGTCTGTTTTGGGTGCAAGCACTTCCCACATTCTCTACCCACCACTTCACCAACACCACTTTCTAACCAATGCGAAGCGTTGTAGTTTTCTCAGTACAGATTTTGGAGATCACCGGCGCAGGGAGCTCCGGATCAAGGCCGAGGCTGGCTTTTGGCCGGATTTGTCAAGACCCGCCTCGGTGGAAATGGAATCCATCGACGATTCCGATCAACTAGATCGGATTTTGATCCACGCTCAACACCTTTCTCAGCCAATTCTTATTGATTGGATGGCAACTTGGTGTAGGAAATGCATCTACTTGAAGCCTAAACTCGAGAAACTTGCTGCTGATTATGTTACCAAAGCAAAATTCTACTATGTAGATGTGAATAAGGTCCCTCAATCTCTTGTAAAACGTGGAAACATATCTAAAATGCCGACAATTCAGCTTTGGAAAGATGGAGAAATGAAAGCAGAAGTAATTGGAGGGCACAAAGCTTGGCTTGTGATTGAAGAAGTTAGAGAAATGATCCAAAAGTTTGCTTCATAA

Protein sequence

MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS*
Homology
[Close]
BLAST of Csa4G496780 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-53
Identity = 99/155 (63.87%), Postives = 123/155 (79.35%), Query Frame = 1 

Query: 26  KRCSFLSTDFGD------HRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 85
           K+C F  + + +      H  +E R+KA   FW ++++P ++EME I++ ++LD +L HA
Sbjct: 58  KKCGFCVSVYSNEKLGRSHMEKEWRLKA---FWSNIAQPTTLEMEPINNVEELDAVLSHA 117

Query: 86  QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM 145
           + LSQPI+I+WMA+WCRKCIYLKPKLEKLAA+Y  +AKFYYVDVNKVPQ+LVKRGNISKM
Sbjct: 118 RQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKM 177

Query: 146 PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKF 175
           PTIQLWK+ EMK EVIGGHK WLVIEEVRE+I KF
Sbjct: 178 PTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINKF 209

[Close]
BLAST of Csa4G496780 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 92/141 (65.25%), Postives = 110/141 (78.01%), Query Frame = 1 

Query: 36  GDHRRREL---RIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMA 95
           G  RRRE     ++AEA FW D+S+P  VEME ID  ++LD  L  +    QPI+IDWMA
Sbjct: 55  GKGRRRERGDGMLRAEAYFW-DVSKP--VEMEEIDSMEKLDDALRWSVENKQPIIIDWMA 114

Query: 96  TWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKA 155
           +WCRKCIYLKP+LEK+A ++    +FY+VDVNKVPQ++VKRGNI+KMPTIQLWKDGE  A
Sbjct: 115 SWCRKCIYLKPRLEKIAGEF-PGVRFYFVDVNKVPQTVVKRGNITKMPTIQLWKDGEWAA 174

Query: 156 EVIGGHKAWLVIEEVREMIQK 174
           EVIGGHKAWLV++EVREMIQK
Sbjct: 175 EVIGGHKAWLVMDEVREMIQK 191

[Close]
BLAST of Csa4G496780 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.0e-35
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = 1 

Query: 39  RRRELRIKAEAGFWPDLS-RPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 98
           R R + I+ + G   +L   P SVE+  I      D+++  AQ L + ++I WMA WCRK
Sbjct: 53  RIRAVDIQKQDGGLQELDDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRK 112

Query: 99  CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 158
           CIYLKPKLEKLAA++  + +FY+VDVN VP  LV R  ++KMPTIQLW+DG+ +AEVIGG
Sbjct: 113 CIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGG 172

Query: 159 HKAWLVIEEVREMIQ 173
           HKA  V+ EVREMI+
Sbjct: 173 HKAHFVVNEVREMIE 187

[Close]
BLAST of Csa4G496780 vs. Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 37/116 (31.90%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 56  SRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTK 115
           +R A  E++ ++DS   D ++I ++    P+L+D+ A WC  C  + P +++LA +Y  K
Sbjct: 62  AREAVNEVQVVNDSSW-DELVIGSE---TPVLVDFWAPWCGPCRMIAPIIDELAKEYAGK 121

