Cucsa.349270 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.349270
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING finger protein, putative
Location	scaffold03487 : 557350 .. 558547 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCTCCTACTTATGCTCCTCCTCCTTCTTCCTTTCCTTTTAATCTCTTCTCTCCAAGTTTTCCTCTCATGAGTCATTTTGAGGGTTTCCATAATAATAACAATAATTCTCATCATCATCAACATCATCTCTTTCCTCTTCAAGATCATGATTCAACAACCAACCAAAACTCTTCTACTTCTAAGGATCTAACTCTTCATGACTCCGCCGTCGTCGCCGATAAGAGTTGGCTTCGTCTTAGCATCGGTGCTACCACCCCTGACGTCGTCGTCCACAACCATCACCACCACCATCACCAACAACCACCAGGGTTTCGCTTTGGCTTGACAGAGGTTGATTTATTACCCTCCGACGGGGTTTCGAAATCGAATGAGTCGTCGTTGGGAGTCGTTGGAAATTTTTCTCCTACTCCGGCGTTGGTTTTGCCTCCACCGCCGCCACCGGAGCTTAATTGGACGTTTAGACCTATTTCATCTCATAACTCTTCTTCTTCTAATTGTTCTTCTTCTTTTATTCCTTTTGGTCCATACTTTTCAACTCCCTTTCAACTCCACCCTGGACTTGATTTAGTCGCTGCCACCGCCGCCGCCGCCGCCGGATCTAGCTCCGATGCTGTTAGGGTTATCGACCCTCCTCGCCGCCCTCATTCTGGGATTTGGTTTTCTCTTCAACCATTGGAATTAAACCAGTAAGAAAACTCAATCTAATTACACCCTCAAATATCTTCTTTACATATTTTGTCACAATCCGTATTTGATTTTCGTTACAATCTTGTACTACTAAAAGATCTTCCATTTTTCTCCGCCTTTTAGTTATTTTTTTTATAAAGTTAATTTGATGATATTTTTTTCTATTTTTGGTTTGATTTTTTGCAATGCAGAGGAAAACAACCAGTGTTGCCTCACAGATCCAGCTACTTGAGAATCAAGTATTGATTCCTTTTTTCCTTTTACCTTACTTAGAATTGGATCTTTGTTAATTAACAAAATTAGCATGTGGGTTTTATTTGCAAATGCTTGTTTTTCAAAATTTGAGTATCATTTTACTTGAATTAAGTATAACTCATAATTAATTTTCATCTTTTTGTGAAGGGATGGAAAGATGACAGTTCGATTACTAATCAAGTACTTGATGAAAAAGCTCAGATTGGACAATGAATTAGAGGTATTTATAAAATTTAACTTACTTTGCTGA

mRNA sequence

ATGGTTCCTCCTACTTATGCTCCTCCTCCTTCTTCCTTTCCTTTTAATCTCTTCTCTCCAAGTTTTCCTCTCATGAGTCATTTTGAGGGTTTCCATAATAATAACAATAATTCTCATCATCATCAACATCATCTCTTTCCTCTTCAAGATCATGATTCAACAACCAACCAAAACTCTTCTACTTCTAAGGATCTAACTCTTCATGACTCCGCCGTCGTCGCCGATAAGAGTTGGCTTCGTCTTAGCATCGGTGCTACCACCCCTGACGTCGTCGTccacaaccatcaccaccaccatcaccaacaaccaccaGGGTTTCGCTTTGGCTTGACAGAGGTTGATTTATTACCCTCCGACGGGGTTTCGAAATCGAATGAGTCGTCGTTGGGAGTCGTTGGAAATTTTTCTCCTACTCCGGCGTTGGTTTTGCCTCCACCGCCGCCACCGGAGCTTAATTGGACGTTTAGACCTATTTCATCTCATAACTCTTCTTCTTCTAATTGTTCTTCTTCTTTTATTCCTTTTGGTCCATACTTTTCAACTCCCTTTCAACTCCACCCTGGACTTGATTTAGTcgctgccaccgccgccgccgccgccgGATCTAGCTCCGATGCTGTTAGGGTTATCGACCCTCCTCGCCGCCCTCATTCTGGGATTTGGTTTTCTCTTCAACCATTGGAATTAAACCAAGGAAAACAACCAGTGTTGCCTCACAGATCCAGCTACTTGAGAATCAAGGATGGAAAGATGACAGTTCGATTACTAATCAAGTACTTGATGAAAAAGCTCAGATTGGACAATGAATTAGAGGTATTTATAAAATTTAACTTACTTTGCTGA

