Cucsa.348540 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.348540
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Bacterial trigger factor protein
Location	scaffold03487 : 13625 .. 16375 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGGAGGTTGAGTTTGGGTGAAAGAGGATAAGAGCGACGAGAGAGAGACAGAGAGAGACAATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGTAATCCATCCCTTCTCTCCGCCTCAATTTGTGTTTCTCTACTTTCAGTGAATCATAAATCCATGGAATTTTCCAGTATGTTATTGCTTTATATTGAATGAGCAGTGAAGAACAGAGGTAACAAGCAATAACACTGAATATTGTGTATTGGGTCAGAACTATTTGTGCTAAAATAGCTGTTGGTTTTCTGGGGGAAAAATCCCACATGGGGAAGGTTGTGTAAAGTGCCAAAGTAGCTTAGTATTTTGGTGTCTCTGTTTATATTCATCTGAAGTTTATTCATTCTTATTCAGCCTTCTTTCTTAATTGTATGTAGGCTATATATCATAAGCAGACAACAGATTACTTTACTCCAAACCTCACTTGCATAGGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGGTAATTTCATATCAATTTGACCATGTTTCTAATGATAACCCAAACTATGAATGATGGTGCCCCGAATTAGAAAGACTTTAGAAGATAATTGACTTACTTTGGACTTTTCTTTCATATGATGGAGCTGATTGGTTAACCATCGAAGTTTACCAAACGTATAAACTCATAAGAGACTAGCTTTACTAGCAAATTTTGTGCATGCAAGTCTAAATGCTCATGATCTGCTCCATTTTCTGAATTAGATGCTTCGCATCCTGTCCTGTTATTTAGTCACTCAAAACAGGAAGTTAACATGGAATATCATCTGAAATCACCAATTCATCATCAGGGCGGCCAATACATTTTTGGATAAAATTTTATGTAGCCATAATCACTTGTATGGTTTTGAAAGACAAGTAGTTGTGTATGTTCCTAATTATAAAAGTTATATGTTCACTCTGCAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGGTTACAATACACTTCCTTCTGTTCCTAGAGAAATTTCAACATTATCCATTTGTATAAGGACTATGTTGGATAAAACTTCTAATTTCATTCTGAGCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGGTATGAAACATGGTGAGTTTATTCTCAGAATCCTTGTCTGTCACCCTCACATTTTTATTCTTCATTTAAGTCCTATTTAGAATTTAGAATTTTCAGTTATTTTGTTTTTGACCCTAAACTTTCAAATATAAGTTTTAGTTACTTCACTTTAACGCATTCTATTTAATCCCGAAGAACTATTCTAGTCCTTGCCATTAATAATTCATCAGTCATTTAAACAAAAAAAACTACTTCACTTTGAAATCCAAAATTGAACCTACTAGTGACCAATGTACCTATCCACCACAGAAATCAGTCATCTTGTAAATAATTAAGACGAAGAGATATACCTATTTGGGTTTCTGTTAAAATTTTATAAAAAAATAACGTTCACACCTGAAATGATTTTTGAGGCAAAAATTTAGGGATTGAAATAGAATATTTGAATCTCTGGGGACCAAAATAAAACGAGCATGAAAATACAGGTTTTGAAGTTGGATTTAAACCCTTGTTGTATGCACAACAATGTAATGCAAATTTAGGAACTCTTATTATTACCATAACGTTTCATTTTTTGGAGTTTGCAACCAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGTAATATCCGGAGGCATGTTTCTTATTTTTGAAGTGCTCGTTGTCTTCATTTTCACGTTCTCAAAATCATCATAACATTGTTCTGGCTCCATTAATTTTCTGGCGAGCACTTGTAAACAATCTTGTTTAAGGTTATGGGTGATTGAGATATCTTCATCTTAGAGAGATGAAATTGTTACTAAACGATCTCTCTAAACAATCAGAGAGCCGATTTGCTTAATTTTCTTTTTTCTTTTCCTCGATTCATTTCATTGGACTTGAAACATGCTGCTCTTCGTTGGATGTCAGGAAAGACGCCAAATGTAAGTTTTCTTTACTCTCAATCTGTTGGTTTTCAGGAAGTAACTACTGACAATCTTAATTGGGAAGACATGAGAAGTTACTGATAAGTTCATCATTTGTTCTCAACAGATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGGTAAAGATATAATTTGCATTTTCATGTTCTGATTTTGATAGCATGACGCGCTGAAAGAGTTATGTTGGTTCAAATAGACTGAAAATAACATTATTTCAGCATGTTAGCGCATTCCATATTTTAGTGTTCTCTAATTTCCTTTGCTTTCCTGGAAATTTTTACCGTTGTAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTCAGCTTAAGGAATCAAACTGAACTACTGAACTATTTGTTAACATACATTCACTCAAACTTGATG

mRNA sequence

AAACGGAGGTTGAGTTTGGGTGAAAGAGGATAAGAGCGACGAGAGAGAGACAGAGAGAGACAATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGCTATATATCATAAGCAGACAACAGATTACTTTACTCCAAACCTCACTTGCATAGGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGAAAGACGCCAAATATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTCAGCTTAAGGAATCAAACTGAACTACTGAACTATTTGTTAACATACATTCACTCAAACTTGATG