Query: 116 AKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMI 172
            K Y ++ ++ P +  K G I  +PT+  +K+GE K  VIG      + E+V + I
Sbjct: 122 IKCYKLNTDESPNTATKYG-IRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172

[Close]
BLAST of Csa4G496780 vs. Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-08
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 1 

Query: 85  PILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQL 144
           P+L+D+ A WC  C  + P LE+L+ +Y  K K   VDV     + VK  NI  +P + +
Sbjct: 23  PVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKY-NIRNIPALLM 82

Query: 145 WKDGEMKAEVIG 157
           +KDGE+ A+ +G
Sbjct: 83  FKDGEVVAQQVG 93

[Close]
BLAST of Csa4G496780 vs. TrEMBL
Match: A0A0A0KZ53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.0e-97
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60
           MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS
Sbjct: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60

Query: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120
           VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY
Sbjct: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120

Query: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 176

[Close]
BLAST of Csa4G496780 vs. TrEMBL
Match: A0A151TU66_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009843 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-59
Identity = 112/136 (82.35%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 39  RRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKC 98
           +RR LR++A    WPDLSRP+ +EME I+D + LD+IL+HAQH SQPILIDWMATWCRKC
Sbjct: 56  KRRNLRVEA---MWPDLSRPSEIEMEEINDCEHLDQILLHAQHNSQPILIDWMATWCRKC 115

Query: 99  IYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGH 158
           IYLKPKLEKLAA+Y  KA+FYYVDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGGH
Sbjct: 116 IYLKPKLEKLAAEYHNKARFYYVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGGH 175

Query: 159 KAWLVIEEVREMIQKF 175
           KAWLVIEEVREMIQKF
Sbjct: 176 KAWLVIEEVREMIQKF 188

[Close]
BLAST of Csa4G496780 vs. TrEMBL
Match: K7MYG8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G149200 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 122/191 (63.87%), Postives = 141/191 (73.82%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPLHQH-------------HFLTNAKRCSFL----STDFGDHRRREL 60
           MSV+GA  SH LY  ++Q              +  ++   C  +        G  +RR L
Sbjct: 1   MSVIGAY-SHFLYGEVYQKDQQCPQYLVSGRGYLFSHKSSCGSIWVGSRKSEGKIKRRNL 60

Query: 61  RIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKP 120
           R++A    WPDLSRP  +EME I DS+QLD+IL+HAQ  SQPILIDWMATWCRKCIYLKP
Sbjct: 61  RVEA---MWPDLSRPNELEMEEISDSEQLDQILVHAQQNSQPILIDWMATWCRKCIYLKP 120

Query: 121 KLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 175
           KLEKLA +Y  KAKFY+VDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV
Sbjct: 121 KLEKLAPEYHNKAKFYFVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 180

[Close]
BLAST of Csa4G496780 vs. TrEMBL
Match: A0A0B2SMC7_GLYSO (Thioredoxin-like 3-1, chloroplastic OS=Glycine soja GN=glysoja_028429 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 122/191 (63.87%), Postives = 141/191 (73.82%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPLHQH-------------HFLTNAKRCSFL----STDFGDHRRREL 60
           MSV+GA  SH LY  ++Q              +  ++   C  +        G  +RR L
Sbjct: 1   MSVIGAY-SHFLYGEVYQKDQQCPQYLVSGRGYLFSHKSSCGSIWVGSRKSEGKIKRRNL 60

Query: 61  RIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKP 120
           R++A    WPDLSRP  +EME I DS+QLD+IL+HAQ  SQPILIDWMATWCRKCIYLKP
Sbjct: 61  RVEA---MWPDLSRPNELEMEEISDSEQLDQILVHAQQNSQPILIDWMATWCRKCIYLKP 120