Coding sequence (CDS)

ATGGTTCCTCCTACTTATGCTCCTCCTCCTTCTTCCTTTCCTTTTAATCTCTTCTCTCCAAGTTTTCCTCTCATGAGTCATTTTGAGGGTTTCCATAATAATAACAATAATTCTCATCATCATCAACATCATCTCTTTCCTCTTCAAGATCATGATTCAACAACCAACCAAAACTCTTCTACTTCTAAGGATCTAACTCTTCATGACTCCGCCGTCGTCGCCGATAAGAGTTGGCTTCGTCTTAGCATCGGTGCTACCACCCCTGACGTCGTCGTCCACAACCATCACCACCACCATCACCAACAACCACCAGGGTTTCGCTTTGGCTTGACAGAGGTTGATTTATTACCCTCCGACGGGGTTTCGAAATCGAATGAGTCGTCGTTGGGAGTCGTTGGAAATTTTTCTCCTACTCCGGCGTTGGTTTTGCCTCCACCGCCGCCACCGGAGCTTAATTGGACGTTTAGACCTATTTCATCTCATAACTCTTCTTCTTCTAATTGTTCTTCTTCTTTTATTCCTTTTGGTCCATACTTTTCAACTCCCTTTCAACTCCACCCTGGACTTGATTTAGTCGCTGCCACCGCCGCCGCCGCCGCCGGATCTAGCTCCGATGCTGTTAGGGTTATCGACCCTCCTCGCCGCCCTCATTCTGGGATTTGGTTTTCTCTTCAACCATTGGAATTAAACCAAGGAAAACAACCAGTGTTGCCTCACAGATCCAGCTACTTGAGAATCAAGGATGGAAAGATGACAGTTCGATTACTAATCAAGTACTTGATGAAAAAGCTCAGATTGGACAATGAATTAGAGGTATTTATAAAATTTAACTTACTTTGCTGA

Protein sequence

MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTTNQNSSTSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDGVSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHRSSYLRIKDGKMTVRLLIKYLMKKLRLDNELEVFIKFNLLC*

Homology

[Close]

BLAST of Cucsa.349270 vs. TrEMBL
Match: A0A0A0KC58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091920 PE=4 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 1.2e-159
Identity = 271/272 (99.63%), Postives = 272/272 (100.00%), Query Frame = 1


Query: 1   MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTTNQNSS 60
           MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTTNQNSS
Sbjct: 1   MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTTNQNSS 60

Query: 61  TSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDG 120
           TSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDG
Sbjct: 61  TSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDG 120

Query: 121 VSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFS 180
           VSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFS
Sbjct: 121 VSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFS 180

Query: 181 TPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHR 240
           TPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHR
Sbjct: 181 TPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHR 240

Query: 241 SSYLRIKDGKMTVRLLIKYLMKKLRLDNELEV 273
           SSYLRIKDGKMTVRLLIKYLMKKLRLDNELE+
Sbjct: 241 SSYLRIKDGKMTVRLLIKYLMKKLRLDNELEI 272

[Close]

BLAST of Cucsa.349270 vs. TrEMBL
Match: B9GMR4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13220g PE=4 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 9.5e-37
Identity = 123/314 (39.17%), Postives = 161/314 (51.27%), Query Frame = 1