Coding sequence (CDS)

ATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGCTATATATCATAAGCAGACAACAGATTACTTTACTCCAAACCTCACTTGCATAGGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGAAAGACGCCAAATATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTCAGCTTAAGGAATCAAACTGA

Protein sequence

MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIQLKESN*

Homology

[Close]

BLAST of Cucsa.348540 vs. TrEMBL
Match: A0A0A0KBW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086150 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 8.2e-110
Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           DQSYEDLEDQFEPDENFFFDAIIQLKESN
Sbjct: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 208

[Close]

BLAST of Cucsa.348540 vs. TrEMBL
Match: A0A061EIP8_THECC (Transport, ribosome-binding, bacterial, putative isoform 2 OS=Theobroma cacao GN=TCM_019901 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 133/210 (63.33%), Postives = 159/210 (75.71%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           M+IA     LS+NPK I +KQ  D F PNL+C    FP Q RY + K    + + +L   
Sbjct: 1   MEIAVKTLSLSLNPKIISYKQVEDVFIPNLSCNRACFPPQKRYRALKYQGRERHVHLLTV 60

Query: 61  CAVLSENVSVS-SSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQ 120
            AV S+   V  SSQFEDF+VT   +  EN+ELKI VE+SGAKTRAIF+ VFD+MVA AQ
Sbjct: 61  HAVSSDLEDVGVSSQFEDFNVT-TASINENRELKISVEISGAKTRAIFDDVFDKMVAAAQ 120

Query: 121 PIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLR 180
           PIPGFRRVKGGKTPNIPRDILLE+LG SKVYKQVI +VINSTVA YVEK E+L VGKDLR
Sbjct: 121 PIPGFRRVKGGKTPNIPRDILLEVLGASKVYKQVITKVINSTVAEYVEK-ESLAVGKDLR 180

Query: 181 IDQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           ++QS+EDLE+ FEPDE F FDA+I+L+E+N
Sbjct: 181 VEQSFEDLEEMFEPDEKFRFDAVIKLQETN 208

[Close]

BLAST of Cucsa.348540 vs. TrEMBL
Match: A0A067LJ44_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05726 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 9.2e-61
Identity = 134/212 (63.21%), Postives = 160/212 (75.47%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKIS--LSKNNRYLP 60
           M+IA    FL +NPK I HK+T     PNL+C   S   Q RY ++     L +N+R   
Sbjct: 34  MEIAVKTLFLGLNPKLINHKKTPGIIFPNLSCKSASVSHQTRYRNQGYCARLRENHRCFS 93

Query: 61  AACAVLS--ENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVA 120
              +VLS  ++V VS+SQFEDFSV   ++T E  EL+I VEVSGAKTR IF+ VFD+MVA
Sbjct: 94  PVFSVLSGAQDVGVSTSQFEDFSVM-ASSTDEAGELRINVEVSGAKTREIFDKVFDKMVA 153

Query: 121 EAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGK 180
            AQPIPGFRRVKGGKTP+IPRDILLEILGPSKVYK+VIK++INSTVA YVEK E LKVGK
Sbjct: 154 AAQPIPGFRRVKGGKTPDIPRDILLEILGPSKVYKEVIKKMINSTVAEYVEK-EGLKVGK 213

Query: 181 DLRIDQSYEDLEDQFEPDENFFFDAIIQLKES 209
           DLR+DQS+EDLED FEPDE F FDAII L+++
Sbjct: 214 DLRVDQSFEDLEDAFEPDEKFSFDAIIWLRKN 243

[Close]

BLAST of Cucsa.348540 vs. TrEMBL
Match: A0A061EIA3_THECC (Transport, ribosome-binding, bacterial, putative isoform 1 OS=Theobroma cacao GN=TCM_019901 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.0e-59
Identity = 134/231 (58.01%), Postives = 160/231 (69.26%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           M+IA     LS+NPK I +KQ  D F PNL+C    FP Q RY + K    + + +L   
Sbjct: 1   MEIAVKTLSLSLNPKIISYKQVEDVFIPNLSCNRACFPPQKRYRALKYQGRERHVHLLTV 60

Query: 61  CAVLSENVSVS-SSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQ 120
            AV S+   V  SSQFEDF+VT   +  EN+ELKI VE+SGAKTRAIF+ VFD+MVA AQ
Sbjct: 61  HAVSSDLEDVGVSSQFEDFNVT-TASINENRELKISVEISGAKTRAIFDDVFDKMVAAAQ 120