Query: 121 KLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 175
           KLEKLA +Y  KAKFY+VDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV
Sbjct: 121 KLEKLAPEYHNKAKFYFVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLV 180

[Close]
BLAST of Csa4G496780 vs. TrEMBL
Match: A0A061EYM2_THECC (WCRKC thioredoxin 1 isoform 1 OS=Theobroma cacao GN=TCM_024943 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.0e-57
Identity = 126/190 (66.32%), Postives = 141/190 (74.21%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPLHQH---HFLTNAKRCSFLSTDFG----DHR---------RRELR 60
           MSVL A+ S ILY   +Q      L N+  C  L  + G    D R         RR+ R
Sbjct: 1   MSVLAAN-SQILYREFYQRDQQQQLWNSGSCMLLQKNCGYFGFDRRNGKWKKNIARRDWR 60

Query: 61  IKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPK 120
           ++A    WPDLSRP++VEME I+D DQLD+IL+ AQ LSQPILIDWMA WCRKCIYLKPK
Sbjct: 61  VEA---LWPDLSRPSAVEMEPINDCDQLDQILLRAQELSQPILIDWMAAWCRKCIYLKPK 120

Query: 121 LEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVI 175
           LEKLAA+Y TK KFY VDVNKVPQ LVKRGNISKMPTIQ+WKDGEMK EVIGGHKAWLVI
Sbjct: 121 LEKLAAEYNTKIKFYCVDVNKVPQGLVKRGNISKMPTIQVWKDGEMKEEVIGGHKAWLVI 180

[Close]
BLAST of Csa4G496780 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-36
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = 1 

Query: 39  RRRELRIKAEAGFWPDLS-RPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 98
           R R + I+ + G   +L   P SVE+  I      D+++  AQ L + ++I WMA WCRK
Sbjct: 53  RIRAVDIQKQDGGLQELDDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRK 112

Query: 99  CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 158
           CIYLKPKLEKLAA++  + +FY+VDVN VP  LV R  ++KMPTIQLW+DG+ +AEVIGG
Sbjct: 113 CIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGG 172

Query: 159 HKAWLVIEEVREMIQ 173
           HKA  V+ EVREMI+
Sbjct: 173 HKAHFVVNEVREMIE 187

[Close]
BLAST of Csa4G496780 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 144.8 bits (364), Expect = 5.0e-35
Identity = 68/118 (57.63%), Postives = 90/118 (76.27%), Query Frame = 1 

Query: 26  KRCSFLSTDFGD------HRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 85
           K+C F  + + +      H  +E R+KA   FW ++++P ++EME I++ ++LD +L HA
Sbjct: 58  KKCGFCVSVYSNEKLGRSHMEKEWRLKA---FWSNIAQPTTLEMEPINNVEELDAVLSHA 117

Query: 86  QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNIS 138
           + LSQPI+I+WMA+WCRKCIYLKPKLEKLAA+Y  +AKFYYVDVNKVPQ+LVKRGNIS
Sbjct: 118 RQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNIS 172

[Close]
BLAST of Csa4G496780 vs. TAIR10
Match: AT1G69880.1 (AT1G69880.1 thioredoxin H-type 8)

HSP 1 Score: 48.1 bits (113), Expect = 6.4e-06
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 1 

Query: 86  ILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLW 145
           ++I++ A WC  C  L+PKLE+LAA Y T  +F  +DV+ V  S+    N+S +P I   
Sbjct: 62  LVIEFTAKWCGPCKTLEPKLEELAAKY-TDVEFVKIDVD-VLMSVWMEFNLSTLPAIVFM 121

Query: 146 KDGEMKAEVIGGHKAWLVIEEVREMIQKF 175
           K G     V+G     + ++E+   + K+
Sbjct: 122 KRGREVDMVVG-----VKVDELERKLNKY 143

[Close]
BLAST of Csa4G496780 vs. NCBI nr
Match: gi|700199630|gb|KGN54788.1| (hypothetical protein Csa_4G496780 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60
           MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS
Sbjct: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60

Query: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120
           VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY
Sbjct: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120