Query: 18  FSPSFPLMSHFEGFHNNNNNSHHHQHHL----FPLQDHDSTTN----QNSSTSKDLTLHD 77
           ++ SF LMS  EG+ +  + +      L     P+ + +S TN    +  S+SKD+    
Sbjct: 30  YNESFGLMSRLEGYDSCVSEACLLGSDLVVANIPMAEDESRTNSVNNEAGSSSKDVQEE- 89

Query: 78  SAVVADKSWLRLSIGATTPDVVV-------HNHHHHHHQQ------PPGFRFGLTEVDLL 137
                D+ WL+LSIG  T            H HHHHHHQQ      P   R GL E+DLL
Sbjct: 90  ----RDEGWLQLSIGGQTTTTTTPTSHESKHYHHHHHHQQQQLVLDPTTRRGGLIELDLL 149

Query: 138 PSDGVSKSNESS-----LGVVGNFSPTPALVL--------------------------PP 197
           P    S S+++      +  V +F   P  V+                            
Sbjct: 150 PGSISSISHQARPLSTPMFHVPDFRTPPRPVMNIAASHATNFGTTSLFFQHHPAATSSTY 209

Query: 198 PPPPELNWTFRPI------SSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLVAATAAAA 257
           P   E+NW FRP+      +S + S S+ SSS +P G YFS PFQ++ G+D+        
Sbjct: 210 PLHQEINWPFRPMLHNIATASSSYSPSSSSSSLMPLGSYFSRPFQVNSGMDV-------- 269

Query: 258 AGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHRS-SYLRIKDGKMTVRLLIK 273
           AG SSD  RVIDPPRRPHSGIWF LQ  + NQ K+P LP  S SYLRIKDG+MTVRLL+K
Sbjct: 270 AGPSSD-FRVIDPPRRPHSGIWFLLQASQ-NQTKEPFLPQISKSYLRIKDGRMTVRLLMK 328

[Close]

BLAST of Cucsa.349270 vs. TrEMBL
Match: A0A061E508_THECC (RING finger protein, putative OS=Theobroma cacao GN=TCM_008415 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.9e-35
Identity = 111/283 (39.22%), Postives = 149/283 (52.65%), Query Frame = 1


Query: 18  FSPSFPLMSHFEGFHNNNN---NSHHHQHHLFPLQDHDSTTNQNSSTSKDLTLHDSAVVA 77
           ++ SF LMS   G+  ++     S    + +   +   ++ N+  S+SKD    +     
Sbjct: 31  YTESFGLMSRVHGYDYHSEACLGSDLVANSMAEDESRTNSLNEERSSSKDNNQEEK---- 90

Query: 78  DKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDGVSKSNESSLGVVGN 137
           D+ WL+L IG        ++   H    P   R GL E+DLLP  G S      L    N
Sbjct: 91  DEGWLQLGIGG---QATRYDSSKHDQGDPTARRGGLIELDLLP--GGSSQQARPLAPTFN 150

Query: 138 F----SPTPALV---------------LPPPPPPELNWTFRPISSHNS---SSSNCSSSF 197
                +P P ++                   P  E+NW FRPIS + +   SSS+ SSS 
Sbjct: 151 MPEFRAPRPPVMHSFSTSLFFQHQQGSSSTFPQGEINWAFRPISQNIAAAPSSSSSSSSL 210

Query: 198 IPFGPYFSTPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQG 257
           +P G +F+ PFQ+  G+D+        AG SSD VR+IDPPRRPHSGIWF LQ  + NQ 
Sbjct: 211 VPLGSHFARPFQVQLGMDV--------AGPSSD-VRIIDPPRRPHSGIWFMLQASQ-NQA 270

Query: 258 KQPVLPH-RSSYLRIKDGKMTVRLLIKYLMKKLRLDNELEVFI 275
           K+P LP    SYLRIKDGKMTVRLL+KYL+ KLRLD+E E+ I
Sbjct: 271 KEPFLPQIPKSYLRIKDGKMTVRLLMKYLVNKLRLDSESEIEI 294