Query: 121 PIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQ---------- 180
           PIPGFRRVKGGKTPNIPRDILLE+LG SKVYKQVI +VINSTVA YVEKQ          
Sbjct: 121 PIPGFRRVKGGKTPNIPRDILLEVLGASKVYKQVITKVINSTVAEYVEKQRLHRSRSGHL 180

Query: 181 -----------EALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIQLKESN 210
                      E+L VGKDLR++QS+EDLE+ FEPDE F FDA+I+L+E+N
Sbjct: 181 SECSCKHPDYEESLAVGKDLRVEQSFEDLEEMFEPDEKFRFDAVIKLQETN 230

[Close]

BLAST of Cucsa.348540 vs. TrEMBL
Match: U5FVR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12910g PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.0e-59
Identity = 129/208 (62.02%), Postives = 158/208 (75.96%), Query Frame = 1


Query: 3   IAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACA 62
           +AA    L +N K I HK T + FTPNLT     F  Q+R G++     +N R      A
Sbjct: 4   VAAKTLCLGLNLKLISHKHTVNVFTPNLTRKIPCFSHQVRCGAQGFWRRENGRCFTPVAA 63

Query: 63  VLS--ENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 122
           V+S  E+V VSSS+F+D +V  +T+T E++ELKIRVEVSGAKTRAIF  VF +MV  AQP
Sbjct: 64  VVSAAEDVEVSSSRFKDCTVM-ITSTNEDQELKIRVEVSGAKTRAIFEDVFKKMVTAAQP 123

Query: 123 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 182
           IPGFRRVKGGKTP+IPRDILLE+LGPSKVYK+VIK+VINSTVA YV+K E LKV KDLR+
Sbjct: 124 IPGFRRVKGGKTPDIPRDILLEVLGPSKVYKEVIKKVINSTVAEYVDK-EGLKVSKDLRV 183

Query: 183 DQSYEDLEDQFEPDENFFFDAIIQLKES 209
           +QS+EDLED FEPDE F FDA+IQL+++
Sbjct: 184 EQSFEDLEDAFEPDEKFSFDAVIQLQQT 209

[Close]

BLAST of Cucsa.348540 vs. TAIR10
Match: AT2G30695.1 (AT2G30695.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44
Identity = 95/164 (57.93%), Postives = 123/164 (75.00%), Query Frame = 1


Query: 46  RKISLSKNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRA 105
           +K+     NR   A CA  S+    +SS+ E   +T V  T+ + E+K+ V+VSG KT+ 
Sbjct: 40  QKLCTRATNRQFVAVCAAPSD--VETSSKDESVLITKV-ETETSNEVKVHVQVSGEKTQT 99

Query: 106 IFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAY 165
           +FN VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG SKVYKQVIK++INS +  Y
Sbjct: 100 VFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDY 159

Query: 166 VEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           V KQE LKVGK+L + QSYEDLE+ FEP E+F FDA I+L+E++
Sbjct: 160 V-KQEDLKVGKELTVVQSYEDLEETFEPGESFSFDATIKLQEAS 199

[Close]

BLAST of Cucsa.348540 vs. NCBI nr
Match: gi|778711466|ref|XP_011656735.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.3e-111
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           DQSYEDLEDQFEPDENFFFDAIIQLKESN
Sbjct: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 209

[Close]

BLAST of Cucsa.348540 vs. NCBI nr
Match: gi|449445672|ref|XP_004140596.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.2e-109
Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           DQSYEDLEDQFEPDENFFFDAIIQLKESN
Sbjct: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 208

[Close]

BLAST of Cucsa.348540 vs. NCBI nr
Match: gi|659120109|ref|XP_008460018.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X3 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.1e-106
Identity = 199/209 (95.22%), Postives = 201/209 (96.17%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDYFTPNLTC  VSFPSQI+YGS KISLSKNNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           DQSYEDLEDQFEPDE FFFDAIIQLKESN
Sbjct: 181 DQSYEDLEDQFEPDEKFFFDAIIQLKESN 209

[Close]

BLAST of Cucsa.348540 vs. NCBI nr
Match: gi|659120105|ref|XP_008460016.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X1 [Cucumis melo])

HSP 1 Score: 387.9 bits (995), Expect = 1.1e-104
Identity = 199/213 (93.43%), Postives = 201/213 (94.37%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDYFTPNLTC  VSFPSQI+YGS KISLSKNNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGG----KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGK 180
           IPGFRRVKGG    KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGK
Sbjct: 121 IPGFRRVKGGNIQRKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGK 180

Query: 181 DLRIDQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           DLRIDQSYEDLEDQFEPDE FFFDAIIQLKESN
Sbjct: 181 DLRIDQSYEDLEDQFEPDEKFFFDAIIQLKESN 213