Query: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 176

[Close]
BLAST of Csa4G496780 vs. NCBI nr
Match: gi|659083001|ref|XP_008442136.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo])

HSP 1 Score: 340.5 bits (872), Expect = 1.8e-90
Identity = 165/176 (93.75%), Postives = 168/176 (95.45%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPLHQHHFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPAS 60
           M VLGAS+SHILY  LHQH FL+N KRC FL+TDFGDHRRRELRIKAEAGFWPDLSRPAS
Sbjct: 1   MYVLGASSSHILYAQLHQHQFLSNGKRCGFLNTDFGDHRRRELRIKAEAGFWPDLSRPAS 60

Query: 61  VEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYY 120
           VEMESIDDSDQLDRILIHAQ LSQPILIDWMATWCRKCIYLKPKLEKLAADYVTK KFYY
Sbjct: 61  VEMESIDDSDQLDRILIHAQQLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKVKFYY 120

Query: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 121 VDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 176

[Close]
BLAST of Csa4G496780 vs. NCBI nr
Match: gi|778694930|ref|XP_004146393.2| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 20  HFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 79
           HFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA
Sbjct: 40  HFLTNAKRCSFLSTDFGDHRRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHA 99

Query: 80  QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM 139
           QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM
Sbjct: 100 QHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKM 159

Query: 140 PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 177
           PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS
Sbjct: 160 PTIQLWKDGEMKAEVIGGHKAWLVIEEVREMIQKFAS 196

[Close]
BLAST of Csa4G496780 vs. NCBI nr
Match: gi|1021522995|ref|XP_016204899.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis ipaensis])

HSP 1 Score: 240.7 bits (613), Expect = 1.9e-60
Identity = 130/197 (65.99%), Postives = 144/197 (73.10%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPL----------HQHHFLTNAK--RCSFLST----------DFGDH 60
           MS  G    HILY  +          HQH  L ++   R  FLS+           FG  
Sbjct: 1   MSATGLLYPHILYGEVVVYQRDQQHQHQHQCLVSSSSGRYVFLSSLKSSSGCGNASFGQR 60

Query: 61  -RRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 120
            RRR  R++A    WPDLSRP+ +EMESIDDS+QLD+IL+HAQ  SQPI+IDWMA WCRK
Sbjct: 61  IRRRNFRVEAT---WPDLSRPSVIEMESIDDSEQLDQILLHAQQNSQPIIIDWMAAWCRK 120

Query: 121 CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 175
           CIYLKPKLEKLAA+Y TK KFYYVDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGG
Sbjct: 121 CIYLKPKLEKLAAEYDTKIKFYYVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGG 180

[Close]
BLAST of Csa4G496780 vs. NCBI nr
Match: gi|1012185877|ref|XP_015969425.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis duranensis])

HSP 1 Score: 240.4 bits (612), Expect = 2.5e-60
Identity = 130/197 (65.99%), Postives = 144/197 (73.10%), Query Frame = 1 

Query: 1   MSVLGASTSHILYPPL----------HQHHFLTNAK--RCSFLST----------DFGDH 60
           MS  G    HILY  +          HQH  L ++   R  FLS+           FG  
Sbjct: 1   MSATGLLYPHILYGEVVVYQRDQQHQHQHQCLVSSSSGRYVFLSSLKSSGGCGNASFGQR 60

Query: 61  -RRRELRIKAEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRK 120
            RRR LR++A    WPDLSRP+ +EMESIDDS+ LD+IL+HAQ  SQPI+IDWMA WCRK
Sbjct: 61  IRRRNLRVEAT---WPDLSRPSVIEMESIDDSEHLDQILLHAQQNSQPIIIDWMAAWCRK 120

Query: 121 CIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQLWKDGEMKAEVIGG 175
           CIYLKPKLEKLAA+Y TK KFYYVDVNKVPQ+LVKRGNISKMPTIQLWKDGEMKAEVIGG
Sbjct: 121 CIYLKPKLEKLAAEYDTKIKFYYVDVNKVPQTLVKRGNISKMPTIQLWKDGEMKAEVIGG 180