[Close]

BLAST of Cucsa.349270 vs. TrEMBL
Match: B9RFX8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437950 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 112/283 (39.58%), Postives = 147/283 (51.94%), Query Frame = 1


Query: 33  NNNNNSHHHQHHLFPLQDHDSTTNQNSSTSKDLTLHDSAVVADKSWLRLSIGATTPDVVV 92
           NNNNN+++           ++T N N++T ++          D+ WL+L IG  T     
Sbjct: 92  NNNNNTNNS----------NTTPNNNNNTREE--------ERDEGWLQLGIGGNTR-TAT 151

Query: 93  HN---HHHHHHQQPPGF-RFGLTEVDLLPSDGVSKSNES---SLGVVGNFSPTPALVLPP 152
           HN   + HHH   P G  R GL E+DLLP  G S S++    S  +    S +P + +  
Sbjct: 152 HNQSKYQHHHVIDPSGATRGGLIELDLLPGGGSSSSHQGRPLSAPIFHVPSRSPVMNIAA 211

Query: 153 PPPP------------------------ELNWTFR---------PISSHNSSSSNCSSSF 212
             P                         E+NW FR         P SS + +S + SSS 
Sbjct: 212 GAPSFSTSLFFHQHQQPGSGSSIYPHHQEINWAFRHMPHNIAMAPSSSSSPNSQSSSSSL 271

Query: 213 IPFGP-YFSTPFQLHP--GLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLEL 272
           +P G  YFS PFQ+H   G+D+        AG SS   RVIDPPRRPHSGIWF+LQ  + 
Sbjct: 272 MPLGSSYFSRPFQVHSSGGVDV--------AGPSSSDFRVIDPPRRPHSGIWFTLQASQ- 331

[Close]

BLAST of Cucsa.349270 vs. TrEMBL
Match: A0A067JUS7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23112 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.9e-31
Identity = 102/257 (39.69%), Postives = 134/257 (52.14%), Query Frame = 1


Query: 49  QDHDSTTNQNSSTSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRF 108
           +D+++TT  N++   D          D+ WL+LSIG  +   + H     H       R 
Sbjct: 84  KDNNNTTTDNNNIQDD---------RDEGWLQLSIGGHS---ISHESKQDHQVDSTARRG 143

Query: 109 GLTEVDLLPSDGVSKSNESSLGVVG-----NFSPTPALVLPP------------------ 168
           GL E+DLLP    +++   S  +            PA++                     
Sbjct: 144 GLIELDLLPGSSSNQARPLSAPIFHVPAEFRIPSRPAIMSNSSFFQHQHQHQQGSSSTTY 203

Query: 169 PPPPELNWTFRPISSHNSSS------SNCSSSFIPFG-PYFSTPFQLHPGLDLVAATAAA 228
           P   E+NW FR +    SSS      S+ SS  +P G  YFS PFQ++ G+D+       
Sbjct: 204 PHHQEINWAFRHMPHIASSSPSPNSQSSSSSLIVPMGGSYFSRPFQVYSGIDV------- 263

Query: 229 AAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHRS-SYLRIKDGKMTVRLLI 275
            AG SSD  RVIDPPRRPHSGIWF LQ  + NQ ++P LP  S SYLRIKDG+MTVRLL+
Sbjct: 264 -AGPSSD-FRVIDPPRRPHSGIWFVLQASQ-NQAQEPFLPQISKSYLRIKDGRMTVRLLM 318

[Close]

BLAST of Cucsa.349270 vs. TAIR10
Match: AT5G13250.1 (AT5G13250.1 RING finger protein)

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-19
Identity = 62/138 (44.93%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 135 FSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPF-GPYFS-TPFQLHPGLDLV 194
           F   P  ++ P         F P +    SSS+  S  +P  G YF  + FQ      L+
Sbjct: 193 FHTRPQDMIGPWAAAAFRTPFVPQNLTQPSSSSSGSLMMPLMGQYFGRSSFQPQ----LI 252