[Close]

BLAST of Cucsa.348540 vs. NCBI nr
Match: gi|659120111|ref|XP_008460019.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X4 [Cucumis melo])

HSP 1 Score: 387.1 bits (993), Expect = 1.9e-104
Identity = 198/209 (94.74%), Postives = 200/209 (95.69%), Query Frame = 1


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDYFTPNLTC  VSFPSQI+YGS KISLSKNNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 210
           DQSYEDLEDQFEPDE FFFDAIIQLKESN
Sbjct: 181 DQSYEDLEDQFEPDEKFFFDAIIQLKESN 208

The following BLAST results are available for this feature:

BLAST of Cucsa.348540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW0_CUCSA	8.2e-110	99.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086150 PE=4 SV=1	[more]
A0A061EIP8_THECC	1.9e-61	63.33	Transport, ribosome-binding, bacterial, putative isoform 2 OS=Theobroma cacao GN...	[more]
A0A067LJ44_JATCU	9.2e-61	63.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05726 PE=4 SV=1	[more]
A0A061EIA3_THECC	1.0e-59	58.01	Transport, ribosome-binding, bacterial, putative isoform 1 OS=Theobroma cacao GN...	[more]
U5FVR2_POPTR	3.0e-59	62.02	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12910g PE=4 SV=1	[more]

BLAST of Cucsa.348540 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30695.1	1.4e-44	57.93	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Cucsa.348540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711466\|ref\|XP_011656735.1\|	1.3e-111	100.00	PREDICTED: uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus]	[more]
gi\|449445672\|ref\|XP_004140596.1\|	1.2e-109	99.52	PREDICTED: uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus]	[more]
gi\|659120109\|ref\|XP_008460018.1\|	2.1e-106	95.22	PREDICTED: uncharacterized protein LOC103498958 isoform X3 [Cucumis melo]	[more]
gi\|659120105\|ref\|XP_008460016.1\|	1.1e-104	93.43	PREDICTED: uncharacterized protein LOC103498958 isoform X1 [Cucumis melo]	[more]
gi\|659120111\|ref\|XP_008460019.1\|	1.9e-104	94.74	PREDICTED: uncharacterized protein LOC103498958 isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008881	Trigger_fac_ribosome-bd_bac
IPR008881	Trigger_fac_ribosome-bd_bac

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding
GO:0015031	protein transport
GO:0006457	protein folding
GO:0015031	protein transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019752	carboxylic acid metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0022607	cellular component assembly
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0006457	protein folding
biological_process	GO:0015031	protein transport
biological_process	GO:0044711	single-organism biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.348540.2	Cucsa.348540.2	mRNA
Cucsa.348540.1	Cucsa.348540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008881	Trigger factor, ribosome-binding, bacterial	GENE3D	G3DSA:3.30.70.1050		coord: 85..204 score: 2.0
IPR008881	Trigger factor, ribosome-binding, bacterial	PFAM	PF05697	Trigger_N	coord: 82..204 score: 1.9
IPR008881	Trigger factor, ribosome-binding, bacterial	unknown	SSF102735	Trigger factor ribosome-binding domain	coord: 86..203 score: 3.0
None	No IPR available	PANTHER	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	coord: 9..206 score: 2.1
None	No IPR available	PANTHER	PTHR30560:SF4	SUBFAMILY NOT NAMED	coord: 9..206 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.348540	Cla007031	Watermelon (97103) v1	cgywmB626
Cucsa.348540	Csa6G085130	Cucumber (Chinese Long) v2	cgycuB490
Cucsa.348540	MELO3C022427	Melon (DHL92) v3.5.1	cgymeB564
Cucsa.348540	ClCG06G001070	Watermelon (Charleston Gray)	cgywcgB595
Cucsa.348540	CSPI06G06670	Wild cucumber (PI 183967)	cgycpiB517
Cucsa.348540	CmaCh08G001870	Cucurbita maxima (Rimu)	cgycmaB0956
Cucsa.348540	CmoCh08G001930	Cucurbita moschata (Rifu)	cgycmoB0956
Cucsa.348540	MELO3C022427.2	Melon (DHL92) v3.6.1	cgymedB565
Cucsa.348540	CsaV3_6G007000	Cucumber (Chinese Long) v3	cgycucB532
Cucsa.348540	Cla97C06G110340	Watermelon (97103) v2	cgywmbB596
Cucsa.348540	Bhi12G002192	Wax gourd	cgywgoB698
Cucsa.348540	Carg05017	Silver-seed gourd	carcgyB0098

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.348540	Cucurbita pepo (Zucchini)	cgycpeB0912
Cucsa.348540	Bottle gourd (USVL1VR-Ls)	cgylsiB562