The following BLAST results are available for this feature:
BLAST of Csa4G496780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TRL31_ARATH2.9e-5363.87Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3[more]
TRL31_ORYSJ1.9e-4465.25Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774... [more]
TRL32_ARATH8.0e-3553.33Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1[more]
TRXM_PEA2.0e-0931.90Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1[more]
THIO2_CORNE6.4e-0838.89Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3[more]
BLAST of Csa4G496780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ53_CUCSA1.0e-97100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1[more]
A0A151TU66_CAJCA2.5e-5982.35Uncharacterized protein OS=Cajanus cajan GN=KK1_009843 PE=4 SV=1[more]
K7MYG8_SOYBN2.1e-5863.87Uncharacterized protein OS=Glycine max GN=GLYMA_19G149200 PE=4 SV=1[more]
A0A0B2SMC7_GLYSO2.1e-5863.87Thioredoxin-like 3-1, chloroplastic OS=Glycine soja GN=glysoja_028429 PE=4 SV=1[more]
A0A061EYM2_THECC1.0e-5766.32WCRKC thioredoxin 1 isoform 1 OS=Theobroma cacao GN=TCM_024943 PE=4 SV=1[more]
BLAST of Csa4G496780 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04260.14.5e-3653.33 WCRKC thioredoxin 2[more]
AT5G06690.25.0e-3557.63 WCRKC thioredoxin 1[more]
AT1G69880.16.4e-0633.71 thioredoxin H-type 8[more]
BLAST of Csa4G496780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199630|gb|KGN54788.1|1.5e-97100.00hypothetical protein Csa_4G496780 [Cucumis sativus][more]
gi|659083001|ref|XP_008442136.1|1.8e-9093.75PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo][more]
gi|778694930|ref|XP_004146393.2|1.0e-85100.00PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus][more]
gi|1021522995|ref|XP_016204899.1|1.9e-6065.99PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis ipaensis][more]
gi|1012185877|ref|XP_015969425.1|2.5e-6065.99PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005623 cell
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU110931cucumber EST collection version 3.0transcribed_cluster
CU115595cucumber EST collection version 3.0transcribed_cluster
CU123816cucumber EST collection version 3.0transcribed_cluster
CU133896cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G496780.1Csa4G496780.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU110931CU110931transcribed_cluster
CU123816CU123816transcribed_cluster
CU133896CU133896transcribed_cluster
CU115595CU115595transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 39..174
score: 2.0
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 59..171
score: 1.2
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 62..172
score: 3.59
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 82..159
score: 1.2
IPR013766Thioredoxin domainPROFILEPS51352THIOREDOXIN_2coord: 46..176
score: 10
NoneNo IPR availablePANTHERPTHR10438:SF283THIOREDOXIN-LIKE 3-1, CHLOROPLASTICcoord: 39..174
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G496780Cla011663Watermelon (97103) v1cuwmB333
Csa4G496780MELO3C008932Melon (DHL92) v3.5.1cumeB326
Csa4G496780ClCG04G002040Watermelon (Charleston Gray)cuwcgB296
Csa4G496780Lsi01G019970Bottle gourd (USVL1VR-Ls)culsiB250
Csa4G496780MELO3C008932.2Melon (DHL92) v3.6.1cumedB312
Csa4G496780Cla97C04G069700Watermelon (97103) v2cuwmbB293
Csa4G496780CSPI04G20030Wild cucumber (PI 183967)cpicuB181
Csa4G496780Cucsa.353860Cucumber (Gy14) v1cgycuB499
Csa4G496780CsGy4G019050Cucumber (Gy14) v2cgybcuB173
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G496780Watermelon (97103) v2cuwmbB303
Csa4G496780Wax gourdcuwgoB398
Csa4G496780Cucurbita maxima (Rimu)cmacuB665
Csa4G496780Watermelon (Charleston Gray)cuwcgB306
Csa4G496780Cucurbita pepo (Zucchini)cpecuB073