Query: 195 AATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPH-RSSYLRIKDGKM 254
                      S ++RVIDPPRRPHSGIWF LQ  + NQ  +P LP    SYLRIKDGKM
Sbjct: 253 GNDNPDGVAGPSSSLRVIDPPRRPHSGIWFLLQASQ-NQTVEPFLPQIPKSYLRIKDGKM 312

Query: 255 TVRLLIKYLMKKLRLDNE 270
           TVRLL+KYL+ KLRL++E
Sbjct: 313 TVRLLMKYLVNKLRLEHE 325

[Close]

BLAST of Cucsa.349270 vs. TAIR10
Match: AT1G28080.1 (AT1G28080.1 RING finger protein)

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-19
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 200 AGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPH-RSSYLRIKDGKMTVRLLIK 259
           AG SS+  RV+DPPRRPHSG+WF LQ  +  Q ++P LP    SYLRIKDG++TVRLLIK
Sbjct: 218 AGPSSE-FRVLDPPRRPHSGLWFLLQASQF-QEREPFLPQVNKSYLRIKDGRITVRLLIK 277

Query: 260 YLMKKLRLDNELEVFI 275
           YLMKKL LD+E EV I
Sbjct: 278 YLMKKLELDSESEVNI 291

[Close]

BLAST of Cucsa.349270 vs. NCBI nr
Match: gi|449445780|ref|XP_004140650.1| (PREDICTED: uncharacterized protein LOC101204945 [Cucumis sativus])

HSP 1 Score: 570.5 bits (1469), Expect = 1.7e-159
Identity = 271/272 (99.63%), Postives = 272/272 (100.00%), Query Frame = 1


Query: 1   MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTTNQNSS 60
           MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTTNQNSS
Sbjct: 1   MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTTNQNSS 60

Query: 61  TSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDG 120
           TSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDG
Sbjct: 61  TSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSDG 120

Query: 121 VSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFS 180
           VSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFS
Sbjct: 121 VSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYFS 180

Query: 181 TPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHR 240
           TPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHR
Sbjct: 181 TPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHR 240

Query: 241 SSYLRIKDGKMTVRLLIKYLMKKLRLDNELEV 273
           SSYLRIKDGKMTVRLLIKYLMKKLRLDNELE+
Sbjct: 241 SSYLRIKDGKMTVRLLIKYLMKKLRLDNELEI 272

[Close]

BLAST of Cucsa.349270 vs. NCBI nr
Match: gi|659119902|ref|XP_008459904.1| (PREDICTED: uncharacterized protein LOC103498884 [Cucumis melo])

HSP 1 Score: 520.4 bits (1339), Expect = 2.0e-144
Identity = 255/273 (93.41%), Postives = 263/273 (96.34%), Query Frame = 1


Query: 1   MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNNNSHHHQHHLFPLQDHDSTT-NQNS 60
           MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNN ++++ HHLFPLQDHDSTT NQNS
Sbjct: 1   MVPPTYAPPPSSFPFNLFSPSFPLMSHFEGFHNNNN-TNNNSHHLFPLQDHDSTTTNQNS 60

Query: 61  STSKDLTLHDSAVVADKSWLRLSIGATTPDVVVHNHHHHHHQQPPGFRFGLTEVDLLPSD 120
           STSKDLTLHDSA VADK WLRLS+GATTPDVVVH HHHHHHQQPPGFR GLTE+DLLPSD
Sbjct: 61  STSKDLTLHDSAAVADKGWLRLSVGATTPDVVVH-HHHHHHQQPPGFRLGLTELDLLPSD 120

Query: 121 GVSKSNESSLGVVGNFSPTPALVLPPPPPPELNWTFRPISSHNSSSSNCSSSFIPFGPYF 180
           GVSKSNESSLGVVGNFSP+PALVLPPPPP ELNWTFRPISSHNSSSSNCSSSFIPFGPYF
Sbjct: 121 GVSKSNESSLGVVGNFSPSPALVLPPPPPAELNWTFRPISSHNSSSSNCSSSFIPFGPYF 180

Query: 181 STPFQLHPGLDLVAATAAAAAGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPH 240
           STPFQLHPGLDLVAAT AAAAGSSS AVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPH
Sbjct: 181 STPFQLHPGLDLVAAT-AAAAGSSSGAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPH 240

Query: 241 RSSYLRIKDGKMTVRLLIKYLMKKLRLDNELEV 273
           RSSYLRIKDGKMTVRLLIKYLMKKLRLDNELE+
Sbjct: 241 RSSYLRIKDGKMTVRLLIKYLMKKLRLDNELEI 270

[Close]

BLAST of Cucsa.349270 vs. NCBI nr
Match: gi|743880266|ref|XP_011036153.1| (PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica])

HSP 1 Score: 164.9 bits (416), Expect = 2.1e-37
Identity = 126/314 (40.13%), Postives = 163/314 (51.91%), Query Frame = 1


Query: 18  FSPSFPLMSHFEGFHNNNNNSHHHQHHL----FPLQDHDSTTN----QNSSTSKDLTLHD 77
           ++ SF LMS  EG+ +  + +      L     P+ + +S TN    +  S+SKD+    
Sbjct: 32  YNESFGLMSRLEGYDSCISEACLLGSDLVVANIPMAEDESRTNSVNNEAGSSSKDIREE- 91

Query: 78  SAVVADKSWLRLSIGA-----TTPDVVVHNHHHHHHQQ------PPGFRFGLTEVDLLPS 137
                D+ WL+LSIG      TTP      H+HHHHQQ      P   R GL E+DLLP 
Sbjct: 92  ----RDEGWLQLSIGGQTTTTTTPTSHESKHYHHHHQQQQLVLDPTTRRGGLIELDLLPG 151

Query: 138 DGVSKSNESS-----LGVVGNFSPTPALVL--------------------------PPPP 197
              S S+E+      +  V +F   P  V+                            P 
Sbjct: 152 SISSISHEARPLSTPMFHVPDFRTPPRPVMNIAASHATNFGTTSLFFQHHPAATSSTYPL 211

Query: 198 PPELNWTFRPI------SSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLVAATAAAAAG 257
             E+NW FRP+       S +SS S+ SSS +P G YFS PFQ++ G+D+        AG
Sbjct: 212 HQEINWPFRPMLPNIATPSSSSSPSSSSSSLMPLGSYFSRPFQVNSGMDV--------AG 271

Query: 258 SSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHRS-SYLRIKDGKMTVRLLIKYL 275
            SSD  RVIDPPRRPHSGIWF LQ  + NQ K+P LP  S SYLRIKDG+MTVRLL+KYL
Sbjct: 272 PSSD-FRVIDPPRRPHSGIWFLLQASQ-NQTKEPFLPQISKSYLRIKDGRMTVRLLMKYL 330

[Close]

BLAST of Cucsa.349270 vs. NCBI nr
Match: gi|743880262|ref|XP_011036152.1| (PREDICTED: uncharacterized protein LOC105133752 isoform X1 [Populus euphratica])

HSP 1 Score: 163.3 bits (412), Expect = 6.1e-37
Identity = 125/311 (40.19%), Postives = 161/311 (51.77%), Query Frame = 1


Query: 18  FSPSFPLMSHFEGFHNNNNNSHHHQHHL----FPLQDHDSTTN----QNSSTSKDLTLHD 77
           ++ SF LMS  EG+ +  + +      L     P+ + +S TN    +  S+SKD+    
Sbjct: 32  YNESFGLMSRLEGYDSCISEACLLGSDLVVANIPMAEDESRTNSVNNEAGSSSKDIREE- 91

Query: 78  SAVVADKSWLRLSIGA-----TTPDVVVHNHHHHHHQQ------PPGFRFGLTEVDLLPS 137
                D+ WL+LSIG      TTP      H+HHHHQQ      P   R GL E+DLLP 
Sbjct: 92  ----RDEGWLQLSIGGQTTTTTTPTSHESKHYHHHHQQQQLVLDPTTRRGGLIELDLLPG 151

Query: 138 DGVSKSNESS-----LGVVGNFSPTPALVL--------------------------PPPP 197
              S S+E+      +  V +F   P  V+                            P 
Sbjct: 152 SISSISHEARPLSTPMFHVPDFRTPPRPVMNIAASHATNFGTTSLFFQHHPAATSSTYPL 211

Query: 198 PPELNWTFRPI------SSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLVAATAAAAAG 257
             E+NW FRP+       S +SS S+ SSS +P G YFS PFQ++ G+D+        AG
Sbjct: 212 HQEINWPFRPMLPNIATPSSSSSPSSSSSSLMPLGSYFSRPFQVNSGMDV--------AG 271

Query: 258 SSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHRS-SYLRIKDGKMTVRLLIKYL 272
            SSD  RVIDPPRRPHSGIWF LQ  + NQ K+P LP  S SYLRIKDG+MTVRLL+KYL
Sbjct: 272 PSSD-FRVIDPPRRPHSGIWFLLQASQ-NQTKEPFLPQISKSYLRIKDGRMTVRLLMKYL 327

[Close]

BLAST of Cucsa.349270 vs. NCBI nr
Match: gi|566148714|ref|XP_002297867.2| (hypothetical protein POPTR_0001s13220g [Populus trichocarpa])

HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 123/314 (39.17%), Postives = 161/314 (51.27%), Query Frame = 1


Query: 18  FSPSFPLMSHFEGFHNNNNNSHHHQHHL----FPLQDHDSTTN----QNSSTSKDLTLHD 77
           ++ SF LMS  EG+ +  + +      L     P+ + +S TN    +  S+SKD+    
Sbjct: 30  YNESFGLMSRLEGYDSCVSEACLLGSDLVVANIPMAEDESRTNSVNNEAGSSSKDVQEE- 89

Query: 78  SAVVADKSWLRLSIGATTPDVVV-------HNHHHHHHQQ------PPGFRFGLTEVDLL 137
                D+ WL+LSIG  T            H HHHHHHQQ      P   R GL E+DLL
Sbjct: 90  ----RDEGWLQLSIGGQTTTTTTPTSHESKHYHHHHHHQQQQLVLDPTTRRGGLIELDLL 149

Query: 138 PSDGVSKSNESS-----LGVVGNFSPTPALVL--------------------------PP 197
           P    S S+++      +  V +F   P  V+                            
Sbjct: 150 PGSISSISHQARPLSTPMFHVPDFRTPPRPVMNIAASHATNFGTTSLFFQHHPAATSSTY 209

Query: 198 PPPPELNWTFRPI------SSHNSSSSNCSSSFIPFGPYFSTPFQLHPGLDLVAATAAAA 257
           P   E+NW FRP+      +S + S S+ SSS +P G YFS PFQ++ G+D+        
Sbjct: 210 PLHQEINWPFRPMLHNIATASSSYSPSSSSSSLMPLGSYFSRPFQVNSGMDV-------- 269

Query: 258 AGSSSDAVRVIDPPRRPHSGIWFSLQPLELNQGKQPVLPHRS-SYLRIKDGKMTVRLLIK 273
           AG SSD  RVIDPPRRPHSGIWF LQ  + NQ K+P LP  S SYLRIKDG+MTVRLL+K
Sbjct: 270 AGPSSD-FRVIDPPRRPHSGIWFLLQASQ-NQTKEPFLPQISKSYLRIKDGRMTVRLLMK 328

The following BLAST results are available for this feature:

BLAST of Cucsa.349270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC58_CUCSA	1.2e-159	99.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091920 PE=4 SV=1	[more]
B9GMR4_POPTR	9.5e-37	39.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13220g PE=4 SV=2	[more]
A0A061E508_THECC	8.9e-35	39.22	RING finger protein, putative OS=Theobroma cacao GN=TCM_008415 PE=4 SV=1	[more]
B9RFX8_RICCO	1.7e-33	39.58	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437950 PE=4 SV=1	[more]
A0A067JUS7_JATCU	5.9e-31	39.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23112 PE=4 SV=1	[more]

BLAST of Cucsa.349270 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13250.1	2.7e-19	44.93	RING finger protein	[more]
AT1G28080.1	8.0e-19	65.79	RING finger protein	[more]

BLAST of Cucsa.349270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445780\|ref\|XP_004140650.1\|	1.7e-159	99.63	PREDICTED: uncharacterized protein LOC101204945 [Cucumis sativus]	[more]
gi\|659119902\|ref\|XP_008459904.1\|	2.0e-144	93.41	PREDICTED: uncharacterized protein LOC103498884 [Cucumis melo]	[more]
gi\|743880266\|ref\|XP_011036153.1\|	2.1e-37	40.13	PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]	[more]
gi\|743880262\|ref\|XP_011036152.1\|	6.1e-37	40.19	PREDICTED: uncharacterized protein LOC105133752 isoform X1 [Populus euphratica]	[more]
gi\|566148714\|ref\|XP_002297867.2\|	1.4e-36	39.17	hypothetical protein POPTR_0001s13220g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.349270.1	Cucsa.349270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10825	RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT	coord: 144..275 score: 7.2
None	No IPR available	PANTHER	PTHR10825:SF23	RING FINGER PROTEIN	coord: 144..275 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.349270	Cla001486	Watermelon (97103) v1	cgywmB626
Cucsa.349270	Csa6G091920	Cucumber (Chinese Long) v2	cgycuB490
Cucsa.349270	MELO3C022349	Melon (DHL92) v3.5.1	cgymeB564
Cucsa.349270	ClCG06G001790	Watermelon (Charleston Gray)	cgywcgB595
Cucsa.349270	CSPI06G07430	Wild cucumber (PI 183967)	cgycpiB517
Cucsa.349270	CmaCh17G014080	Cucurbita maxima (Rimu)	cgycmaB0951
Cucsa.349270	CmaCh08G000180	Cucurbita maxima (Rimu)	cgycmaB0955
Cucsa.349270	CmoCh17G013550	Cucurbita moschata (Rifu)	cgycmoB0951
Cucsa.349270	Lsi09G017630	Bottle gourd (USVL1VR-Ls)	cgylsiB562
Cucsa.349270	Cp4.1LG12g09910	Cucurbita pepo (Zucchini)	cgycpeB0907
Cucsa.349270	Cp4.1LG08g06320	Cucurbita pepo (Zucchini)	cgycpeB0915
Cucsa.349270	MELO3C022349.2	Melon (DHL92) v3.6.1	cgymedB565
Cucsa.349270	CsaV3_6G007830	Cucumber (Chinese Long) v3	cgycucB532
Cucsa.349270	Cla97C06G111090	Watermelon (97103) v2	cgywmbB596
Cucsa.349270	Bhi12G002134	Wax gourd	cgywgoB696
Cucsa.349270	Carg11567	Silver-seed gourd	carcgyB0012
Cucsa.349270	Carg15427	Silver-seed gourd	carcgyB0778

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.349270	Cucurbita pepo (Zucchini)	cgycpeB0911
Cucsa.349270	Cucurbita pepo (Zucchini)	cgycpeB0914
Cucsa.349270	Silver-seed gourd	carcgyB1099
Cucsa.349270	Wax gourd	cgywgoB699
Cucsa.349270	Cucumber (Gy14) v1	cgycgyB095
Cucsa.349270	Cucurbita moschata (Rifu)	cgycmoB0955
Cucsa.349270	Wild cucumber (PI 183967)	cgycpiB514